Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/88a81337442ba432134f1623a5dda6/659_bGc-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/340e30ce4f4dec54a95b5e1de8b372/659_bGc-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/a2f2741722d9bbdf9ff052463fa495/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/a2f2741722d9bbdf9ff052463fa495/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 333438442
[W::hts_idx_load3] The index file is older than the data file: 659_bGc-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	333438442
Known Splicing Events:	329762656
Partial Novel Splicing Events:	1941560
Novel Splicing Events:	1590053
Filtered Splicing Events:	144173

Total splicing  Junctions:	571385
Known Splicing Junctions:	274330
Partial Novel Splicing Junctions:	156292
Novel Splicing Junctions:	140763

===================================================================
Create BED file ...
Create Interact file ...