Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/4c58821c404301a6ebc40f9006e4c7/659_bTo-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/d4cf7d820e700d030475e200d5393f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/d4cf7d820e700d030475e200d5393f/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 291011151
unpaired = 6336088
MERGED PAIRED END READS = 291011151
MATES PROCESSED = 588358390
TOTAL READS     = 297347239
DISTINCT READS  = 1.04751e+08
DISTINCT COUNTS = 1302
MAX COUNT       = 1543823
COUNTS OF 1     = 4.27268e+07
MAX TERMS       = 100
OBSERVED COUNTS (1543824)
1	42726778
2	24645237
3	14477386
4	8435613
5	4951488
6	2971598
7	1844144
8	1187875
9	794301
10	549672
11	392644
12	289522
13	219412
14	169987
15	134508
16	108526
17	89449
18	74943
19	63138
20	54127
21	46581
22	40616
23	35735
24	31351
25	27881
26	25229
27	22457
28	20319
29	18400
30	16945
31	15210
32	13756
33	12683
34	11896
35	10938
36	10333
37	9501
38	8715
39	8224
40	7722
41	7096
42	6718
43	6116
44	5843
45	5664
46	5252
47	4957
48	4673
49	4368
50	4259
51	4079
52	3753
53	3524
54	3309
55	3242
56	3140
57	2986
58	2783
59	2659
60	2588
61	2490
62	2403
63	2219
64	2116
65	2166
66	2003
67	1971
68	1763
69	1807
70	1717
71	1637
72	1559
73	1514
74	1466
75	1453
76	1421
77	1347
78	1311
79	1197
80	1186
81	1161
82	1104
83	1143
84	1025
85	1026
86	997
87	906
88	915
89	894
90	964
91	864
92	831
93	724
94	802
95	758
96	730
97	722
98	709
99	707
100	606
101	643
102	612
103	617
104	606
105	535
106	563
107	580
108	532
109	520
110	525
111	476
112	503
113	457
114	450
115	466
116	443
117	417
118	376
119	452
120	417
121	366
122	382
123	399
124	390
125	350
126	337
127	374
128	334
129	328
130	350
131	303
132	299
133	299
134	292
135	301
136	295
137	298
138	271
139	276
140	276
141	267
142	288
143	249
144	251
145	239
146	236
147	231
148	208
149	215
150	203
151	233
152	213
153	209
154	208
155	202
156	196
157	174
158	210
159	161
160	193
161	165
162	179
163	151
164	178
165	168
166	165
167	177
168	170
169	154
170	137
171	143
172	161
173	136
174	117
175	140
176	145
177	137
178	151
179	138
180	143
181	138
182	128
183	114
184	125
185	147
186	117
187	109
188	137
189	125
190	117
191	103
192	130
193	112
194	116
195	112
196	98
197	105
198	119
199	119
200	84
201	91
202	95
203	112
204	99
205	96
206	112
207	89
208	104
209	86
210	80
211	73
212	90
213	80
214	68
215	75
216	100
217	88
218	89
219	63
220	81
221	79
222	66
223	76
224	92
225	66
226	64
227	92
228	61
229	70
230	69
231	71
232	63
233	64
234	67
235	56
236	69
237	72
238	69
239	65
240	51
241	53
242	63
243	71
244	46
245	49
246	54
247	44
248	55
249	52
250	43
251	49
252	54
253	54
254	45
255	43
256	45
257	53
258	56
259	52
260	63
261	52
262	59
263	40
264	43
265	54
266	35
267	55
268	47
269	39
270	40
271	31
272	65
273	45
274	46
275	55
276	57
277	40
278	34
279	39
280	46
281	40
282	39
283	36
284	40
285	37
286	42
287	27
288	34
289	30
290	34
291	30
292	34
293	28
294	23
295	19
296	29
297	35
298	31
299	43
300	35
301	37
302	23
303	30
304	26
305	27
306	36
307	26
308	33
309	30
310	26
311	27
312	32
313	35
314	28
315	31
316	22
317	36
318	28
319	30
320	32
321	24
322	20
323	24
324	31
325	25
326	23
327	29
328	25
329	19
330	26
331	19
332	18
333	27
334	25
335	27
336	20
337	23
338	17
339	23
340	17
341	20
342	18
343	14
344	17
345	25
346	18
347	17
348	18
349	21
350	19
351	18
352	15
353	30
354	21
355	17
356	20
357	25
358	18
359	20
360	15
361	20
362	22
363	32
364	12
365	11
366	16
367	16
368	19
369	24
370	22
371	16
372	19
373	23
374	16
375	17
376	20
377	13
378	22
379	17
380	12
381	17
382	25
383	15
384	19
385	20
386	14
387	15
388	26
389	14
390	15
391	21
392	18
393	8
394	18
395	15
396	15
397	15
398	13
399	12
400	6
401	16
402	12
403	9
404	12
405	13
406	14
407	11
408	16
409	17
410	12
411	12
412	13
413	9
414	9
415	14
416	13
417	17
418	12
419	16
420	14
421	15
422	16
423	19
424	11
425	9
426	18
427	11
428	15
429	8
430	18
431	10
432	13
433	19
434	10
435	14
436	13
437	10
438	15
439	13
440	12
441	10
442	10
443	18
444	8
445	5
446	8
447	14
448	8
449	10
450	9
451	4
452	10
453	11
454	7
455	6
456	13
457	8
458	12
459	9
460	11
461	9
462	11
463	7
464	12
465	9
466	9
467	8
468	7
469	12
470	10
471	13
472	9
473	12
474	3
475	6
476	9
477	8
478	11
479	9
480	7
481	10
482	9
483	7
484	7
485	6
486	8
487	8
488	10
489	11
490	7
491	8
492	7
493	6
494	5
495	10
496	11
497	11
498	7
499	2
500	7
501	12
502	12
503	8
504	6
505	6
506	6
507	6
508	8
509	6
510	5
511	8
512	8
513	3
514	7
515	8
516	3
517	7
518	9
519	5
520	7
521	2
522	9
523	5
524	7
525	9
526	8
527	9
528	10
529	7
530	7
531	6
532	6
533	3
534	10
535	6
536	9
537	7
538	6
539	3
540	11
541	4
542	4
543	4
544	3
545	6
546	6
547	6
548	6
549	5
550	2
551	3
552	6
553	7
554	4
555	3
556	4
557	4
558	10
559	6
560	4
561	5
562	4
563	6
564	3
565	10
566	6
567	6
568	9
569	1
570	9
571	5
572	10
573	4
574	4
575	2
576	5
577	8
578	9
579	6
580	4
581	4
582	3
583	1
584	3
585	3
586	5
587	6
588	10
589	2
590	8
591	5
593	5
594	3
595	7
597	5
598	8
599	3
600	6
601	7
602	2
603	2
604	4
605	2
606	7
607	5
608	4
609	2
610	1
611	2
612	8
613	5
614	6
615	4
616	2
617	6
618	6
619	1
620	5
621	6
622	5
623	3
624	3
625	6
627	5
628	2
629	2
630	6
631	3
632	6
633	3
634	6
635	6
636	5
637	2
638	4
639	3
640	3
641	4
642	3
643	5
644	2
645	4
646	4
647	3
648	4
649	1
650	2
651	1
652	4
653	3
654	1
655	3
656	1
657	4
658	5
659	5
660	4
661	1
662	3
663	5
664	6
665	1
666	4
667	1
668	3
669	3
670	4
671	2
672	2
673	4
674	3
675	2
676	4
677	4
678	1
679	2
680	3
681	1
682	3
683	1
684	5
685	5
686	3
687	2
688	3
689	1
690	2
691	3
692	4
693	1
694	1
695	4
697	2
698	1
699	3
700	3
702	2
705	4
706	3
707	5
708	2
709	3
710	2
711	4
713	3
714	4
715	3
716	6
717	1
718	2
719	4
720	3
721	1
722	4
724	2
727	3
728	1
729	2
730	1
731	2
732	4
734	1
735	4
736	3
737	5
738	2
739	5
740	4
741	4
743	2
744	3
745	3
746	6
747	3
748	4
749	3
750	5
751	2
752	3
754	2
755	2
756	1
757	3
758	1
762	2
763	1
764	4
765	2
766	2
767	3
768	3
769	1
770	1
771	2
772	2
773	2
774	3
776	2
778	1
779	1
780	2
781	2
782	2
783	2
784	2
786	2
787	2
788	4
789	4
790	2
791	2
792	1
793	3
794	3
795	2
796	1
797	1
798	1
801	1
802	1
803	1
804	2
805	1
806	1
807	3
808	4
809	1
811	3
812	3
813	5
814	3
815	1
816	2
817	1
818	3
819	1
820	2
821	1
823	2
824	3
825	1
826	1
827	2
828	1
829	1
830	2
831	1
832	2
833	1
834	3
835	5
836	3
837	1
838	1
839	1
840	1
842	3
844	2
845	2
846	1
847	1
849	2
850	2
851	2
852	1
853	2
854	2
855	2
856	1
857	1
858	1
859	1
860	3
861	1
862	6
863	1
865	4
866	1
868	3
869	3
870	1
871	1
873	3
874	3
875	1
876	3
877	2
878	4
880	1
881	2
882	2
883	2
884	1
886	1
887	1
888	1
891	1
892	2
893	2
897	1
899	3
900	1
901	1
902	4
903	1
904	1
905	2
906	2
907	3
908	4
909	3
912	2
914	1
916	1
919	1
921	1
922	1
924	2
925	4
927	1
928	3
929	1
930	2
931	1
932	3
933	1
935	1
939	1
940	1
941	3
942	1
943	1
944	1
946	1
949	4
953	1
955	1
956	1
957	2
962	1
965	1
966	3
967	1
968	3
969	1
970	1
971	1
973	1
975	1
977	2
979	1
981	1
984	1
985	3
987	1
988	2
989	1
991	1
993	1
997	2
998	1
1000	1
1001	1
1002	1
1004	1
1008	1
1009	2
1010	1
1012	2
1013	1
1015	1
1017	1
1018	2
1020	2
1023	2
1025	1
1028	1
1030	1
1032	1
1033	1
1034	1
1038	1
1040	1
1041	1
1042	1
1043	3
1045	1
1046	1
1047	2
1048	1
1050	1
1051	1
1052	1
1054	1
1056	2
1057	2
1059	1
1060	1
1061	1
1066	1
1067	2
1068	1
1069	2
1071	1
1073	1
1074	1
1076	2
1077	1
1078	3
1079	1
1080	1
1081	1
1083	1
1084	1
1086	2
1088	1
1089	1
1090	1
1096	1
1097	1
1101	2
1103	2
1106	1
1107	1
1109	1
1113	1
1114	1
1115	2
1116	1
1119	1
1125	2
1127	1
1131	1
1135	1
1137	2
1138	2
1140	1
1143	1
1144	1
1146	3
1148	1
1152	1
1153	1
1162	1
1167	1
1168	1
1169	1
1170	1
1176	3
1184	1
1185	1
1188	1
1190	1
1192	1
1200	1
1203	1
1208	1
1212	1
1217	1
1218	1
1222	1
1227	1
1228	1
1229	1
1231	2
1234	1
1236	1
1240	1
1241	1
1243	3
1247	1
1249	2
1251	1
1254	2
1260	1
1261	1
1263	1
1265	1
1266	1
1270	1
1271	1
1286	1
1289	1
1290	1
1295	1
1304	1
1309	1
1311	2
1312	1
1316	1
1318	1
1320	1
1326	1
1330	1
1331	1
1332	1
1333	2
1334	2
1338	1
1343	1
1344	1
1347	1
1357	1
1364	2
1366	1
1368	1
1369	1
1378	1
1380	1
1384	1
1387	1
1391	1
1392	1
1393	1
1394	2
1396	1
1398	1
1400	1
1407	1
1411	1
1424	2
1425	1
1428	1
1431	1
1433	1
1435	1
1439	1
1441	1
1442	1
1451	1
1453	1
1459	2
1463	2
1466	1
1468	1
1472	1
1486	1
1490	1
1493	1
1497	2
1500	1
1527	1
1530	1
1533	1
1537	1
1544	1
1546	2
1557	1
1574	1
1579	2
1582	1
1588	1
1592	1
1599	1
1602	1
1605	1
1606	1
1607	1
1608	1
1610	1
1612	3
1613	1
1614	1
1633	1
1638	1
1644	1
1647	1
1650	1
1651	1
1653	1
1656	1
1662	1
1669	1
1675	1
1676	1
1695	1
1697	1
1698	1
1700	2
1702	1
1710	1
1712	1
1718	1
1723	1
1744	1
1749	1
1750	1
1756	1
1758	1
1768	1
1769	1
1770	1
1775	2
1783	2
1787	1
1792	1
1796	1
1813	1
1818	1
1824	1
1830	1
1832	1
1833	1
1844	1
1848	1
1861	1
1862	1
1869	1
1879	1
1900	1
1914	1
1917	1
1924	2
1949	1
1955	1
1958	1
1986	1
1991	1
1992	1
2011	1
2013	1
2022	1
2025	1
2032	1
2050	1
2055	1
2060	1
2063	1
2069	2
2070	1
2084	1
2107	1
2110	1
2112	2
2130	1
2132	1
2143	1
2146	1
2151	1
2152	1
2167	1
2179	1
2181	1
2183	1
2197	1
2213	1
2216	1
2218	1
2232	1
2234	1
2244	1
2245	1
2259	3
2260	1
2271	1
2273	1
2292	1
2309	1
2322	1
2338	1
2347	1
2348	1
2376	1
2396	1
2401	1
2418	1
2442	1
2482	2
2483	1
2492	1
2498	1
2503	1
2523	1
2530	1
2535	1
2540	1
2549	1
2552	1
2574	1
2577	1
2588	1
2590	1
2600	1
2603	1
2605	1
2637	1
2642	1
2677	1
2696	1
2720	1
2746	1
2764	1
2765	2
2769	2
2770	1
2794	1
2798	1
2809	1
2859	1
2888	1
2903	1
2919	1
2923	1
2967	1
3041	1
3062	1
3088	1
3121	1
3155	1
3170	1
3174	1
3229	1
3297	1
3307	1
3347	1
3372	1
3389	1
3555	1
3564	1
3604	1
3738	1
3839	1
3938	1
3943	1
4110	1
4198	1
4566	1
4859	1
4969	1
5056	1
5566	1
5613	1
5908	1
6085	1
7403	1
7974	1
9052	1
9324	1
16582	1
19798	1
74881	1
1543823	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.........._......................_...................................._.
..........._._...................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]