Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/646dd48793921ed8ec9b15cbf8d3ff/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/c7e7cda4da1d944a0377051ae6d593/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/c7e7cda4da1d944a0377051ae6d593/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/9a877395d776ae873b22a61b4fedf4/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bQZ-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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