Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/5e87ad9f2b92038a203a50ec5061e2/659_bNS-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/bebbacf65c1e7159985821d9ac3d26/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/bebbacf65c1e7159985821d9ac3d26/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 291669639
unpaired = 6067435
MERGED PAIRED END READS = 291669639
MATES PROCESSED = 589406713
TOTAL READS     = 297737074
DISTINCT READS  = 1.03955e+08
DISTINCT COUNTS = 1138
MAX COUNT       = 1399695
COUNTS OF 1     = 4.0614e+07
MAX TERMS       = 100
OBSERVED COUNTS (1399696)
1	40614020
2	24340361
3	14830857
4	8872200
5	5288756
6	3196450
7	1983097
8	1273415
9	846659
10	581451
11	414268
12	303677
13	228281
14	174723
15	136887
16	108807
17	88567
18	72706
19	60749
20	50697
21	43701
22	37604
23	32718
24	28779
25	25298
26	22396
27	19967
28	18062
29	16133
30	14490
31	13332
32	12079
33	11101
34	10133
35	9312
36	8625
37	7975
38	7370
39	6976
40	6248
41	5996
42	5486
43	5166
44	4710
45	4540
46	4174
47	4054
48	3716
49	3500
50	3415
51	3267
52	2963
53	2970
54	2669
55	2544
56	2413
57	2353
58	2190
59	2137
60	2106
61	1870
62	1877
63	1713
64	1775
65	1685
66	1551
67	1547
68	1359
69	1393
70	1347
71	1246
72	1214
73	1141
74	1187
75	1058
76	969
77	1045
78	1024
79	942
80	909
81	836
82	816
83	843
84	795
85	753
86	729
87	701
88	699
89	636
90	624
91	625
92	615
93	580
94	571
95	535
96	546
97	573
98	533
99	498
100	478
101	474
102	506
103	448
104	438
105	426
106	430
107	361
108	411
109	408
110	351
111	359
112	356
113	369
114	320
115	345
116	329
117	292
118	303
119	331
120	280
121	270
122	288
123	264
124	262
125	252
126	276
127	248
128	277
129	264
130	236
131	219
132	239
133	208
134	200
135	191
136	174
137	207
138	181
139	189
140	168
141	178
142	185
143	166
144	158
145	178
146	156
147	173
148	176
149	161
150	164
151	153
152	125
153	127
154	147
155	122
156	141
157	152
158	135
159	124
160	138
161	142
162	121
163	126
164	131
165	111
166	115
167	130
168	96
169	114
170	105
171	127
172	109
173	107
174	97
175	109
176	95
177	106
178	99
179	100
180	70
181	98
182	86
183	94
184	102
185	93
186	109
187	99
188	93
189	80
190	82
191	83
192	87
193	85
194	85
195	89
196	61
197	79
198	71
199	75
200	72
201	68
202	70
203	61
204	66
205	60
206	53
207	68
208	61
209	38
210	60
211	72
212	62
213	76
214	45
215	68
216	54
217	52
218	63
219	48
220	59
221	55
222	43
223	47
224	61
225	56
226	45
227	47
228	62
229	59
230	37
231	51
232	43
233	49
234	51
235	47
236	37
237	34
238	30
239	42
240	43
241	29
242	49
243	29
244	33
245	41
246	50
247	40
248	50
249	32
250	31
251	32
252	38
253	36
254	37
255	31
256	30
257	34
258	32
259	30
260	33
261	26
262	39
263	37
264	37
265	28
266	25
267	26
268	25
269	33
270	28
271	25
272	26
273	35
274	20
275	23
276	22
277	40
278	25
279	27
280	25
281	22
282	26
283	23
284	29
285	27
286	30
287	26
288	25
289	24
290	21
291	24
292	18
293	24
294	21
295	23
296	18
297	26
298	23
299	20
300	21
301	20
302	18
303	18
304	18
305	30
306	22
307	27
308	22
309	25
310	27
311	15
312	22
313	19
314	8
315	25
316	20
317	21
318	22
319	19
320	13
321	19
322	23
323	18
324	26
325	15
326	15
327	28
328	14
329	20
330	17
331	20
332	23
333	19
334	13
335	27
336	15
337	11
338	19
339	14
340	14
341	13
342	15
343	19
344	16
345	11
346	11
347	15
348	10
349	15
350	16
351	12
352	14
353	13
354	15
355	15
356	10
357	13
358	16
359	18
360	13
361	11
362	15
363	12
364	11
365	9
366	10
367	8
368	13
369	11
370	14
371	10
372	11
373	11
374	15
375	11
376	11
377	6
378	10
379	8
380	7
381	11
382	8
383	9
384	6
385	11
386	6
387	12
388	8
389	11
390	9
391	10
392	9
393	9
394	8
395	12
396	6
397	12
398	5
399	14
400	6
401	7
402	7
403	7
404	12
405	10
406	5
407	10
408	11
409	8
410	6
411	9
412	8
413	9
414	8
415	6
416	5
417	9
418	7
419	7
420	7
421	7
422	8
423	10
424	9
425	3
426	4
427	2
428	7
429	12
430	6
431	4
432	7
433	6
434	9
435	6
436	6
437	8
438	9
439	9
440	10
441	7
442	6
443	5
444	9
445	4
446	10
447	11
448	3
449	6
450	6
451	5
452	8
453	5
454	6
455	6
456	3
457	8
458	8
459	12
460	7
461	4
462	10
463	6
464	4
465	8
466	6
467	3
468	9
469	4
470	4
471	8
472	1
473	6
474	3
475	2
476	5
477	4
478	7
479	6
480	8
481	4
482	3
483	3
484	5
485	4
486	4
487	3
488	3
489	5
490	4
491	4
492	7
493	7
494	14
495	5
496	3
497	5
498	3
499	11
500	5
501	7
502	7
503	2
504	6
505	5
506	3
507	3
508	3
509	5
510	6
511	2
512	4
513	3
514	4
515	1
516	6
517	4
518	5
519	2
520	2
521	3
522	5
523	3
524	5
525	3
526	5
527	6
528	6
529	6
530	4
531	8
532	3
533	3
534	4
535	6
536	4
537	3
538	5
539	2
540	3
541	2
543	5
544	5
545	1
546	5
547	1
548	5
549	6
550	4
551	4
552	3
553	4
554	2
555	1
556	5
557	6
558	6
559	1
560	4
561	1
562	4
563	2
564	3
565	7
566	1
567	2
568	4
569	4
570	6
571	2
572	3
573	1
574	1
575	4
576	2
577	2
578	3
579	4
580	2
581	1
582	2
583	4
584	1
585	2
586	5
587	1
588	1
589	2
590	4
591	3
592	3
593	6
594	4
595	2
596	2
597	3
599	4
600	3
601	1
602	2
603	2
604	4
605	2
606	1
607	3
608	1
609	4
610	2
611	1
612	3
613	4
615	2
616	1
618	3
619	4
620	2
621	3
622	3
623	4
624	2
625	2
626	5
627	3
628	1
629	2
630	4
631	2
632	4
633	1
635	3
636	2
637	3
638	2
639	2
640	4
641	3
642	2
643	3
644	2
645	3
646	2
647	5
648	3
649	3
650	2
651	1
653	2
654	4
655	3
656	1
657	4
659	3
660	2
662	1
663	1
664	2
665	2
666	1
667	1
668	2
669	3
670	1
671	3
672	3
673	2
674	2
675	1
676	2
677	1
678	3
679	3
680	2
681	2
682	2
683	1
684	3
685	1
686	2
689	4
690	3
692	3
693	2
694	1
695	1
696	5
697	1
701	3
702	3
703	3
704	4
705	3
706	1
709	1
710	6
711	1
712	1
713	2
714	3
716	2
717	2
718	1
719	1
720	1
721	2
723	2
724	1
726	2
727	1
728	1
729	1
731	2
732	1
733	1
734	2
735	1
736	1
737	1
738	2
739	1
740	1
741	4
742	1
743	1
745	1
746	2
748	3
751	2
752	1
753	1
756	2
758	3
761	3
762	1
763	2
766	3
768	2
769	1
771	1
772	1
773	1
774	3
776	1
777	1
778	5
779	1
780	1
781	1
783	1
784	6
786	1
787	2
788	1
789	1
790	2
791	2
792	1
793	1
794	2
795	2
796	1
797	1
798	2
799	2
800	3
802	1
805	2
806	2
807	2
809	2
812	2
815	1
816	2
817	1
819	1
820	1
821	2
823	1
824	1
825	1
827	2
828	2
829	1
830	1
832	1
833	1
838	1
839	1
841	2
842	1
843	3
845	1
846	1
847	1
848	1
850	2
853	2
855	2
856	1
858	1
859	2
860	1
861	1
866	1
872	2
873	1
874	3
875	1
879	1
883	1
884	1
888	1
889	1
890	1
896	3
898	2
900	1
902	1
903	2
904	1
905	1
906	1
909	1
911	3
912	2
915	1
917	1
918	1
921	1
923	2
924	1
928	1
932	1
934	1
936	1
937	1
939	1
942	1
944	1
945	1
946	1
948	2
950	3
951	1
952	2
953	2
954	1
955	3
956	1
958	1
961	1
963	1
965	1
966	1
968	2
975	1
981	1
985	3
988	1
989	1
990	1
993	3
995	1
997	1
1000	1
1001	1
1006	1
1009	2
1012	1
1014	1
1020	1
1021	1
1025	1
1028	1
1039	2
1040	1
1041	2
1043	1
1044	1
1045	1
1046	1
1051	1
1052	1
1057	1
1058	2
1059	2
1061	1
1062	1
1065	1
1066	1
1070	1
1071	1
1072	3
1075	1
1077	1
1080	1
1083	1
1087	1
1088	1
1090	2
1092	1
1094	1
1097	1
1098	1
1101	1
1103	2
1104	1
1119	1
1120	2
1121	1
1125	1
1136	1
1137	1
1138	2
1139	1
1142	1
1143	1
1144	1
1149	1
1152	2
1153	1
1160	1
1169	1
1170	1
1171	1
1175	2
1179	2
1181	1
1190	1
1196	1
1197	1
1202	2
1203	1
1204	1
1210	1
1214	1
1221	1
1229	1
1232	1
1238	1
1243	1
1244	1
1246	1
1247	1
1248	1
1255	1
1257	1
1259	1
1263	1
1264	1
1267	1
1285	1
1289	1
1291	1
1297	1
1313	1
1318	1
1320	1
1327	1
1328	1
1332	1
1335	1
1336	1
1342	1
1345	1
1354	1
1359	1
1364	1
1378	1
1385	1
1386	1
1394	1
1395	1
1404	1
1414	1
1422	1
1427	1
1432	1
1442	1
1449	1
1479	1
1480	1
1482	1
1487	1
1489	1
1494	1
1505	1
1507	1
1509	1
1512	2
1515	1
1517	1
1535	1
1536	1
1564	1
1568	1
1571	1
1580	1
1582	1
1585	1
1589	1
1597	1
1598	1
1600	1
1623	1
1628	1
1637	1
1645	1
1646	1
1654	1
1655	1
1707	1
1711	1
1719	3
1720	1
1724	1
1737	1
1738	1
1744	1
1747	1
1752	1
1760	1
1761	1
1762	1
1773	1
1782	1
1787	1
1788	1
1818	1
1853	1
1867	1
1873	1
1880	1
1892	1
1896	1
1902	1
1912	1
1918	1
1927	1
1936	2
1947	1
1960	1
1964	1
1968	1
1974	1
1985	1
1993	1
2001	1
2019	1
2027	1
2032	1
2037	1
2045	1
2061	1
2062	1
2063	1
2066	1
2069	2
2070	1
2077	1
2083	2
2099	1
2116	1
2120	1
2132	1
2133	1
2134	2
2144	2
2145	2
2162	1
2184	1
2188	1
2194	1
2199	1
2211	1
2213	1
2224	1
2229	2
2296	1
2316	1
2317	1
2331	1
2374	1
2387	1
2389	1
2404	1
2405	1
2410	1
2424	1
2425	1
2430	1
2478	1
2481	1
2492	1
2505	1
2520	1
2532	1
2562	1
2568	1
2605	1
2654	1
2749	1
2762	1
2766	1
2840	1
2857	1
2871	1
2879	1
2956	1
3108	1
3185	1
3219	1
3240	1
3288	1
3315	1
3320	1
3343	1
3375	1
3439	1
3553	1
3579	1
3618	1
3655	1
3671	1
3890	1
4120	1
4546	1
4706	1
4995	1
5164	1
5688	1
7381	1
7633	1
9390	1
12170	1
14577	1
15248	1
57368	1
1399695	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
._..._..._.._._._.............._............._................_.........
.._.............__....._.........._.......
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]