Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/83e50495b73c306a8b5644ba3f097e/659_bhK-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/fe5ac121cb9b48dddcb6db54b11289/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/fe5ac121cb9b48dddcb6db54b11289/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/0c7cad2d417e61895abda76f57b0a5/659_bhK-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bhK-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (20508653) splicing reads. 261411 splicing junctions. 185213 known splicing junctions. 76198 novel splicing junctions.
sampling 10% (41017306) splicing reads. 314463 splicing junctions. 197082 known splicing junctions. 117381 novel splicing junctions.
sampling 15% (61525960) splicing reads. 349663 splicing junctions. 203201 known splicing junctions. 146462 novel splicing junctions.
sampling 20% (82034613) splicing reads. 375869 splicing junctions. 207083 known splicing junctions. 168786 novel splicing junctions.
sampling 25% (102543266) splicing reads. 396122 splicing junctions. 209908 known splicing junctions. 186214 novel splicing junctions.
sampling 30% (123051920) splicing reads. 412397 splicing junctions. 211900 known splicing junctions. 200497 novel splicing junctions.
sampling 35% (143560573) splicing reads. 425931 splicing junctions. 213422 known splicing junctions. 212509 novel splicing junctions.
sampling 40% (164069226) splicing reads. 437149 splicing junctions. 214727 known splicing junctions. 222422 novel splicing junctions.
sampling 45% (184577880) splicing reads. 446781 splicing junctions. 215782 known splicing junctions. 230999 novel splicing junctions.
sampling 50% (205086533) splicing reads. 455085 splicing junctions. 216642 known splicing junctions. 238443 novel splicing junctions.
sampling 55% (225595186) splicing reads. 462213 splicing junctions. 217341 known splicing junctions. 244872 novel splicing junctions.
sampling 60% (246103840) splicing reads. 468361 splicing junctions. 217988 known splicing junctions. 250373 novel splicing junctions.
sampling 65% (266612493) splicing reads. 473794 splicing junctions. 218520 known splicing junctions. 255274 novel splicing junctions.
sampling 70% (287121146) splicing reads. 478438 splicing junctions. 218946 known splicing junctions. 259492 novel splicing junctions.
sampling 75% (307629800) splicing reads. 482455 splicing junctions. 219319 known splicing junctions. 263136 novel splicing junctions.
sampling 80% (328138453) splicing reads. 485937 splicing junctions. 219641 known splicing junctions. 266296 novel splicing junctions.
sampling 85% (348647106) splicing reads. 488832 splicing junctions. 219875 known splicing junctions. 268957 novel splicing junctions.
sampling 90% (369155760) splicing reads. 491410 splicing junctions. 220104 known splicing junctions. 271306 novel splicing junctions.
sampling 95% (389664413) splicing reads. 493615 splicing junctions. 220342 known splicing junctions. 273273 novel splicing junctions.
sampling 100% (410173067) splicing reads. 495416 splicing junctions. 220514 known splicing junctions. 274902 novel splicing junctions.
null device 
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