Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/85f0d7bdfbc139ac2bc9cf6f9615ea/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/96da07f6d49a39a7a950b283e74f5a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/96da07f6d49a39a7a950b283e74f5a/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  FFPE_V4_0002_RNA_0006_A23MVY2LT4_1: vaf_p90=1.000000 -> CLEAN

Output saved to: FFPE_V4_0002_RNA_0006_A23MVY2LT4_1.predictions.csv
Summary: 0/1 samples flagged as contaminated