Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/e429cb1dc1f02cb5b7cdf4939e4840/659_bGW-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/0a0d54b6f92d739c40f85556633c09/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/0a0d54b6f92d739c40f85556633c09/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/51245fe44ac7ff1f52b5e094f5a41f/659_bGW-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bGW-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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