Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bGW-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGW-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_bGW-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:05:40.196 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:05:40 GMT 2026] MarkDuplicates --INPUT 659_bGW-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGW-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_bGW-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:05:40 GMT 2026] Executing as ?@nf-b2c8b5780e5712b27d62b873b7a9dab9-2979e-m4tvq on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:05:40 MarkDuplicates Start of doWork freeMemory: 105828280; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:05:40 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:05:40 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,218,544
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 4156 as yet unmatched pairs. 968 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,636,959
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 7277 as yet unmatched pairs. 585 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:6,206,276
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 9921 as yet unmatched pairs. 186 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:9,128,738
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 13140 as yet unmatched pairs. 517 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:11,922,874
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 16684 as yet unmatched pairs. 1213 records in RAM.
INFO 2026-06-08 09:05:54 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:15,932,129
INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 18424 as yet unmatched pairs. 120 records in RAM.
INFO 2026-06-08 09:05:56 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:17,640,268
INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 21357 as yet unmatched pairs. 301 records in RAM.
INFO 2026-06-08 09:05:58 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:20,483,524
INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 24183 as yet unmatched pairs. 357 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:21,838,996
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 27734 as yet unmatched pairs. 1147 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:22,091,531
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 30346 as yet unmatched pairs. 945 records in RAM.
INFO 2026-06-08 09:06:03 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:23,971,018
INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 32513 as yet unmatched pairs. 330 records in RAM.
INFO 2026-06-08 09:06:05 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:26,697,379
INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 35039 as yet unmatched pairs. 287 records in RAM.
INFO 2026-06-08 09:06:07 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:28,710,584
INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 37563 as yet unmatched pairs. 148 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:31,684,547
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 40737 as yet unmatched pairs. 451 records in RAM.
INFO 2026-06-08 09:06:10 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:32,895,571
INFO 2026-06-08 09:06:10 MarkDuplicates Tracking 45088 as yet unmatched pairs. 1974 records in RAM.
INFO 2026-06-08 09:06:12 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:36,287,101
INFO 2026-06-08 09:06:12 MarkDuplicates Tracking 46715 as yet unmatched pairs. 806 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:39,439,410
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 49441 as yet unmatched pairs. 952 records in RAM.
INFO 2026-06-08 09:06:15 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:42,700,922
INFO 2026-06-08 09:06:15 MarkDuplicates Tracking 52552 as yet unmatched pairs. 1520 records in RAM.
INFO 2026-06-08 09:06:17 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:43,619,557
INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 55140 as yet unmatched pairs. 1236 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:45,693,788
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 56830 as yet unmatched pairs. 236 records in RAM.
INFO 2026-06-08 09:06:21 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:52,020,939
INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 59807 as yet unmatched pairs. 488 records in RAM.
INFO 2026-06-08 09:06:23 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:58,782,379
INFO 2026-06-08 09:06:23 MarkDuplicates Tracking 63135 as yet unmatched pairs. 1091 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:70,354,523
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 64583 as yet unmatched pairs. 82 records in RAM.
INFO 2026-06-08 09:06:27 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:89,120,210
INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 68174 as yet unmatched pairs. 1070 records in RAM.
INFO 2026-06-08 09:06:28 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:100,906,853
INFO 2026-06-08 09:06:28 MarkDuplicates Tracking 70336 as yet unmatched pairs. 790 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:110,009,120
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 72633 as yet unmatched pairs. 484 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:113,912,045
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 74696 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:116,944,715
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 78695 as yet unmatched pairs. 1651 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:119,959,479
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 81163 as yet unmatched pairs. 1567 records in RAM.
INFO 2026-06-08 09:06:38 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:145,994,691
INFO 2026-06-08 09:06:38 MarkDuplicates Tracking 83000 as yet unmatched pairs. 1631 records in RAM.
INFO 2026-06-08 09:06:40 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:148,844,770
INFO 2026-06-08 09:06:40 MarkDuplicates Tracking 82727 as yet unmatched pairs. 195 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:149,887,176
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 85898 as yet unmatched pairs. 1875 records in RAM.
INFO 2026-06-08 09:06:42 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:150,796,631
INFO 2026-06-08 09:06:42 MarkDuplicates Tracking 90128 as yet unmatched pairs. 3529 records in RAM.
INFO 2026-06-08 09:06:44 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:151,983,244
INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 93552 as yet unmatched pairs. 4427 records in RAM.
INFO 2026-06-08 09:06:46 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,519
INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 99019 as yet unmatched pairs. 7240 records in RAM.
INFO 2026-06-08 09:06:47 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:154,589,897
INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 95036 as yet unmatched pairs. 709 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:155,187,191
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 99340 as yet unmatched pairs. 2192 records in RAM.
INFO 2026-06-08 09:06:50 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:155,727,697
INFO 2026-06-08 09:06:50 MarkDuplicates Tracking 99665 as yet unmatched pairs. 364 records in RAM.
INFO 2026-06-08 09:06:52 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,366
INFO 2026-06-08 09:06:52 MarkDuplicates Tracking 106853 as yet unmatched pairs. 4468 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:156,731,985
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 105462 as yet unmatched pairs. 198 records in RAM.
INFO 2026-06-08 09:06:55 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:160,343,419
INFO 2026-06-08 09:06:55 MarkDuplicates Tracking 108276 as yet unmatched pairs. 363 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:162,383,325
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 110569 as yet unmatched pairs. 223 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:169,124,954
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 124838 as yet unmatched pairs. 11777 records in RAM.
INFO 2026-06-08 09:07:00 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:173,185,910
INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 115550 as yet unmatched pairs. 201 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:181,089,467
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 118049 as yet unmatched pairs. 120 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:185,297,988
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 121189 as yet unmatched pairs. 629 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:200,407,608
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 122889 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:202,011,218
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 127981 as yet unmatched pairs. 2465 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:203,829,876
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 129261 as yet unmatched pairs. 1072 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:206,730,722
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 131662 as yet unmatched pairs. 896 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:209,625,801
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 134629 as yet unmatched pairs. 1178 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:220,253,844
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 136608 as yet unmatched pairs. 654 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:225,866,591
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 139019 as yet unmatched pairs. 654 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:228,214,904
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 141476 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:233,328,302
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 144794 as yet unmatched pairs. 275 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:239,908,737
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 147836 as yet unmatched pairs. 295 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr2:218,895
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 150592 as yet unmatched pairs. 149293 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:10,788,710
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 154415 as yet unmatched pairs. 153073 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr2:23,999,686
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 155717 as yet unmatched pairs. 154336 records in RAM.
INFO 2026-06-08 09:07:28 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:27,083,400
INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 160130 as yet unmatched pairs. 158708 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr2:28,776,929
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 165902 as yet unmatched pairs. 164460 records in RAM.
INFO 2026-06-08 09:07:33 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,255
INFO 2026-06-08 09:07:33 MarkDuplicates Tracking 219601 as yet unmatched pairs. 159960 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 565108 as yet unmatched pairs. 150565 records in RAM.
INFO 2026-06-08 09:07:37 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:07:37 MarkDuplicates Tracking 1257410 as yet unmatched pairs. 132382 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 1377816 as yet unmatched pairs. 129122 records in RAM.
INFO 2026-06-08 09:07:39 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,414
INFO 2026-06-08 09:07:39 MarkDuplicates Tracking 1423915 as yet unmatched pairs. 127773 records in RAM.
INFO 2026-06-08 09:07:41 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:38,318,544
INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 1466188 as yet unmatched pairs. 125028 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:43,912,531
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 1463970 as yet unmatched pairs. 122788 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:53,670,676
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 1460382 as yet unmatched pairs. 119184 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:55,233,365
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 1459425 as yet unmatched pairs. 118207 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:63,912,554
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 1455365 as yet unmatched pairs. 114125 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:69,373,842
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 1457267 as yet unmatched pairs. 116002 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:73,901,316
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 1452544 as yet unmatched pairs. 111255 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:84,839,143
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 1447578 as yet unmatched pairs. 106278 records in RAM.
INFO 2026-06-08 09:07:54 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:86,997,689
INFO 2026-06-08 09:07:54 MarkDuplicates Tracking 1444973 as yet unmatched pairs. 103666 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:97,647,379
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 1443264 as yet unmatched pairs. 101942 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:105,373,672
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 1441789 as yet unmatched pairs. 100429 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:108,772,865
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 1439052 as yet unmatched pairs. 97685 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:112,324,249
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 1436524 as yet unmatched pairs. 95145 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:120,990,026
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 1434454 as yet unmatched pairs. 93073 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:131,501,453
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 1431629 as yet unmatched pairs. 90207 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:151,579,418
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 1429472 as yet unmatched pairs. 88010 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:156,329,730
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 1427557 as yet unmatched pairs. 86080 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 3s. Last read position: chr2:169,569,204
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 1425235 as yet unmatched pairs. 83709 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr2:174,720,741
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 1422877 as yet unmatched pairs. 81322 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:178,542,898
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 1420941 as yet unmatched pairs. 79365 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:178,571,187
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 1418664 as yet unmatched pairs. 77085 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:178,602,397
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 1416278 as yet unmatched pairs. 74694 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:178,653,893
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 1415521 as yet unmatched pairs. 73924 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:178,722,102
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 1412343 as yet unmatched pairs. 70732 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:178,802,237
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 1412383 as yet unmatched pairs. 70760 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:188,988,618
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 1418771 as yet unmatched pairs. 77129 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:189,002,974
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 1413268 as yet unmatched pairs. 71608 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:189,057,392
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 1402537 as yet unmatched pairs. 60846 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:197,400,129
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 1399768 as yet unmatched pairs. 58065 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:202,210,793
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 1396226 as yet unmatched pairs. 54509 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:210,293,790
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 1393772 as yet unmatched pairs. 52034 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:215,365,511
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 1414688 as yet unmatched pairs. 72946 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,000
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 1419792 as yet unmatched pairs. 78033 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,238
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 1411121 as yet unmatched pairs. 69357 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,644
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 1411223 as yet unmatched pairs. 69459 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:215,383,356
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 1395231 as yet unmatched pairs. 53464 records in RAM.
INFO 2026-06-08 09:08:43 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,388,210
INFO 2026-06-08 09:08:43 MarkDuplicates Tracking 1410606 as yet unmatched pairs. 68827 records in RAM.
INFO 2026-06-08 09:08:45 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,707
INFO 2026-06-08 09:08:45 MarkDuplicates Tracking 1394465 as yet unmatched pairs. 52675 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:215,406,370
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 1392987 as yet unmatched pairs. 51193 records in RAM.
INFO 2026-06-08 09:08:48 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,563
INFO 2026-06-08 09:08:48 MarkDuplicates Tracking 1408934 as yet unmatched pairs. 67120 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:215,420,686
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 1379239 as yet unmatched pairs. 37404 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:215,425,184
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 1379653 as yet unmatched pairs. 37816 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,385
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 1377491 as yet unmatched pairs. 35647 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:216,678,966
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 1364084 as yet unmatched pairs. 22227 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:218,344,546
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 1361700 as yet unmatched pairs. 19832 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:219,418,874
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 1358955 as yet unmatched pairs. 17073 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:226,796,698
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 1355031 as yet unmatched pairs. 13130 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 2s. Last read position: chr2:231,456,708
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 1353878 as yet unmatched pairs. 11945 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:237,333,454
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 1350564 as yet unmatched pairs. 8617 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:237,377,072
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 1349080 as yet unmatched pairs. 7130 records in RAM.
INFO 2026-06-08 09:09:08 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:240,682,527
INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 1343770 as yet unmatched pairs. 1782 records in RAM.
INFO 2026-06-08 09:09:10 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr3:5,199,677
INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 1341454 as yet unmatched pairs. 75593 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:12,590,857
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 1340194 as yet unmatched pairs. 74313 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:18,349,050
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 1336098 as yet unmatched pairs. 70199 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:33,798,797
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 1334268 as yet unmatched pairs. 68336 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:39,412,316
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 1330953 as yet unmatched pairs. 64999 records in RAM.
INFO 2026-06-08 09:09:18 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:44,753,505
INFO 2026-06-08 09:09:18 MarkDuplicates Tracking 1328588 as yet unmatched pairs. 62618 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:47,411,918
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 1325890 as yet unmatched pairs. 59909 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:48,574,494
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 1323383 as yet unmatched pairs. 57397 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:49,122,308
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 1320551 as yet unmatched pairs. 54552 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:49,895,447
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 1318015 as yet unmatched pairs. 52006 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:51,987,398
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 1314590 as yet unmatched pairs. 48572 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:52,842,887
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 1311765 as yet unmatched pairs. 45732 records in RAM.
INFO 2026-06-08 09:09:30 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr3:58,123,315
INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 1310484 as yet unmatched pairs. 44432 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:69,047,453
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 1306571 as yet unmatched pairs. 40494 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:99,795,647
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 1304127 as yet unmatched pairs. 38016 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr3:111,884,161
INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 1302208 as yet unmatched pairs. 36067 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr3:120,415,971
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 1300412 as yet unmatched pairs. 34243 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:124,671,717
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 1297070 as yet unmatched pairs. 30883 records in RAM.
INFO 2026-06-08 09:09:41 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:128,052,548
INFO 2026-06-08 09:09:41 MarkDuplicates Tracking 1296096 as yet unmatched pairs. 29876 records in RAM.
INFO 2026-06-08 09:09:43 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:129,605,886
INFO 2026-06-08 09:09:43 MarkDuplicates Tracking 1291826 as yet unmatched pairs. 25579 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:139,358,783
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 1289451 as yet unmatched pairs. 23178 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:149,527,883
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 1288433 as yet unmatched pairs. 22130 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:160,419,380
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 1283640 as yet unmatched pairs. 17317 records in RAM.
INFO 2026-06-08 09:09:50 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:177,047,302
INFO 2026-06-08 09:09:50 MarkDuplicates Tracking 1282536 as yet unmatched pairs. 16145 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:184,300,327
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 1279291 as yet unmatched pairs. 12883 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:186,596,976
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 1275912 as yet unmatched pairs. 9477 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:190,312,965
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 1273806 as yet unmatched pairs. 7357 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:195,778,919
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 1273584 as yet unmatched pairs. 7118 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:195,782,775
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 1278445 as yet unmatched pairs. 11977 records in RAM.
INFO 2026-06-08 09:10:00 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:195,787,344
INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 1270293 as yet unmatched pairs. 3814 records in RAM.
INFO 2026-06-08 09:10:02 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:198,167,676
INFO 2026-06-08 09:10:02 MarkDuplicates Tracking 1266507 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 09:10:06 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 3s. Last read position: chr4:1,728,456
INFO 2026-06-08 09:10:06 MarkDuplicates Tracking 1263737 as yet unmatched pairs. 39438 records in RAM.
INFO 2026-06-08 09:10:08 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:3,174,720
INFO 2026-06-08 09:10:08 MarkDuplicates Tracking 1260781 as yet unmatched pairs. 36458 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:8,227,020
INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 1257818 as yet unmatched pairs. 33469 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:24,795,609
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 1257007 as yet unmatched pairs. 32635 records in RAM.
INFO 2026-06-08 09:10:13 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:39,873,060
INFO 2026-06-08 09:10:13 MarkDuplicates Tracking 1252427 as yet unmatched pairs. 28016 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:54,274,914
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 1250575 as yet unmatched pairs. 26132 records in RAM.
INFO 2026-06-08 09:10:16 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:67,670,550
INFO 2026-06-08 09:10:16 MarkDuplicates Tracking 1247649 as yet unmatched pairs. 23169 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:73,998,052
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 1251257 as yet unmatched pairs. 26752 records in RAM.
INFO 2026-06-08 09:10:20 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:80,035,978
INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 1242567 as yet unmatched pairs. 18048 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:88,521,921
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 1239816 as yet unmatched pairs. 15288 records in RAM.
INFO 2026-06-08 09:10:23 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:108,621,949
INFO 2026-06-08 09:10:23 MarkDuplicates Tracking 1238228 as yet unmatched pairs. 13667 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:121,684,744
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 1237615 as yet unmatched pairs. 13045 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:145,150,589
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 1232621 as yet unmatched pairs. 8027 records in RAM.
INFO 2026-06-08 09:10:28 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr4:155,710,969
INFO 2026-06-08 09:10:28 MarkDuplicates Tracking 1231150 as yet unmatched pairs. 6523 records in RAM.
INFO 2026-06-08 09:10:31 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr4:183,193,650
INFO 2026-06-08 09:10:31 MarkDuplicates Tracking 1227452 as yet unmatched pairs. 2812 records in RAM.
INFO 2026-06-08 09:10:33 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr4:186,709,138
INFO 2026-06-08 09:10:33 MarkDuplicates Tracking 1225810 as yet unmatched pairs. 1163 records in RAM.
INFO 2026-06-08 09:10:35 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr5:10,254,175
INFO 2026-06-08 09:10:35 MarkDuplicates Tracking 1222907 as yet unmatched pairs. 57590 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:14,462,854
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 1221160 as yet unmatched pairs. 55818 records in RAM.
INFO 2026-06-08 09:10:38 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:32,397,275
INFO 2026-06-08 09:10:38 MarkDuplicates Tracking 1216918 as yet unmatched pairs. 51550 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:40,834,196
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 1216350 as yet unmatched pairs. 50962 records in RAM.
INFO 2026-06-08 09:10:42 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:58,459,793
INFO 2026-06-08 09:10:42 MarkDuplicates Tracking 1212005 as yet unmatched pairs. 46597 records in RAM.
INFO 2026-06-08 09:10:44 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:72,460,959
INFO 2026-06-08 09:10:44 MarkDuplicates Tracking 1209638 as yet unmatched pairs. 44187 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:80,059,888
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 1208166 as yet unmatched pairs. 42702 records in RAM.
INFO 2026-06-08 09:10:47 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:84,262,961
INFO 2026-06-08 09:10:47 MarkDuplicates Tracking 1204938 as yet unmatched pairs. 39455 records in RAM.
INFO 2026-06-08 09:10:49 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:108,155,557
INFO 2026-06-08 09:10:49 MarkDuplicates Tracking 1202326 as yet unmatched pairs. 36793 records in RAM.
INFO 2026-06-08 09:10:50 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:128,135,729
INFO 2026-06-08 09:10:50 MarkDuplicates Tracking 1200592 as yet unmatched pairs. 35018 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 2s. Last read position: chr5:134,675,101
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 1197348 as yet unmatched pairs. 31734 records in RAM.
INFO 2026-06-08 09:10:55 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:138,518,748
INFO 2026-06-08 09:10:55 MarkDuplicates Tracking 1195281 as yet unmatched pairs. 29647 records in RAM.
INFO 2026-06-08 09:10:57 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:141,123,471
INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 1192120 as yet unmatched pairs. 26452 records in RAM.
INFO 2026-06-08 09:10:58 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:142,931,941
INFO 2026-06-08 09:10:58 MarkDuplicates Tracking 1189665 as yet unmatched pairs. 23971 records in RAM.
INFO 2026-06-08 09:11:00 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:150,122,002
INFO 2026-06-08 09:11:00 MarkDuplicates Tracking 1189915 as yet unmatched pairs. 24194 records in RAM.
INFO 2026-06-08 09:11:02 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,112
INFO 2026-06-08 09:11:02 MarkDuplicates Tracking 1193311 as yet unmatched pairs. 27586 records in RAM.
INFO 2026-06-08 09:11:03 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:151,133,153
INFO 2026-06-08 09:11:03 MarkDuplicates Tracking 1182167 as yet unmatched pairs. 16418 records in RAM.
INFO 2026-06-08 09:11:05 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:159,176,679
INFO 2026-06-08 09:11:05 MarkDuplicates Tracking 1179420 as yet unmatched pairs. 13659 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,906
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 1178733 as yet unmatched pairs. 12946 records in RAM.
INFO 2026-06-08 09:11:08 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:177,306,105
INFO 2026-06-08 09:11:08 MarkDuplicates Tracking 1175579 as yet unmatched pairs. 9766 records in RAM.
INFO 2026-06-08 09:11:10 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:179,716,161
INFO 2026-06-08 09:11:10 MarkDuplicates Tracking 1172936 as yet unmatched pairs. 7096 records in RAM.
INFO 2026-06-08 09:11:12 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,184
INFO 2026-06-08 09:11:12 MarkDuplicates Tracking 1174643 as yet unmatched pairs. 8782 records in RAM.
INFO 2026-06-08 09:11:14 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr6:1,390,174
INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 1165637 as yet unmatched pairs. 75805 records in RAM.
INFO 2026-06-08 09:11:16 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:7,301,543
INFO 2026-06-08 09:11:16 MarkDuplicates Tracking 1163392 as yet unmatched pairs. 73548 records in RAM.
INFO 2026-06-08 09:11:18 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:17,601,065
INFO 2026-06-08 09:11:18 MarkDuplicates Tracking 1160404 as yet unmatched pairs. 70527 records in RAM.
INFO 2026-06-08 09:11:20 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:26,156,586
INFO 2026-06-08 09:11:20 MarkDuplicates Tracking 1158522 as yet unmatched pairs. 68621 records in RAM.
INFO 2026-06-08 09:11:22 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 2s. Last read position: chr6:27,867,101
INFO 2026-06-08 09:11:22 MarkDuplicates Tracking 1156149 as yet unmatched pairs. 66234 records in RAM.
INFO 2026-06-08 09:11:24 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr6:30,156,981
INFO 2026-06-08 09:11:24 MarkDuplicates Tracking 1152851 as yet unmatched pairs. 62920 records in RAM.
INFO 2026-06-08 09:11:26 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:30,892,429
INFO 2026-06-08 09:11:26 MarkDuplicates Tracking 1152198 as yet unmatched pairs. 62250 records in RAM.
INFO 2026-06-08 09:11:28 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:31,623,819
INFO 2026-06-08 09:11:28 MarkDuplicates Tracking 1148504 as yet unmatched pairs. 58540 records in RAM.
INFO 2026-06-08 09:11:29 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:31,734,248
INFO 2026-06-08 09:11:29 MarkDuplicates Tracking 1148411 as yet unmatched pairs. 58439 records in RAM.
INFO 2026-06-08 09:11:31 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:31,817,116
INFO 2026-06-08 09:11:31 MarkDuplicates Tracking 1145121 as yet unmatched pairs. 55137 records in RAM.
INFO 2026-06-08 09:11:32 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,197
INFO 2026-06-08 09:11:32 MarkDuplicates Tracking 1149270 as yet unmatched pairs. 59278 records in RAM.
INFO 2026-06-08 09:11:34 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:31,992,890
INFO 2026-06-08 09:11:34 MarkDuplicates Tracking 1140299 as yet unmatched pairs. 50300 records in RAM.
INFO 2026-06-08 09:11:36 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:32,662,000
INFO 2026-06-08 09:11:36 MarkDuplicates Tracking 1138255 as yet unmatched pairs. 48243 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:33,313,235
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 1138134 as yet unmatched pairs. 48110 records in RAM.
INFO 2026-06-08 09:11:39 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:34,770,336
INFO 2026-06-08 09:11:39 MarkDuplicates Tracking 1133553 as yet unmatched pairs. 43517 records in RAM.
INFO 2026-06-08 09:11:41 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:37,819,958
INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 1130514 as yet unmatched pairs. 40451 records in RAM.
INFO 2026-06-08 09:11:43 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:43,130,487
INFO 2026-06-08 09:11:43 MarkDuplicates Tracking 1126975 as yet unmatched pairs. 36887 records in RAM.
INFO 2026-06-08 09:11:45 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:44,251,835
INFO 2026-06-08 09:11:45 MarkDuplicates Tracking 1124656 as yet unmatched pairs. 34545 records in RAM.
INFO 2026-06-08 09:11:47 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:56,497,455
INFO 2026-06-08 09:11:47 MarkDuplicates Tracking 1122033 as yet unmatched pairs. 31866 records in RAM.
INFO 2026-06-08 09:11:48 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:73,820,461
INFO 2026-06-08 09:11:48 MarkDuplicates Tracking 1119671 as yet unmatched pairs. 29485 records in RAM.
INFO 2026-06-08 09:11:50 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:75,848,512
INFO 2026-06-08 09:11:50 MarkDuplicates Tracking 1117573 as yet unmatched pairs. 27371 records in RAM.
INFO 2026-06-08 09:11:52 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:89,352,560
INFO 2026-06-08 09:11:52 MarkDuplicates Tracking 1114762 as yet unmatched pairs. 24542 records in RAM.
INFO 2026-06-08 09:11:54 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:108,907,772
INFO 2026-06-08 09:11:54 MarkDuplicates Tracking 1112054 as yet unmatched pairs. 21804 records in RAM.
INFO 2026-06-08 09:11:56 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:116,278,509
INFO 2026-06-08 09:11:56 MarkDuplicates Tracking 1109690 as yet unmatched pairs. 19421 records in RAM.
INFO 2026-06-08 09:11:57 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:130,865,466
INFO 2026-06-08 09:11:57 MarkDuplicates Tracking 1107590 as yet unmatched pairs. 17307 records in RAM.
INFO 2026-06-08 09:11:59 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:137,881,351
INFO 2026-06-08 09:11:59 MarkDuplicates Tracking 1104176 as yet unmatched pairs. 13875 records in RAM.
INFO 2026-06-08 09:12:01 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:149,379,036
INFO 2026-06-08 09:12:01 MarkDuplicates Tracking 1102226 as yet unmatched pairs. 11894 records in RAM.
INFO 2026-06-08 09:12:03 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:155,275,877
INFO 2026-06-08 09:12:03 MarkDuplicates Tracking 1099134 as yet unmatched pairs. 8776 records in RAM.
INFO 2026-06-08 09:12:04 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr6:159,035,917
INFO 2026-06-08 09:12:04 MarkDuplicates Tracking 1096512 as yet unmatched pairs. 6121 records in RAM.
INFO 2026-06-08 09:12:06 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:161,115,124
INFO 2026-06-08 09:12:06 MarkDuplicates Tracking 1093922 as yet unmatched pairs. 3512 records in RAM.
INFO 2026-06-08 09:12:08 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:169,248,465
INFO 2026-06-08 09:12:08 MarkDuplicates Tracking 1094071 as yet unmatched pairs. 3655 records in RAM.
INFO 2026-06-08 09:12:11 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 3s. Last read position: chr7:1,539,993
INFO 2026-06-08 09:12:11 MarkDuplicates Tracking 1088818 as yet unmatched pairs. 92771 records in RAM.
INFO 2026-06-08 09:12:13 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr7:5,314,984
INFO 2026-06-08 09:12:13 MarkDuplicates Tracking 1086703 as yet unmatched pairs. 90638 records in RAM.
INFO 2026-06-08 09:12:15 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,849
INFO 2026-06-08 09:12:15 MarkDuplicates Tracking 1098707 as yet unmatched pairs. 102621 records in RAM.
INFO 2026-06-08 09:12:17 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,546
INFO 2026-06-08 09:12:17 MarkDuplicates Tracking 1104502 as yet unmatched pairs. 108410 records in RAM.
INFO 2026-06-08 09:12:19 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:5,593,323
INFO 2026-06-08 09:12:19 MarkDuplicates Tracking 1077285 as yet unmatched pairs. 81192 records in RAM.
INFO 2026-06-08 09:12:20 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:16,797,663
INFO 2026-06-08 09:12:20 MarkDuplicates Tracking 1076385 as yet unmatched pairs. 80289 records in RAM.
INFO 2026-06-08 09:12:22 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:27,543,003
INFO 2026-06-08 09:12:22 MarkDuplicates Tracking 1071938 as yet unmatched pairs. 75839 records in RAM.
INFO 2026-06-08 09:12:24 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:37,914,447
INFO 2026-06-08 09:12:24 MarkDuplicates Tracking 1070537 as yet unmatched pairs. 74407 records in RAM.
INFO 2026-06-08 09:12:26 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:44,110,331
INFO 2026-06-08 09:12:26 MarkDuplicates Tracking 1069461 as yet unmatched pairs. 73323 records in RAM.
INFO 2026-06-08 09:12:27 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:45,074,255
INFO 2026-06-08 09:12:27 MarkDuplicates Tracking 1063804 as yet unmatched pairs. 67655 records in RAM.
INFO 2026-06-08 09:12:29 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:55,707,303
INFO 2026-06-08 09:12:29 MarkDuplicates Tracking 1060791 as yet unmatched pairs. 64626 records in RAM.
INFO 2026-06-08 09:12:31 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:73,022,206
INFO 2026-06-08 09:12:31 MarkDuplicates Tracking 1058345 as yet unmatched pairs. 62152 records in RAM.
INFO 2026-06-08 09:12:33 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:74,066,742
INFO 2026-06-08 09:12:33 MarkDuplicates Tracking 1056885 as yet unmatched pairs. 60688 records in RAM.
INFO 2026-06-08 09:12:34 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:75,879,123
INFO 2026-06-08 09:12:34 MarkDuplicates Tracking 1054637 as yet unmatched pairs. 58434 records in RAM.
INFO 2026-06-08 09:12:36 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:77,000,307
INFO 2026-06-08 09:12:36 MarkDuplicates Tracking 1051208 as yet unmatched pairs. 54995 records in RAM.
INFO 2026-06-08 09:12:38 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:92,102,796
INFO 2026-06-08 09:12:38 MarkDuplicates Tracking 1049686 as yet unmatched pairs. 53461 records in RAM.
INFO 2026-06-08 09:12:40 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:94,409,583
INFO 2026-06-08 09:12:40 MarkDuplicates Tracking 1055432 as yet unmatched pairs. 59196 records in RAM.
INFO 2026-06-08 09:12:42 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:94,424,413
INFO 2026-06-08 09:12:42 MarkDuplicates Tracking 1052105 as yet unmatched pairs. 55841 records in RAM.
INFO 2026-06-08 09:12:43 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:98,306,441
INFO 2026-06-08 09:12:43 MarkDuplicates Tracking 1041012 as yet unmatched pairs. 44736 records in RAM.
INFO 2026-06-08 09:12:45 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:100,095,905
INFO 2026-06-08 09:12:45 MarkDuplicates Tracking 1038707 as yet unmatched pairs. 42414 records in RAM.
INFO 2026-06-08 09:12:47 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:100,823,727
INFO 2026-06-08 09:12:47 MarkDuplicates Tracking 1036123 as yet unmatched pairs. 39813 records in RAM.
INFO 2026-06-08 09:12:48 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,394
INFO 2026-06-08 09:12:48 MarkDuplicates Tracking 1035277 as yet unmatched pairs. 38960 records in RAM.
INFO 2026-06-08 09:12:50 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,330
INFO 2026-06-08 09:12:50 MarkDuplicates Tracking 1036059 as yet unmatched pairs. 39742 records in RAM.
INFO 2026-06-08 09:12:51 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,602
INFO 2026-06-08 09:12:51 MarkDuplicates Tracking 1038332 as yet unmatched pairs. 42014 records in RAM.
INFO 2026-06-08 09:12:52 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,936
INFO 2026-06-08 09:12:52 MarkDuplicates Tracking 1056506 as yet unmatched pairs. 60177 records in RAM.
INFO 2026-06-08 09:12:54 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,265
INFO 2026-06-08 09:12:54 MarkDuplicates Tracking 1038799 as yet unmatched pairs. 42469 records in RAM.
INFO 2026-06-08 09:12:56 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,518
INFO 2026-06-08 09:12:56 MarkDuplicates Tracking 1034588 as yet unmatched pairs. 38251 records in RAM.
INFO 2026-06-08 09:12:57 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,599
INFO 2026-06-08 09:12:57 MarkDuplicates Tracking 1030044 as yet unmatched pairs. 33696 records in RAM.
INFO 2026-06-08 09:12:58 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,966
INFO 2026-06-08 09:12:58 MarkDuplicates Tracking 1027695 as yet unmatched pairs. 31344 records in RAM.
INFO 2026-06-08 09:13:00 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:102,469,860
INFO 2026-06-08 09:13:00 MarkDuplicates Tracking 1025397 as yet unmatched pairs. 29032 records in RAM.
INFO 2026-06-08 09:13:02 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr7:107,298,275
INFO 2026-06-08 09:13:02 MarkDuplicates Tracking 1023605 as yet unmatched pairs. 27207 records in RAM.
INFO 2026-06-08 09:13:05 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 2s. Last read position: chr7:116,700,126
INFO 2026-06-08 09:13:05 MarkDuplicates Tracking 1024107 as yet unmatched pairs. 27684 records in RAM.
INFO 2026-06-08 09:13:06 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr7:123,692,565
INFO 2026-06-08 09:13:06 MarkDuplicates Tracking 1019145 as yet unmatched pairs. 22706 records in RAM.
INFO 2026-06-08 09:14:12 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 65s. Last read position: chr7:128,400,172
INFO 2026-06-08 09:14:12 MarkDuplicates Tracking 1016593 as yet unmatched pairs. 20148 records in RAM.
INFO 2026-06-08 09:14:13 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr7:133,035,820
INFO 2026-06-08 09:14:13 MarkDuplicates Tracking 1013658 as yet unmatched pairs. 17198 records in RAM.
INFO 2026-06-08 09:14:15 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr7:139,109,029
INFO 2026-06-08 09:14:15 MarkDuplicates Tracking 1011385 as yet unmatched pairs. 14891 records in RAM.
INFO 2026-06-08 09:14:17 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:143,383,018
INFO 2026-06-08 09:14:17 MarkDuplicates Tracking 1013839 as yet unmatched pairs. 17330 records in RAM.
INFO 2026-06-08 09:14:18 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr7:149,008,162
INFO 2026-06-08 09:14:18 MarkDuplicates Tracking 1007720 as yet unmatched pairs. 11205 records in RAM.
INFO 2026-06-08 09:14:19 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr7:150,857,188
INFO 2026-06-08 09:14:19 MarkDuplicates Tracking 1005057 as yet unmatched pairs. 8526 records in RAM.
INFO 2026-06-08 09:14:22 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 2s. Last read position: chr7:151,238,551
INFO 2026-06-08 09:14:22 MarkDuplicates Tracking 1000855 as yet unmatched pairs. 4319 records in RAM.
INFO 2026-06-08 09:14:24 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr7:157,254,265
INFO 2026-06-08 09:14:24 MarkDuplicates Tracking 998321 as yet unmatched pairs. 1766 records in RAM.
INFO 2026-06-08 09:14:25 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:11,845,682
INFO 2026-06-08 09:14:25 MarkDuplicates Tracking 1000641 as yet unmatched pairs. 62548 records in RAM.
INFO 2026-06-08 09:14:27 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:22,569,273
INFO 2026-06-08 09:14:27 MarkDuplicates Tracking 992749 as yet unmatched pairs. 54646 records in RAM.
INFO 2026-06-08 09:14:29 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:27,909,688
INFO 2026-06-08 09:14:29 MarkDuplicates Tracking 989538 as yet unmatched pairs. 51414 records in RAM.
INFO 2026-06-08 09:14:30 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:37,698,486
INFO 2026-06-08 09:14:30 MarkDuplicates Tracking 987907 as yet unmatched pairs. 49769 records in RAM.
INFO 2026-06-08 09:14:32 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:38,820,000
INFO 2026-06-08 09:14:32 MarkDuplicates Tracking 985330 as yet unmatched pairs. 47178 records in RAM.
INFO 2026-06-08 09:14:34 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:47,735,340
INFO 2026-06-08 09:14:34 MarkDuplicates Tracking 981588 as yet unmatched pairs. 43426 records in RAM.
INFO 2026-06-08 09:14:35 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:58,609,677
INFO 2026-06-08 09:14:35 MarkDuplicates Tracking 978992 as yet unmatched pairs. 40811 records in RAM.
INFO 2026-06-08 09:14:37 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:70,156,569
INFO 2026-06-08 09:14:37 MarkDuplicates Tracking 976766 as yet unmatched pairs. 38561 records in RAM.
INFO 2026-06-08 09:14:38 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:86,380,781
INFO 2026-06-08 09:14:38 MarkDuplicates Tracking 974645 as yet unmatched pairs. 36422 records in RAM.
INFO 2026-06-08 09:14:40 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:99,121,433
INFO 2026-06-08 09:14:40 MarkDuplicates Tracking 971786 as yet unmatched pairs. 33543 records in RAM.
INFO 2026-06-08 09:14:41 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:103,053,922
INFO 2026-06-08 09:14:41 MarkDuplicates Tracking 969330 as yet unmatched pairs. 31069 records in RAM.
INFO 2026-06-08 09:14:43 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:120,425,311
INFO 2026-06-08 09:14:43 MarkDuplicates Tracking 967341 as yet unmatched pairs. 29038 records in RAM.
INFO 2026-06-08 09:14:44 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,740
INFO 2026-06-08 09:14:44 MarkDuplicates Tracking 970095 as yet unmatched pairs. 31782 records in RAM.
INFO 2026-06-08 09:14:46 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:142,274,787
INFO 2026-06-08 09:14:46 MarkDuplicates Tracking 961278 as yet unmatched pairs. 22925 records in RAM.
INFO 2026-06-08 09:14:47 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,225
INFO 2026-06-08 09:14:47 MarkDuplicates Tracking 958951 as yet unmatched pairs. 20586 records in RAM.
INFO 2026-06-08 09:14:49 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,160
INFO 2026-06-08 09:14:49 MarkDuplicates Tracking 963388 as yet unmatched pairs. 25023 records in RAM.
INFO 2026-06-08 09:14:50 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,589
INFO 2026-06-08 09:14:50 MarkDuplicates Tracking 961568 as yet unmatched pairs. 23203 records in RAM.
INFO 2026-06-08 09:14:51 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,403
INFO 2026-06-08 09:14:51 MarkDuplicates Tracking 956765 as yet unmatched pairs. 18399 records in RAM.
INFO 2026-06-08 09:14:52 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,280
INFO 2026-06-08 09:14:52 MarkDuplicates Tracking 960772 as yet unmatched pairs. 22403 records in RAM.
INFO 2026-06-08 09:14:53 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,106
INFO 2026-06-08 09:14:53 MarkDuplicates Tracking 963417 as yet unmatched pairs. 25046 records in RAM.
INFO 2026-06-08 09:14:54 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,927
INFO 2026-06-08 09:14:54 MarkDuplicates Tracking 951175 as yet unmatched pairs. 12800 records in RAM.
INFO 2026-06-08 09:14:56 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,991
INFO 2026-06-08 09:14:56 MarkDuplicates Tracking 954185 as yet unmatched pairs. 15810 records in RAM.
INFO 2026-06-08 09:14:57 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,994
INFO 2026-06-08 09:14:57 MarkDuplicates Tracking 949707 as yet unmatched pairs. 11331 records in RAM.
INFO 2026-06-08 09:14:58 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr8:143,871,047
INFO 2026-06-08 09:14:58 MarkDuplicates Tracking 949851 as yet unmatched pairs. 11466 records in RAM.
INFO 2026-06-08 09:14:59 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:143,922,697
INFO 2026-06-08 09:14:59 MarkDuplicates Tracking 946761 as yet unmatched pairs. 8357 records in RAM.
INFO 2026-06-08 09:15:01 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr8:144,084,861
INFO 2026-06-08 09:15:01 MarkDuplicates Tracking 942583 as yet unmatched pairs. 4157 records in RAM.
INFO 2026-06-08 09:15:04 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 2s. Last read position: chr8:144,791,339
INFO 2026-06-08 09:15:04 MarkDuplicates Tracking 939642 as yet unmatched pairs. 1209 records in RAM.
INFO 2026-06-08 09:15:06 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr9:14,116,187
INFO 2026-06-08 09:15:06 MarkDuplicates Tracking 938442 as yet unmatched pairs. 58905 records in RAM.
INFO 2026-06-08 09:15:07 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:25,677,956
INFO 2026-06-08 09:15:07 MarkDuplicates Tracking 934225 as yet unmatched pairs. 54663 records in RAM.
INFO 2026-06-08 09:15:09 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:35,057,014
INFO 2026-06-08 09:15:09 MarkDuplicates Tracking 932082 as yet unmatched pairs. 52507 records in RAM.
INFO 2026-06-08 09:15:10 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:35,713,213
INFO 2026-06-08 09:15:10 MarkDuplicates Tracking 928966 as yet unmatched pairs. 49381 records in RAM.
INFO 2026-06-08 09:15:12 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:65,193,465
INFO 2026-06-08 09:15:12 MarkDuplicates Tracking 925852 as yet unmatched pairs. 46235 records in RAM.
INFO 2026-06-08 09:15:13 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:77,357,813
INFO 2026-06-08 09:15:13 MarkDuplicates Tracking 923710 as yet unmatched pairs. 44078 records in RAM.
INFO 2026-06-08 09:15:15 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr9:91,410,603
INFO 2026-06-08 09:15:15 MarkDuplicates Tracking 921024 as yet unmatched pairs. 41379 records in RAM.
INFO 2026-06-08 09:15:17 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:95,468,824
INFO 2026-06-08 09:15:17 MarkDuplicates Tracking 918349 as yet unmatched pairs. 38681 records in RAM.
INFO 2026-06-08 09:15:18 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:104,134,434
INFO 2026-06-08 09:15:18 MarkDuplicates Tracking 915421 as yet unmatched pairs. 35743 records in RAM.
INFO 2026-06-08 09:15:20 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:110,546,207
INFO 2026-06-08 09:15:20 MarkDuplicates Tracking 912807 as yet unmatched pairs. 33108 records in RAM.
INFO 2026-06-08 09:15:21 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:115,035,280
INFO 2026-06-08 09:15:21 MarkDuplicates Tracking 911864 as yet unmatched pairs. 32152 records in RAM.
INFO 2026-06-08 09:15:23 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:121,989,160
INFO 2026-06-08 09:15:23 MarkDuplicates Tracking 907346 as yet unmatched pairs. 27611 records in RAM.
INFO 2026-06-08 09:15:24 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:127,449,310
INFO 2026-06-08 09:15:24 MarkDuplicates Tracking 909601 as yet unmatched pairs. 29856 records in RAM.
INFO 2026-06-08 09:15:26 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:128,180,477
INFO 2026-06-08 09:15:26 MarkDuplicates Tracking 901984 as yet unmatched pairs. 22231 records in RAM.
INFO 2026-06-08 09:15:28 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:128,908,043
INFO 2026-06-08 09:15:28 MarkDuplicates Tracking 899384 as yet unmatched pairs. 19623 records in RAM.
INFO 2026-06-08 09:15:29 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:130,863,021
INFO 2026-06-08 09:15:29 MarkDuplicates Tracking 897110 as yet unmatched pairs. 17326 records in RAM.
INFO 2026-06-08 09:15:31 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:133,098,462
INFO 2026-06-08 09:15:31 MarkDuplicates Tracking 893918 as yet unmatched pairs. 14116 records in RAM.
INFO 2026-06-08 09:15:32 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr9:134,763,728
INFO 2026-06-08 09:15:32 MarkDuplicates Tracking 893507 as yet unmatched pairs. 13679 records in RAM.
INFO 2026-06-08 09:15:34 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr9:136,474,253
INFO 2026-06-08 09:15:34 MarkDuplicates Tracking 888628 as yet unmatched pairs. 8793 records in RAM.
INFO 2026-06-08 09:15:36 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr9:136,942,854
INFO 2026-06-08 09:15:36 MarkDuplicates Tracking 886103 as yet unmatched pairs. 6254 records in RAM.
INFO 2026-06-08 09:15:38 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr9:137,257,041
INFO 2026-06-08 09:15:38 MarkDuplicates Tracking 882042 as yet unmatched pairs. 2188 records in RAM.
INFO 2026-06-08 09:15:41 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr10:3,780,220
INFO 2026-06-08 09:15:41 MarkDuplicates Tracking 879497 as yet unmatched pairs. 53686 records in RAM.
INFO 2026-06-08 09:15:42 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:12,250,390
INFO 2026-06-08 09:15:42 MarkDuplicates Tracking 876144 as yet unmatched pairs. 50311 records in RAM.
INFO 2026-06-08 09:15:44 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:24,524,398
INFO 2026-06-08 09:15:44 MarkDuplicates Tracking 874336 as yet unmatched pairs. 48475 records in RAM.
INFO 2026-06-08 09:15:45 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr10:30,047,549
INFO 2026-06-08 09:15:45 MarkDuplicates Tracking 871368 as yet unmatched pairs. 45493 records in RAM.
INFO 2026-06-08 09:15:47 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:32,037,574
INFO 2026-06-08 09:15:47 MarkDuplicates Tracking 877924 as yet unmatched pairs. 52043 records in RAM.
INFO 2026-06-08 09:15:48 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:42,792,500
INFO 2026-06-08 09:15:48 MarkDuplicates Tracking 866728 as yet unmatched pairs. 40828 records in RAM.
INFO 2026-06-08 09:15:50 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:50,093,320
INFO 2026-06-08 09:15:50 MarkDuplicates Tracking 864516 as yet unmatched pairs. 38605 records in RAM.
INFO 2026-06-08 09:15:51 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:69,103,997
INFO 2026-06-08 09:15:51 MarkDuplicates Tracking 862498 as yet unmatched pairs. 36565 records in RAM.
INFO 2026-06-08 09:15:53 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:73,647,017
INFO 2026-06-08 09:15:53 MarkDuplicates Tracking 859405 as yet unmatched pairs. 33447 records in RAM.
INFO 2026-06-08 09:15:54 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:77,027,876
INFO 2026-06-08 09:15:54 MarkDuplicates Tracking 857222 as yet unmatched pairs. 31250 records in RAM.
INFO 2026-06-08 09:15:56 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:78,035,514
INFO 2026-06-08 09:15:56 MarkDuplicates Tracking 877604 as yet unmatched pairs. 51625 records in RAM.
INFO 2026-06-08 09:15:58 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:78,037,244
INFO 2026-06-08 09:15:58 MarkDuplicates Tracking 863678 as yet unmatched pairs. 37688 records in RAM.
INFO 2026-06-08 09:15:59 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:79,349,088
INFO 2026-06-08 09:15:59 MarkDuplicates Tracking 859823 as yet unmatched pairs. 33824 records in RAM.
INFO 2026-06-08 09:16:01 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:80,164,086
INFO 2026-06-08 09:16:01 MarkDuplicates Tracking 852441 as yet unmatched pairs. 26429 records in RAM.
INFO 2026-06-08 09:16:03 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr10:86,892,159
INFO 2026-06-08 09:16:03 MarkDuplicates Tracking 844330 as yet unmatched pairs. 18300 records in RAM.
INFO 2026-06-08 09:16:04 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:93,329,809
INFO 2026-06-08 09:16:04 MarkDuplicates Tracking 842149 as yet unmatched pairs. 16102 records in RAM.
INFO 2026-06-08 09:16:06 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr10:97,430,644
INFO 2026-06-08 09:16:06 MarkDuplicates Tracking 840641 as yet unmatched pairs. 14585 records in RAM.
INFO 2026-06-08 09:16:08 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr10:102,157,219
INFO 2026-06-08 09:16:08 MarkDuplicates Tracking 837095 as yet unmatched pairs. 11034 records in RAM.
INFO 2026-06-08 09:16:11 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr10:109,877,804
INFO 2026-06-08 09:16:11 MarkDuplicates Tracking 833900 as yet unmatched pairs. 7838 records in RAM.
INFO 2026-06-08 09:16:12 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr10:119,132,525
INFO 2026-06-08 09:16:12 MarkDuplicates Tracking 831115 as yet unmatched pairs. 5036 records in RAM.
INFO 2026-06-08 09:16:14 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr10:122,617,239
INFO 2026-06-08 09:16:14 MarkDuplicates Tracking 829426 as yet unmatched pairs. 3336 records in RAM.
INFO 2026-06-08 09:16:15 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr10:133,398,443
INFO 2026-06-08 09:16:15 MarkDuplicates Tracking 826290 as yet unmatched pairs. 184 records in RAM.
INFO 2026-06-08 09:16:18 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr11:394,267
INFO 2026-06-08 09:16:18 MarkDuplicates Tracking 825060 as yet unmatched pairs. 99853 records in RAM.
INFO 2026-06-08 09:16:19 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:810,345
INFO 2026-06-08 09:16:19 MarkDuplicates Tracking 823221 as yet unmatched pairs. 98009 records in RAM.
INFO 2026-06-08 09:16:21 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:1,565,633
INFO 2026-06-08 09:16:21 MarkDuplicates Tracking 817896 as yet unmatched pairs. 92665 records in RAM.
INFO 2026-06-08 09:16:22 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:2,929,019
INFO 2026-06-08 09:16:22 MarkDuplicates Tracking 816218 as yet unmatched pairs. 90965 records in RAM.
INFO 2026-06-08 09:16:24 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:6,617,330
INFO 2026-06-08 09:16:24 MarkDuplicates Tracking 812327 as yet unmatched pairs. 87059 records in RAM.
INFO 2026-06-08 09:16:25 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:10,493,446
INFO 2026-06-08 09:16:25 MarkDuplicates Tracking 808900 as yet unmatched pairs. 83618 records in RAM.
INFO 2026-06-08 09:16:27 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:14,294,761
INFO 2026-06-08 09:16:27 MarkDuplicates Tracking 806673 as yet unmatched pairs. 81374 records in RAM.
INFO 2026-06-08 09:16:29 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:20,364,387
INFO 2026-06-08 09:16:29 MarkDuplicates Tracking 804768 as yet unmatched pairs. 79456 records in RAM.
INFO 2026-06-08 09:16:30 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:34,888,396
INFO 2026-06-08 09:16:30 MarkDuplicates Tracking 801654 as yet unmatched pairs. 76313 records in RAM.
INFO 2026-06-08 09:16:32 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:46,312,886
INFO 2026-06-08 09:16:32 MarkDuplicates Tracking 800997 as yet unmatched pairs. 75633 records in RAM.
INFO 2026-06-08 09:16:34 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:47,413,492
INFO 2026-06-08 09:16:34 MarkDuplicates Tracking 796868 as yet unmatched pairs. 71497 records in RAM.
INFO 2026-06-08 09:16:35 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:57,690,063
INFO 2026-06-08 09:16:35 MarkDuplicates Tracking 793568 as yet unmatched pairs. 68188 records in RAM.
INFO 2026-06-08 09:16:37 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:60,934,527
INFO 2026-06-08 09:16:37 MarkDuplicates Tracking 790926 as yet unmatched pairs. 65543 records in RAM.
INFO 2026-06-08 09:16:39 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:62,516,880
INFO 2026-06-08 09:16:39 MarkDuplicates Tracking 788919 as yet unmatched pairs. 63519 records in RAM.
INFO 2026-06-08 09:16:40 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:62,525,370
INFO 2026-06-08 09:16:40 MarkDuplicates Tracking 789045 as yet unmatched pairs. 63636 records in RAM.
INFO 2026-06-08 09:16:42 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:62,533,243
INFO 2026-06-08 09:16:42 MarkDuplicates Tracking 784901 as yet unmatched pairs. 59487 records in RAM.
INFO 2026-06-08 09:16:43 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:62,707,120
INFO 2026-06-08 09:16:43 MarkDuplicates Tracking 781386 as yet unmatched pairs. 55955 records in RAM.
INFO 2026-06-08 09:16:45 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:64,226,412
INFO 2026-06-08 09:16:45 MarkDuplicates Tracking 778767 as yet unmatched pairs. 53321 records in RAM.
INFO 2026-06-08 09:16:47 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:64,770,010
INFO 2026-06-08 09:16:47 MarkDuplicates Tracking 775659 as yet unmatched pairs. 50213 records in RAM.
INFO 2026-06-08 09:16:49 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 2s. Last read position: chr11:65,206,628
INFO 2026-06-08 09:16:49 MarkDuplicates Tracking 775224 as yet unmatched pairs. 49763 records in RAM.
INFO 2026-06-08 09:16:50 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:65,606,044
INFO 2026-06-08 09:16:50 MarkDuplicates Tracking 769065 as yet unmatched pairs. 43559 records in RAM.
INFO 2026-06-08 09:16:52 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:65,865,219
INFO 2026-06-08 09:16:52 MarkDuplicates Tracking 766275 as yet unmatched pairs. 40760 records in RAM.
INFO 2026-06-08 09:16:54 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:66,624,744
INFO 2026-06-08 09:16:54 MarkDuplicates Tracking 764295 as yet unmatched pairs. 38779 records in RAM.
INFO 2026-06-08 09:16:56 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:67,440,758
INFO 2026-06-08 09:16:56 MarkDuplicates Tracking 760393 as yet unmatched pairs. 34864 records in RAM.
INFO 2026-06-08 09:16:57 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:68,357,729
INFO 2026-06-08 09:16:57 MarkDuplicates Tracking 757765 as yet unmatched pairs. 32231 records in RAM.
INFO 2026-06-08 09:16:59 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:70,185,606
INFO 2026-06-08 09:16:59 MarkDuplicates Tracking 754531 as yet unmatched pairs. 28991 records in RAM.
INFO 2026-06-08 09:17:00 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:72,697,470
INFO 2026-06-08 09:17:00 MarkDuplicates Tracking 751750 as yet unmatched pairs. 26199 records in RAM.
INFO 2026-06-08 09:17:02 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:75,402,423
INFO 2026-06-08 09:17:02 MarkDuplicates Tracking 752507 as yet unmatched pairs. 26942 records in RAM.
INFO 2026-06-08 09:17:04 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:78,493,175
INFO 2026-06-08 09:17:04 MarkDuplicates Tracking 746088 as yet unmatched pairs. 20519 records in RAM.
INFO 2026-06-08 09:17:05 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:94,870,688
INFO 2026-06-08 09:17:05 MarkDuplicates Tracking 743663 as yet unmatched pairs. 18067 records in RAM.
INFO 2026-06-08 09:17:07 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:102,836,015
INFO 2026-06-08 09:17:07 MarkDuplicates Tracking 741060 as yet unmatched pairs. 15463 records in RAM.
INFO 2026-06-08 09:17:08 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr11:114,312,193
INFO 2026-06-08 09:17:08 MarkDuplicates Tracking 739956 as yet unmatched pairs. 14348 records in RAM.
INFO 2026-06-08 09:17:10 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:118,436,508
INFO 2026-06-08 09:17:10 MarkDuplicates Tracking 735746 as yet unmatched pairs. 10110 records in RAM.
INFO 2026-06-08 09:17:11 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:119,081,480
INFO 2026-06-08 09:17:11 MarkDuplicates Tracking 733498 as yet unmatched pairs. 7854 records in RAM.
INFO 2026-06-08 09:17:13 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:123,057,808
INFO 2026-06-08 09:17:13 MarkDuplicates Tracking 733023 as yet unmatched pairs. 7366 records in RAM.
INFO 2026-06-08 09:17:15 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:128,970,014
INFO 2026-06-08 09:17:15 MarkDuplicates Tracking 728590 as yet unmatched pairs. 2922 records in RAM.
INFO 2026-06-08 09:17:17 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 2s. Last read position: chr12:331,858
INFO 2026-06-08 09:17:17 MarkDuplicates Tracking 725720 as yet unmatched pairs. 79276 records in RAM.
INFO 2026-06-08 09:17:19 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:6,200,525
INFO 2026-06-08 09:17:19 MarkDuplicates Tracking 725448 as yet unmatched pairs. 78983 records in RAM.
INFO 2026-06-08 09:17:21 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr12:6,766,619
INFO 2026-06-08 09:17:21 MarkDuplicates Tracking 722284 as yet unmatched pairs. 75797 records in RAM.
INFO 2026-06-08 09:17:22 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:7,085,969
INFO 2026-06-08 09:17:22 MarkDuplicates Tracking 719012 as yet unmatched pairs. 72524 records in RAM.
INFO 2026-06-08 09:17:24 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:10,702,035
INFO 2026-06-08 09:17:24 MarkDuplicates Tracking 716922 as yet unmatched pairs. 70415 records in RAM.
INFO 2026-06-08 09:17:26 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:15,631,493
INFO 2026-06-08 09:17:26 MarkDuplicates Tracking 713386 as yet unmatched pairs. 66873 records in RAM.
INFO 2026-06-08 09:17:28 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:32,733,754
INFO 2026-06-08 09:17:28 MarkDuplicates Tracking 710662 as yet unmatched pairs. 64141 records in RAM.
INFO 2026-06-08 09:17:29 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:47,795,320
INFO 2026-06-08 09:17:29 MarkDuplicates Tracking 708472 as yet unmatched pairs. 61930 records in RAM.
INFO 2026-06-08 09:17:31 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,581
INFO 2026-06-08 09:17:31 MarkDuplicates Tracking 705474 as yet unmatched pairs. 58929 records in RAM.
INFO 2026-06-08 09:17:33 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:49,651,980
INFO 2026-06-08 09:17:33 MarkDuplicates Tracking 703519 as yet unmatched pairs. 56960 records in RAM.
INFO 2026-06-08 09:17:35 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 2s. Last read position: chr12:51,916,174
INFO 2026-06-08 09:17:35 MarkDuplicates Tracking 700659 as yet unmatched pairs. 54087 records in RAM.
INFO 2026-06-08 09:17:37 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:52,949,493
INFO 2026-06-08 09:17:37 MarkDuplicates Tracking 701141 as yet unmatched pairs. 54560 records in RAM.
INFO 2026-06-08 09:17:39 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,566
INFO 2026-06-08 09:17:39 MarkDuplicates Tracking 701567 as yet unmatched pairs. 54982 records in RAM.
INFO 2026-06-08 09:17:40 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:54,396,365
INFO 2026-06-08 09:17:40 MarkDuplicates Tracking 693729 as yet unmatched pairs. 47129 records in RAM.
INFO 2026-06-08 09:17:42 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:56,116,720
INFO 2026-06-08 09:17:42 MarkDuplicates Tracking 690864 as yet unmatched pairs. 44246 records in RAM.
INFO 2026-06-08 09:17:44 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:56,600,276
INFO 2026-06-08 09:17:44 MarkDuplicates Tracking 688041 as yet unmatched pairs. 41420 records in RAM.
INFO 2026-06-08 09:17:45 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,535
INFO 2026-06-08 09:17:45 MarkDuplicates Tracking 687734 as yet unmatched pairs. 41107 records in RAM.
INFO 2026-06-08 09:17:47 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:57,176,096
INFO 2026-06-08 09:17:47 MarkDuplicates Tracking 684020 as yet unmatched pairs. 37384 records in RAM.
INFO 2026-06-08 09:17:49 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:57,268,311
INFO 2026-06-08 09:17:49 MarkDuplicates Tracking 680600 as yet unmatched pairs. 33958 records in RAM.
INFO 2026-06-08 09:17:50 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:62,965,686
INFO 2026-06-08 09:17:50 MarkDuplicates Tracking 678599 as yet unmatched pairs. 31955 records in RAM.
INFO 2026-06-08 09:17:52 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:70,745,882
INFO 2026-06-08 09:17:52 MarkDuplicates Tracking 675364 as yet unmatched pairs. 28700 records in RAM.
INFO 2026-06-08 09:17:54 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 2s. Last read position: chr12:88,118,703
INFO 2026-06-08 09:17:54 MarkDuplicates Tracking 672760 as yet unmatched pairs. 26087 records in RAM.
INFO 2026-06-08 09:17:55 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:95,092,728
INFO 2026-06-08 09:17:55 MarkDuplicates Tracking 670674 as yet unmatched pairs. 23975 records in RAM.
INFO 2026-06-08 09:17:57 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:102,197,063
INFO 2026-06-08 09:17:57 MarkDuplicates Tracking 668046 as yet unmatched pairs. 21345 records in RAM.
INFO 2026-06-08 09:17:58 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:108,647,446
INFO 2026-06-08 09:17:58 MarkDuplicates Tracking 666418 as yet unmatched pairs. 19712 records in RAM.
INFO 2026-06-08 09:18:00 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:111,555,884
INFO 2026-06-08 09:18:00 MarkDuplicates Tracking 663034 as yet unmatched pairs. 16321 records in RAM.
INFO 2026-06-08 09:18:02 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr12:113,306,528
INFO 2026-06-08 09:18:02 MarkDuplicates Tracking 660699 as yet unmatched pairs. 13982 records in RAM.
INFO 2026-06-08 09:18:04 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:120,198,633
INFO 2026-06-08 09:18:04 MarkDuplicates Tracking 659394 as yet unmatched pairs. 12648 records in RAM.
INFO 2026-06-08 09:18:05 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:121,822,967
INFO 2026-06-08 09:18:05 MarkDuplicates Tracking 655137 as yet unmatched pairs. 8377 records in RAM.
INFO 2026-06-08 09:18:07 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:124,012,779
INFO 2026-06-08 09:18:07 MarkDuplicates Tracking 653061 as yet unmatched pairs. 6290 records in RAM.
INFO 2026-06-08 09:18:08 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:131,727,050
INFO 2026-06-08 09:18:08 MarkDuplicates Tracking 649550 as yet unmatched pairs. 2770 records in RAM.
INFO 2026-06-08 09:18:10 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr13:19,993,072
INFO 2026-06-08 09:18:10 MarkDuplicates Tracking 648728 as yet unmatched pairs. 28298 records in RAM.
INFO 2026-06-08 09:18:12 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr13:25,301,716
INFO 2026-06-08 09:18:12 MarkDuplicates Tracking 644540 as yet unmatched pairs. 24102 records in RAM.
INFO 2026-06-08 09:18:13 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr13:32,535,888
INFO 2026-06-08 09:18:13 MarkDuplicates Tracking 642332 as yet unmatched pairs. 21882 records in RAM.
INFO 2026-06-08 09:18:15 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr13:42,166,642
INFO 2026-06-08 09:18:15 MarkDuplicates Tracking 639474 as yet unmatched pairs. 19018 records in RAM.
INFO 2026-06-08 09:18:17 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr13:48,253,838
INFO 2026-06-08 09:18:17 MarkDuplicates Tracking 640058 as yet unmatched pairs. 19586 records in RAM.
INFO 2026-06-08 09:18:18 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr13:73,059,477
INFO 2026-06-08 09:18:18 MarkDuplicates Tracking 635969 as yet unmatched pairs. 15497 records in RAM.
INFO 2026-06-08 09:18:20 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr13:80,337,022
INFO 2026-06-08 09:18:20 MarkDuplicates Tracking 632292 as yet unmatched pairs. 11804 records in RAM.
INFO 2026-06-08 09:18:21 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr13:101,719,724
INFO 2026-06-08 09:18:21 MarkDuplicates Tracking 629023 as yet unmatched pairs. 8519 records in RAM.
INFO 2026-06-08 09:18:23 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr13:110,210,188
INFO 2026-06-08 09:18:23 MarkDuplicates Tracking 628248 as yet unmatched pairs. 7737 records in RAM.
INFO 2026-06-08 09:18:24 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr13:111,283,006
INFO 2026-06-08 09:18:24 MarkDuplicates Tracking 622973 as yet unmatched pairs. 2448 records in RAM.
INFO 2026-06-08 09:18:26 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:20,455,943
INFO 2026-06-08 09:18:26 MarkDuplicates Tracking 620543 as yet unmatched pairs. 50810 records in RAM.
INFO 2026-06-08 09:18:28 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:22,774,104
INFO 2026-06-08 09:18:28 MarkDuplicates Tracking 617832 as yet unmatched pairs. 48088 records in RAM.
INFO 2026-06-08 09:18:30 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 2s. Last read position: chr14:23,097,771
INFO 2026-06-08 09:18:30 MarkDuplicates Tracking 615347 as yet unmatched pairs. 45603 records in RAM.
INFO 2026-06-08 09:18:32 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr14:24,242,162
INFO 2026-06-08 09:18:32 MarkDuplicates Tracking 612178 as yet unmatched pairs. 42427 records in RAM.
INFO 2026-06-08 09:18:34 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr14:34,603,417
INFO 2026-06-08 09:18:34 MarkDuplicates Tracking 609846 as yet unmatched pairs. 40088 records in RAM.
INFO 2026-06-08 09:18:36 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:49,740,118
INFO 2026-06-08 09:18:36 MarkDuplicates Tracking 606850 as yet unmatched pairs. 37017 records in RAM.
INFO 2026-06-08 09:18:37 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr14:54,775,070
INFO 2026-06-08 09:18:37 MarkDuplicates Tracking 604675 as yet unmatched pairs. 34804 records in RAM.
INFO 2026-06-08 09:18:39 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:60,107,633
INFO 2026-06-08 09:18:39 MarkDuplicates Tracking 602254 as yet unmatched pairs. 32366 records in RAM.
INFO 2026-06-08 09:18:41 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:65,669,395
INFO 2026-06-08 09:18:41 MarkDuplicates Tracking 599484 as yet unmatched pairs. 29585 records in RAM.
INFO 2026-06-08 09:18:42 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr14:69,678,678
INFO 2026-06-08 09:18:42 MarkDuplicates Tracking 596975 as yet unmatched pairs. 27067 records in RAM.
INFO 2026-06-08 09:18:44 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:74,502,747
INFO 2026-06-08 09:18:44 MarkDuplicates Tracking 594933 as yet unmatched pairs. 25007 records in RAM.
INFO 2026-06-08 09:18:45 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:75,766,328
INFO 2026-06-08 09:18:45 MarkDuplicates Tracking 591511 as yet unmatched pairs. 21580 records in RAM.
INFO 2026-06-08 09:18:47 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:91,481,691
INFO 2026-06-08 09:18:47 MarkDuplicates Tracking 589035 as yet unmatched pairs. 19085 records in RAM.
INFO 2026-06-08 09:18:48 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr14:96,531,573
INFO 2026-06-08 09:18:48 MarkDuplicates Tracking 587225 as yet unmatched pairs. 17270 records in RAM.
INFO 2026-06-08 09:18:50 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:102,040,275
INFO 2026-06-08 09:18:50 MarkDuplicates Tracking 584538 as yet unmatched pairs. 14574 records in RAM.
INFO 2026-06-08 09:18:52 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:103,522,025
INFO 2026-06-08 09:18:52 MarkDuplicates Tracking 581063 as yet unmatched pairs. 11093 records in RAM.
INFO 2026-06-08 09:18:53 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:104,887,670
INFO 2026-06-08 09:18:53 MarkDuplicates Tracking 578992 as yet unmatched pairs. 9013 records in RAM.
INFO 2026-06-08 09:18:55 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:104,947,091
INFO 2026-06-08 09:18:55 MarkDuplicates Tracking 581291 as yet unmatched pairs. 11310 records in RAM.
INFO 2026-06-08 09:18:56 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr14:105,382,580
INFO 2026-06-08 09:18:56 MarkDuplicates Tracking 573205 as yet unmatched pairs. 3224 records in RAM.
INFO 2026-06-08 09:18:57 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,807
INFO 2026-06-08 09:18:57 MarkDuplicates Tracking 575459 as yet unmatched pairs. 5474 records in RAM.
INFO 2026-06-08 09:18:59 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr15:28,650,654
INFO 2026-06-08 09:18:59 MarkDuplicates Tracking 568508 as yet unmatched pairs. 51126 records in RAM.
INFO 2026-06-08 09:19:01 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr15:32,732,577
INFO 2026-06-08 09:19:01 MarkDuplicates Tracking 568993 as yet unmatched pairs. 51607 records in RAM.
INFO 2026-06-08 09:19:03 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr15:39,584,031
INFO 2026-06-08 09:19:03 MarkDuplicates Tracking 565495 as yet unmatched pairs. 48095 records in RAM.
INFO 2026-06-08 09:19:05 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:40,844,504
INFO 2026-06-08 09:19:05 MarkDuplicates Tracking 562917 as yet unmatched pairs. 45510 records in RAM.
INFO 2026-06-08 09:19:06 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr15:42,327,429
INFO 2026-06-08 09:19:06 MarkDuplicates Tracking 558449 as yet unmatched pairs. 41037 records in RAM.
INFO 2026-06-08 09:19:08 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr15:43,756,652
INFO 2026-06-08 09:19:08 MarkDuplicates Tracking 558036 as yet unmatched pairs. 40623 records in RAM.
INFO 2026-06-08 09:19:09 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr15:44,715,682
INFO 2026-06-08 09:19:09 MarkDuplicates Tracking 559786 as yet unmatched pairs. 42362 records in RAM.
INFO 2026-06-08 09:19:11 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr15:48,610,741
INFO 2026-06-08 09:19:11 MarkDuplicates Tracking 551687 as yet unmatched pairs. 34253 records in RAM.
INFO 2026-06-08 09:19:12 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr15:57,091,801
INFO 2026-06-08 09:19:12 MarkDuplicates Tracking 549799 as yet unmatched pairs. 32362 records in RAM.
INFO 2026-06-08 09:19:14 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 2s. Last read position: chr15:60,382,415
INFO 2026-06-08 09:19:14 MarkDuplicates Tracking 547850 as yet unmatched pairs. 30412 records in RAM.
INFO 2026-06-08 09:19:17 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 2s. Last read position: chr15:63,749,457
INFO 2026-06-08 09:19:17 MarkDuplicates Tracking 543499 as yet unmatched pairs. 26039 records in RAM.
INFO 2026-06-08 09:19:19 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr15:66,500,113
INFO 2026-06-08 09:19:19 MarkDuplicates Tracking 545095 as yet unmatched pairs. 27631 records in RAM.
INFO 2026-06-08 09:19:20 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:71,164,845
INFO 2026-06-08 09:19:20 MarkDuplicates Tracking 538437 as yet unmatched pairs. 20946 records in RAM.
INFO 2026-06-08 09:19:22 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:73,927,701
INFO 2026-06-08 09:19:22 MarkDuplicates Tracking 536728 as yet unmatched pairs. 19220 records in RAM.
INFO 2026-06-08 09:19:24 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:74,956,101
INFO 2026-06-08 09:19:24 MarkDuplicates Tracking 533369 as yet unmatched pairs. 15843 records in RAM.
INFO 2026-06-08 09:19:25 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:77,180,130
INFO 2026-06-08 09:19:25 MarkDuplicates Tracking 529766 as yet unmatched pairs. 12228 records in RAM.
INFO 2026-06-08 09:19:27 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:82,536,785
INFO 2026-06-08 09:19:27 MarkDuplicates Tracking 531696 as yet unmatched pairs. 14152 records in RAM.
INFO 2026-06-08 09:19:28 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:88,856,696
INFO 2026-06-08 09:19:28 MarkDuplicates Tracking 524840 as yet unmatched pairs. 7290 records in RAM.
INFO 2026-06-08 09:19:30 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr15:90,441,674
INFO 2026-06-08 09:19:30 MarkDuplicates Tracking 522280 as yet unmatched pairs. 4714 records in RAM.
INFO 2026-06-08 09:19:31 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr15:98,934,944
INFO 2026-06-08 09:19:31 MarkDuplicates Tracking 520089 as yet unmatched pairs. 2519 records in RAM.
INFO 2026-06-08 09:19:33 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr16:293,521
INFO 2026-06-08 09:19:33 MarkDuplicates Tracking 516870 as yet unmatched pairs. 85307 records in RAM.
INFO 2026-06-08 09:19:35 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:690,353
INFO 2026-06-08 09:19:35 MarkDuplicates Tracking 512994 as yet unmatched pairs. 81423 records in RAM.
INFO 2026-06-08 09:19:37 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:1,685,523
INFO 2026-06-08 09:19:37 MarkDuplicates Tracking 510314 as yet unmatched pairs. 78736 records in RAM.
INFO 2026-06-08 09:19:39 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:2,102,477
INFO 2026-06-08 09:19:39 MarkDuplicates Tracking 506706 as yet unmatched pairs. 75125 records in RAM.
INFO 2026-06-08 09:19:41 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 2s. Last read position: chr16:2,761,562
INFO 2026-06-08 09:19:41 MarkDuplicates Tracking 504393 as yet unmatched pairs. 72807 records in RAM.
INFO 2026-06-08 09:19:43 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr16:3,026,035
INFO 2026-06-08 09:19:43 MarkDuplicates Tracking 500718 as yet unmatched pairs. 69130 records in RAM.
INFO 2026-06-08 09:19:45 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:4,381,245
INFO 2026-06-08 09:19:45 MarkDuplicates Tracking 498373 as yet unmatched pairs. 66778 records in RAM.
INFO 2026-06-08 09:19:46 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:10,902,694
INFO 2026-06-08 09:19:46 MarkDuplicates Tracking 495053 as yet unmatched pairs. 63456 records in RAM.
INFO 2026-06-08 09:19:48 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:14,921,378
INFO 2026-06-08 09:19:48 MarkDuplicates Tracking 492987 as yet unmatched pairs. 61382 records in RAM.
INFO 2026-06-08 09:19:49 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:15,735,544
INFO 2026-06-08 09:19:49 MarkDuplicates Tracking 491741 as yet unmatched pairs. 60134 records in RAM.
INFO 2026-06-08 09:19:51 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:16,331,399
INFO 2026-06-08 09:19:51 MarkDuplicates Tracking 489946 as yet unmatched pairs. 58338 records in RAM.
INFO 2026-06-08 09:19:52 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:18,395,259
INFO 2026-06-08 09:19:52 MarkDuplicates Tracking 488391 as yet unmatched pairs. 56783 records in RAM.
INFO 2026-06-08 09:19:54 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:19,714,434
INFO 2026-06-08 09:19:54 MarkDuplicates Tracking 485881 as yet unmatched pairs. 54269 records in RAM.
INFO 2026-06-08 09:19:55 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,554
INFO 2026-06-08 09:19:55 MarkDuplicates Tracking 485689 as yet unmatched pairs. 54070 records in RAM.
INFO 2026-06-08 09:19:57 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,513
INFO 2026-06-08 09:19:57 MarkDuplicates Tracking 483788 as yet unmatched pairs. 52165 records in RAM.
INFO 2026-06-08 09:19:58 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:28,380,101
INFO 2026-06-08 09:19:58 MarkDuplicates Tracking 482125 as yet unmatched pairs. 50501 records in RAM.
INFO 2026-06-08 09:20:00 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:28,983,895
INFO 2026-06-08 09:20:00 MarkDuplicates Tracking 479306 as yet unmatched pairs. 47673 records in RAM.
INFO 2026-06-08 09:20:02 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:29,806,878
INFO 2026-06-08 09:20:02 MarkDuplicates Tracking 478139 as yet unmatched pairs. 46494 records in RAM.
INFO 2026-06-08 09:20:03 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:30,068,858
INFO 2026-06-08 09:20:03 MarkDuplicates Tracking 477934 as yet unmatched pairs. 46279 records in RAM.
INFO 2026-06-08 09:20:05 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:30,231,394
INFO 2026-06-08 09:20:05 MarkDuplicates Tracking 472121 as yet unmatched pairs. 40466 records in RAM.
INFO 2026-06-08 09:20:06 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:30,763,125
INFO 2026-06-08 09:20:06 MarkDuplicates Tracking 469696 as yet unmatched pairs. 38039 records in RAM.
INFO 2026-06-08 09:20:08 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:31,190,742
INFO 2026-06-08 09:20:08 MarkDuplicates Tracking 468103 as yet unmatched pairs. 36446 records in RAM.
INFO 2026-06-08 09:20:09 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:50,325,822
INFO 2026-06-08 09:20:09 MarkDuplicates Tracking 464219 as yet unmatched pairs. 32557 records in RAM.
INFO 2026-06-08 09:20:11 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:56,666,766
INFO 2026-06-08 09:20:11 MarkDuplicates Tracking 461649 as yet unmatched pairs. 29981 records in RAM.
INFO 2026-06-08 09:20:13 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:58,115,408
INFO 2026-06-08 09:20:13 MarkDuplicates Tracking 458919 as yet unmatched pairs. 27246 records in RAM.
INFO 2026-06-08 09:20:15 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:66,941,527
INFO 2026-06-08 09:20:15 MarkDuplicates Tracking 458021 as yet unmatched pairs. 26346 records in RAM.
INFO 2026-06-08 09:20:16 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:67,880,081
INFO 2026-06-08 09:20:16 MarkDuplicates Tracking 453692 as yet unmatched pairs. 22012 records in RAM.
INFO 2026-06-08 09:20:18 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:69,331,028
INFO 2026-06-08 09:20:18 MarkDuplicates Tracking 450251 as yet unmatched pairs. 18564 records in RAM.
INFO 2026-06-08 09:20:20 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:70,571,705
INFO 2026-06-08 09:20:20 MarkDuplicates Tracking 448393 as yet unmatched pairs. 16698 records in RAM.
INFO 2026-06-08 09:20:22 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:75,229,682
INFO 2026-06-08 09:20:22 MarkDuplicates Tracking 446115 as yet unmatched pairs. 14419 records in RAM.
INFO 2026-06-08 09:20:23 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:84,590,229
INFO 2026-06-08 09:20:23 MarkDuplicates Tracking 442961 as yet unmatched pairs. 11261 records in RAM.
INFO 2026-06-08 09:20:25 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:88,436,177
INFO 2026-06-08 09:20:25 MarkDuplicates Tracking 439474 as yet unmatched pairs. 7769 records in RAM.
INFO 2026-06-08 09:20:27 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr16:88,742,316
INFO 2026-06-08 09:20:27 MarkDuplicates Tracking 437560 as yet unmatched pairs. 5854 records in RAM.
INFO 2026-06-08 09:20:28 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:89,828,661
INFO 2026-06-08 09:20:28 MarkDuplicates Tracking 433672 as yet unmatched pairs. 1963 records in RAM.
INFO 2026-06-08 09:20:31 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 2s. Last read position: chr17:1,468,045
INFO 2026-06-08 09:20:31 MarkDuplicates Tracking 431351 as yet unmatched pairs. 149840 records in RAM.
INFO 2026-06-08 09:20:33 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr17:2,666,047
INFO 2026-06-08 09:20:33 MarkDuplicates Tracking 427276 as yet unmatched pairs. 145765 records in RAM.
INFO 2026-06-08 09:20:35 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:4,943,461
INFO 2026-06-08 09:20:35 MarkDuplicates Tracking 424807 as yet unmatched pairs. 143282 records in RAM.
INFO 2026-06-08 09:20:36 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:7,240,875
INFO 2026-06-08 09:20:36 MarkDuplicates Tracking 423961 as yet unmatched pairs. 142428 records in RAM.
INFO 2026-06-08 09:20:38 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:7,571,397
INFO 2026-06-08 09:20:38 MarkDuplicates Tracking 418919 as yet unmatched pairs. 137384 records in RAM.
INFO 2026-06-08 09:20:39 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:10,452,262
INFO 2026-06-08 09:20:39 MarkDuplicates Tracking 416247 as yet unmatched pairs. 134708 records in RAM.
INFO 2026-06-08 09:20:41 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,446
INFO 2026-06-08 09:20:41 MarkDuplicates Tracking 415722 as yet unmatched pairs. 134180 records in RAM.
INFO 2026-06-08 09:20:42 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:18,798,902
INFO 2026-06-08 09:20:42 MarkDuplicates Tracking 411711 as yet unmatched pairs. 130161 records in RAM.
INFO 2026-06-08 09:20:44 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:28,700,456
INFO 2026-06-08 09:20:44 MarkDuplicates Tracking 408232 as yet unmatched pairs. 126681 records in RAM.
INFO 2026-06-08 09:20:46 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:31,530,386
INFO 2026-06-08 09:20:46 MarkDuplicates Tracking 405653 as yet unmatched pairs. 124100 records in RAM.
INFO 2026-06-08 09:20:47 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr17:36,953,852
INFO 2026-06-08 09:20:47 MarkDuplicates Tracking 403486 as yet unmatched pairs. 121931 records in RAM.
INFO 2026-06-08 09:20:49 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:39,203,041
INFO 2026-06-08 09:20:49 MarkDuplicates Tracking 402872 as yet unmatched pairs. 121300 records in RAM.
INFO 2026-06-08 09:20:50 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:39,726,840
INFO 2026-06-08 09:20:50 MarkDuplicates Tracking 400582 as yet unmatched pairs. 119008 records in RAM.
INFO 2026-06-08 09:20:53 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 2s. Last read position: chr17:40,880,622
INFO 2026-06-08 09:20:53 MarkDuplicates Tracking 395649 as yet unmatched pairs. 114075 records in RAM.
INFO 2026-06-08 09:20:54 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:42,218,784
INFO 2026-06-08 09:20:54 MarkDuplicates Tracking 392775 as yet unmatched pairs. 111194 records in RAM.
INFO 2026-06-08 09:20:56 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:43,175,833
INFO 2026-06-08 09:20:56 MarkDuplicates Tracking 390231 as yet unmatched pairs. 108650 records in RAM.
INFO 2026-06-08 09:20:57 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr17:44,928,959
INFO 2026-06-08 09:20:57 MarkDuplicates Tracking 386776 as yet unmatched pairs. 105194 records in RAM.
INFO 2026-06-08 09:20:59 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:47,682,403
INFO 2026-06-08 09:20:59 MarkDuplicates Tracking 384707 as yet unmatched pairs. 103122 records in RAM.
INFO 2026-06-08 09:21:01 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,420
INFO 2026-06-08 09:21:01 MarkDuplicates Tracking 386591 as yet unmatched pairs. 104994 records in RAM.
INFO 2026-06-08 09:21:03 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,336
INFO 2026-06-08 09:21:03 MarkDuplicates Tracking 403818 as yet unmatched pairs. 122218 records in RAM.
INFO 2026-06-08 09:21:05 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,911
INFO 2026-06-08 09:21:05 MarkDuplicates Tracking 414897 as yet unmatched pairs. 133294 records in RAM.
INFO 2026-06-08 09:22:02 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 57s. Last read position: chr17:50,187,505
INFO 2026-06-08 09:22:02 MarkDuplicates Tracking 459388 as yet unmatched pairs. 177785 records in RAM.
INFO 2026-06-08 09:23:11 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 69s. Last read position: chr17:50,187,975
INFO 2026-06-08 09:23:11 MarkDuplicates Tracking 503210 as yet unmatched pairs. 221602 records in RAM.
INFO 2026-06-08 09:23:13 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,610
INFO 2026-06-08 09:23:13 MarkDuplicates Tracking 447911 as yet unmatched pairs. 166299 records in RAM.
INFO 2026-06-08 09:23:15 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,968
INFO 2026-06-08 09:23:15 MarkDuplicates Tracking 457284 as yet unmatched pairs. 175672 records in RAM.
INFO 2026-06-08 09:23:16 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,426
INFO 2026-06-08 09:23:16 MarkDuplicates Tracking 452849 as yet unmatched pairs. 171229 records in RAM.
INFO 2026-06-08 09:23:18 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,713
INFO 2026-06-08 09:23:18 MarkDuplicates Tracking 467194 as yet unmatched pairs. 185573 records in RAM.
INFO 2026-06-08 09:23:20 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,065
INFO 2026-06-08 09:23:20 MarkDuplicates Tracking 468051 as yet unmatched pairs. 186429 records in RAM.
INFO 2026-06-08 09:23:22 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,828
INFO 2026-06-08 09:23:22 MarkDuplicates Tracking 386980 as yet unmatched pairs. 105351 records in RAM.
INFO 2026-06-08 09:23:24 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,790
INFO 2026-06-08 09:23:24 MarkDuplicates Tracking 418866 as yet unmatched pairs. 137235 records in RAM.
INFO 2026-06-08 09:23:26 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,495
INFO 2026-06-08 09:23:26 MarkDuplicates Tracking 437205 as yet unmatched pairs. 155570 records in RAM.
INFO 2026-06-08 09:23:28 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,835
INFO 2026-06-08 09:23:28 MarkDuplicates Tracking 443022 as yet unmatched pairs. 161387 records in RAM.
INFO 2026-06-08 09:23:29 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,988
INFO 2026-06-08 09:23:29 MarkDuplicates Tracking 455037 as yet unmatched pairs. 173384 records in RAM.
INFO 2026-06-08 09:23:31 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,368
INFO 2026-06-08 09:23:31 MarkDuplicates Tracking 434815 as yet unmatched pairs. 153158 records in RAM.
INFO 2026-06-08 09:23:33 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,724
INFO 2026-06-08 09:23:33 MarkDuplicates Tracking 414168 as yet unmatched pairs. 132508 records in RAM.
INFO 2026-06-08 09:23:34 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,246
INFO 2026-06-08 09:23:34 MarkDuplicates Tracking 427870 as yet unmatched pairs. 146196 records in RAM.
INFO 2026-06-08 09:23:36 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,593
INFO 2026-06-08 09:23:36 MarkDuplicates Tracking 442150 as yet unmatched pairs. 160469 records in RAM.
INFO 2026-06-08 09:23:38 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,158
INFO 2026-06-08 09:23:38 MarkDuplicates Tracking 448065 as yet unmatched pairs. 166384 records in RAM.
INFO 2026-06-08 09:23:40 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,500
INFO 2026-06-08 09:23:40 MarkDuplicates Tracking 415201 as yet unmatched pairs. 133515 records in RAM.
INFO 2026-06-08 09:23:43 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,193
INFO 2026-06-08 09:23:43 MarkDuplicates Tracking 437756 as yet unmatched pairs. 156070 records in RAM.
INFO 2026-06-08 09:23:45 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 2s. Last read position: chr17:50,198,160
INFO 2026-06-08 09:23:45 MarkDuplicates Tracking 366768 as yet unmatched pairs. 85081 records in RAM.
INFO 2026-06-08 09:23:46 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,273
INFO 2026-06-08 09:23:46 MarkDuplicates Tracking 393117 as yet unmatched pairs. 111427 records in RAM.
INFO 2026-06-08 09:23:48 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,828
INFO 2026-06-08 09:23:48 MarkDuplicates Tracking 345842 as yet unmatched pairs. 64146 records in RAM.
INFO 2026-06-08 09:23:49 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:51,168,278
INFO 2026-06-08 09:23:49 MarkDuplicates Tracking 313075 as yet unmatched pairs. 31379 records in RAM.
INFO 2026-06-08 09:23:51 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:59,664,831
INFO 2026-06-08 09:23:51 MarkDuplicates Tracking 312351 as yet unmatched pairs. 30653 records in RAM.
INFO 2026-06-08 09:23:53 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:62,681,880
INFO 2026-06-08 09:23:53 MarkDuplicates Tracking 305012 as yet unmatched pairs. 23311 records in RAM.
INFO 2026-06-08 09:23:54 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr17:67,195,434
INFO 2026-06-08 09:23:54 MarkDuplicates Tracking 302287 as yet unmatched pairs. 20577 records in RAM.
INFO 2026-06-08 09:23:56 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:74,866,867
INFO 2026-06-08 09:23:56 MarkDuplicates Tracking 299806 as yet unmatched pairs. 18094 records in RAM.
INFO 2026-06-08 09:23:57 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:75,778,649
INFO 2026-06-08 09:23:57 MarkDuplicates Tracking 301495 as yet unmatched pairs. 19782 records in RAM.
INFO 2026-06-08 09:23:59 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:77,402,412
INFO 2026-06-08 09:23:59 MarkDuplicates Tracking 294864 as yet unmatched pairs. 13149 records in RAM.
INFO 2026-06-08 09:24:00 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr17:79,834,598
INFO 2026-06-08 09:24:00 MarkDuplicates Tracking 290901 as yet unmatched pairs. 9182 records in RAM.
INFO 2026-06-08 09:24:02 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,254
INFO 2026-06-08 09:24:02 MarkDuplicates Tracking 290621 as yet unmatched pairs. 8902 records in RAM.
INFO 2026-06-08 09:24:04 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr17:81,977,672
INFO 2026-06-08 09:24:04 MarkDuplicates Tracking 285554 as yet unmatched pairs. 3811 records in RAM.
INFO 2026-06-08 09:24:06 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 2s. Last read position: chr17:83,084,984
INFO 2026-06-08 09:24:06 MarkDuplicates Tracking 282127 as yet unmatched pairs. 378 records in RAM.
INFO 2026-06-08 09:24:09 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 2s. Last read position: chr18:12,211,754
INFO 2026-06-08 09:24:09 MarkDuplicates Tracking 279408 as yet unmatched pairs. 9912 records in RAM.
INFO 2026-06-08 09:24:11 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr18:31,522,239
INFO 2026-06-08 09:24:11 MarkDuplicates Tracking 278024 as yet unmatched pairs. 8524 records in RAM.
INFO 2026-06-08 09:24:12 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr18:49,490,857
INFO 2026-06-08 09:24:12 MarkDuplicates Tracking 277999 as yet unmatched pairs. 8496 records in RAM.
INFO 2026-06-08 09:24:13 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr18:62,268,930
INFO 2026-06-08 09:24:13 MarkDuplicates Tracking 272418 as yet unmatched pairs. 2915 records in RAM.
INFO 2026-06-08 09:24:16 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 2s. Last read position: chr19:581,379
INFO 2026-06-08 09:24:16 MarkDuplicates Tracking 270974 as yet unmatched pairs. 124538 records in RAM.
INFO 2026-06-08 09:24:18 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr19:1,079,708
INFO 2026-06-08 09:24:18 MarkDuplicates Tracking 265691 as yet unmatched pairs. 119253 records in RAM.
INFO 2026-06-08 09:24:19 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:1,440,119
INFO 2026-06-08 09:24:19 MarkDuplicates Tracking 265218 as yet unmatched pairs. 118776 records in RAM.
INFO 2026-06-08 09:24:21 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:2,273,003
INFO 2026-06-08 09:24:21 MarkDuplicates Tracking 259613 as yet unmatched pairs. 113171 records in RAM.
INFO 2026-06-08 09:24:22 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:4,054,743
INFO 2026-06-08 09:24:22 MarkDuplicates Tracking 257142 as yet unmatched pairs. 110699 records in RAM.
INFO 2026-06-08 09:24:24 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:5,661,560
INFO 2026-06-08 09:24:24 MarkDuplicates Tracking 253228 as yet unmatched pairs. 106780 records in RAM.
INFO 2026-06-08 09:24:26 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:6,702,483
INFO 2026-06-08 09:24:26 MarkDuplicates Tracking 251079 as yet unmatched pairs. 104629 records in RAM.
INFO 2026-06-08 09:24:27 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:8,302,465
INFO 2026-06-08 09:24:27 MarkDuplicates Tracking 248579 as yet unmatched pairs. 102126 records in RAM.
INFO 2026-06-08 09:24:28 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:10,321,120
INFO 2026-06-08 09:24:28 MarkDuplicates Tracking 244727 as yet unmatched pairs. 98271 records in RAM.
INFO 2026-06-08 09:24:30 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:11,128,036
INFO 2026-06-08 09:24:30 MarkDuplicates Tracking 241744 as yet unmatched pairs. 95285 records in RAM.
INFO 2026-06-08 09:24:32 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:12,745,475
INFO 2026-06-08 09:24:32 MarkDuplicates Tracking 238933 as yet unmatched pairs. 92472 records in RAM.
INFO 2026-06-08 09:24:34 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:13,932,953
INFO 2026-06-08 09:24:34 MarkDuplicates Tracking 235729 as yet unmatched pairs. 89266 records in RAM.
INFO 2026-06-08 09:24:36 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr19:14,621,925
INFO 2026-06-08 09:24:36 MarkDuplicates Tracking 232974 as yet unmatched pairs. 86510 records in RAM.
INFO 2026-06-08 09:24:38 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:15,380,076
INFO 2026-06-08 09:24:38 MarkDuplicates Tracking 229969 as yet unmatched pairs. 83504 records in RAM.
INFO 2026-06-08 09:24:40 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:17,423,561
INFO 2026-06-08 09:24:40 MarkDuplicates Tracking 226667 as yet unmatched pairs. 80196 records in RAM.
INFO 2026-06-08 09:24:41 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:18,538,253
INFO 2026-06-08 09:24:41 MarkDuplicates Tracking 224533 as yet unmatched pairs. 78059 records in RAM.
INFO 2026-06-08 09:24:43 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:19,527,280
INFO 2026-06-08 09:24:43 MarkDuplicates Tracking 221606 as yet unmatched pairs. 75132 records in RAM.
INFO 2026-06-08 09:24:44 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr19:34,365,322
INFO 2026-06-08 09:24:44 MarkDuplicates Tracking 219687 as yet unmatched pairs. 73207 records in RAM.
INFO 2026-06-08 09:24:46 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:35,259,027
INFO 2026-06-08 09:24:46 MarkDuplicates Tracking 216677 as yet unmatched pairs. 70182 records in RAM.
INFO 2026-06-08 09:24:48 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:36,141,164
INFO 2026-06-08 09:24:48 MarkDuplicates Tracking 211962 as yet unmatched pairs. 65464 records in RAM.
INFO 2026-06-08 09:24:49 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:38,512,088
INFO 2026-06-08 09:24:49 MarkDuplicates Tracking 209066 as yet unmatched pairs. 62568 records in RAM.
INFO 2026-06-08 09:24:51 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:38,817,118
INFO 2026-06-08 09:24:51 MarkDuplicates Tracking 208688 as yet unmatched pairs. 62180 records in RAM.
INFO 2026-06-08 09:24:52 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:39,435,620
INFO 2026-06-08 09:24:52 MarkDuplicates Tracking 209883 as yet unmatched pairs. 63372 records in RAM.
INFO 2026-06-08 09:24:54 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:40,378,120
INFO 2026-06-08 09:24:54 MarkDuplicates Tracking 201491 as yet unmatched pairs. 54979 records in RAM.
INFO 2026-06-08 09:24:55 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:41,331,082
INFO 2026-06-08 09:24:55 MarkDuplicates Tracking 198502 as yet unmatched pairs. 51989 records in RAM.
INFO 2026-06-08 09:24:57 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:41,709,972
INFO 2026-06-08 09:24:57 MarkDuplicates Tracking 206600 as yet unmatched pairs. 60084 records in RAM.
INFO 2026-06-08 09:24:58 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:41,717,627
INFO 2026-06-08 09:24:58 MarkDuplicates Tracking 223054 as yet unmatched pairs. 76538 records in RAM.
INFO 2026-06-08 09:25:00 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:41,721,119
INFO 2026-06-08 09:25:00 MarkDuplicates Tracking 204538 as yet unmatched pairs. 58022 records in RAM.
INFO 2026-06-08 09:25:03 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 2s. Last read position: chr19:41,907,222
INFO 2026-06-08 09:25:03 MarkDuplicates Tracking 190472 as yet unmatched pairs. 43952 records in RAM.
INFO 2026-06-08 09:25:05 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:42,292,841
INFO 2026-06-08 09:25:05 MarkDuplicates Tracking 189064 as yet unmatched pairs. 42544 records in RAM.
INFO 2026-06-08 09:25:06 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:43,780,685
INFO 2026-06-08 09:25:06 MarkDuplicates Tracking 183529 as yet unmatched pairs. 36987 records in RAM.
INFO 2026-06-08 09:25:08 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:45,382,563
INFO 2026-06-08 09:25:08 MarkDuplicates Tracking 180293 as yet unmatched pairs. 33748 records in RAM.
INFO 2026-06-08 09:25:09 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:46,387,221
INFO 2026-06-08 09:25:09 MarkDuplicates Tracking 177315 as yet unmatched pairs. 30767 records in RAM.
INFO 2026-06-08 09:25:11 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:47,701,345
INFO 2026-06-08 09:25:11 MarkDuplicates Tracking 173781 as yet unmatched pairs. 27231 records in RAM.
INFO 2026-06-08 09:25:13 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:48,626,048
INFO 2026-06-08 09:25:13 MarkDuplicates Tracking 171320 as yet unmatched pairs. 24769 records in RAM.
INFO 2026-06-08 09:25:14 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:49,210,340
INFO 2026-06-08 09:25:14 MarkDuplicates Tracking 168676 as yet unmatched pairs. 22125 records in RAM.
INFO 2026-06-08 09:25:15 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:49,616,000
INFO 2026-06-08 09:25:15 MarkDuplicates Tracking 164985 as yet unmatched pairs. 18434 records in RAM.
INFO 2026-06-08 09:25:17 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:50,210,436
INFO 2026-06-08 09:25:17 MarkDuplicates Tracking 162591 as yet unmatched pairs. 16040 records in RAM.
INFO 2026-06-08 09:25:19 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:51,484,994
INFO 2026-06-08 09:25:19 MarkDuplicates Tracking 158351 as yet unmatched pairs. 11799 records in RAM.
INFO 2026-06-08 09:25:20 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:54,188,480
INFO 2026-06-08 09:25:20 MarkDuplicates Tracking 156133 as yet unmatched pairs. 9581 records in RAM.
INFO 2026-06-08 09:25:22 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:55,386,387
INFO 2026-06-08 09:25:22 MarkDuplicates Tracking 155642 as yet unmatched pairs. 9088 records in RAM.
INFO 2026-06-08 09:25:23 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:57,233,492
INFO 2026-06-08 09:25:23 MarkDuplicates Tracking 149407 as yet unmatched pairs. 2853 records in RAM.
INFO 2026-06-08 09:25:25 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr20:297,910
INFO 2026-06-08 09:25:25 MarkDuplicates Tracking 146563 as yet unmatched pairs. 45789 records in RAM.
INFO 2026-06-08 09:25:27 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 2s. Last read position: chr20:3,866,023
INFO 2026-06-08 09:25:27 MarkDuplicates Tracking 144103 as yet unmatched pairs. 43327 records in RAM.
INFO 2026-06-08 09:25:29 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr20:17,659,617
INFO 2026-06-08 09:25:29 MarkDuplicates Tracking 141101 as yet unmatched pairs. 40325 records in RAM.
INFO 2026-06-08 09:25:31 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:25,282,061
INFO 2026-06-08 09:25:31 MarkDuplicates Tracking 139479 as yet unmatched pairs. 38700 records in RAM.
INFO 2026-06-08 09:25:32 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr20:32,825,968
INFO 2026-06-08 09:25:32 MarkDuplicates Tracking 136921 as yet unmatched pairs. 36141 records in RAM.
INFO 2026-06-08 09:25:34 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr20:35,147,151
INFO 2026-06-08 09:25:34 MarkDuplicates Tracking 133020 as yet unmatched pairs. 32235 records in RAM.
INFO 2026-06-08 09:25:35 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr20:36,525,880
INFO 2026-06-08 09:25:35 MarkDuplicates Tracking 130588 as yet unmatched pairs. 29803 records in RAM.
INFO 2026-06-08 09:25:37 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:38,539,951
INFO 2026-06-08 09:25:37 MarkDuplicates Tracking 127703 as yet unmatched pairs. 26918 records in RAM.
INFO 2026-06-08 09:25:38 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr20:44,901,669
INFO 2026-06-08 09:25:38 MarkDuplicates Tracking 125287 as yet unmatched pairs. 24496 records in RAM.
INFO 2026-06-08 09:25:40 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr20:45,848,660
INFO 2026-06-08 09:25:40 MarkDuplicates Tracking 122294 as yet unmatched pairs. 21500 records in RAM.
INFO 2026-06-08 09:25:42 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr20:48,657,039
INFO 2026-06-08 09:25:42 MarkDuplicates Tracking 119714 as yet unmatched pairs. 18913 records in RAM.
INFO 2026-06-08 09:25:43 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr20:50,893,980
INFO 2026-06-08 09:25:43 MarkDuplicates Tracking 117043 as yet unmatched pairs. 16239 records in RAM.
INFO 2026-06-08 09:25:45 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr20:57,652,569
INFO 2026-06-08 09:25:45 MarkDuplicates Tracking 119026 as yet unmatched pairs. 18222 records in RAM.
INFO 2026-06-08 09:25:46 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr20:62,136,937
INFO 2026-06-08 09:25:46 MarkDuplicates Tracking 112784 as yet unmatched pairs. 11980 records in RAM.
INFO 2026-06-08 09:25:48 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr20:62,351,909
INFO 2026-06-08 09:25:48 MarkDuplicates Tracking 108858 as yet unmatched pairs. 8054 records in RAM.
INFO 2026-06-08 09:25:49 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr20:63,521,579
INFO 2026-06-08 09:25:49 MarkDuplicates Tracking 112980 as yet unmatched pairs. 12176 records in RAM.
INFO 2026-06-08 09:25:51 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr20:63,945,677
INFO 2026-06-08 09:25:51 MarkDuplicates Tracking 101570 as yet unmatched pairs. 765 records in RAM.
INFO 2026-06-08 09:25:53 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,068
INFO 2026-06-08 09:25:53 MarkDuplicates Tracking 100586 as yet unmatched pairs. 18703 records in RAM.
INFO 2026-06-08 09:25:54 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr21:25,976,003
INFO 2026-06-08 09:25:54 MarkDuplicates Tracking 99319 as yet unmatched pairs. 17434 records in RAM.
INFO 2026-06-08 09:25:56 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 2s. Last read position: chr21:33,555,253
INFO 2026-06-08 09:25:56 MarkDuplicates Tracking 95850 as yet unmatched pairs. 13964 records in RAM.
INFO 2026-06-08 09:25:58 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr21:38,818,504
INFO 2026-06-08 09:25:58 MarkDuplicates Tracking 94909 as yet unmatched pairs. 13019 records in RAM.
INFO 2026-06-08 09:25:59 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr21:43,687,795
INFO 2026-06-08 09:25:59 MarkDuplicates Tracking 90059 as yet unmatched pairs. 8167 records in RAM.
INFO 2026-06-08 09:26:01 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr21:45,494,877
INFO 2026-06-08 09:26:01 MarkDuplicates Tracking 87687 as yet unmatched pairs. 5795 records in RAM.
INFO 2026-06-08 09:26:02 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr21:46,122,115
INFO 2026-06-08 09:26:02 MarkDuplicates Tracking 85759 as yet unmatched pairs. 3867 records in RAM.
INFO 2026-06-08 09:26:04 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr22:19,435,740
INFO 2026-06-08 09:26:04 MarkDuplicates Tracking 80650 as yet unmatched pairs. 31748 records in RAM.
INFO 2026-06-08 09:26:06 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr22:23,181,712
INFO 2026-06-08 09:26:06 MarkDuplicates Tracking 79269 as yet unmatched pairs. 30367 records in RAM.
INFO 2026-06-08 09:26:08 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr22:24,542,937
INFO 2026-06-08 09:26:08 MarkDuplicates Tracking 74314 as yet unmatched pairs. 25412 records in RAM.
INFO 2026-06-08 09:26:10 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 2s. Last read position: chr22:29,342,324
INFO 2026-06-08 09:26:10 MarkDuplicates Tracking 71342 as yet unmatched pairs. 22440 records in RAM.
INFO 2026-06-08 09:26:12 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr22:32,479,185
INFO 2026-06-08 09:26:12 MarkDuplicates Tracking 69137 as yet unmatched pairs. 20235 records in RAM.
INFO 2026-06-08 09:26:14 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr22:36,309,282
INFO 2026-06-08 09:26:14 MarkDuplicates Tracking 67555 as yet unmatched pairs. 18653 records in RAM.
INFO 2026-06-08 09:26:15 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr22:37,806,148
INFO 2026-06-08 09:26:15 MarkDuplicates Tracking 63810 as yet unmatched pairs. 14908 records in RAM.
INFO 2026-06-08 09:26:17 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr22:39,521,600
INFO 2026-06-08 09:26:17 MarkDuplicates Tracking 63222 as yet unmatched pairs. 14320 records in RAM.
INFO 2026-06-08 09:26:19 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr22:41,877,410
INFO 2026-06-08 09:26:19 MarkDuplicates Tracking 58204 as yet unmatched pairs. 9302 records in RAM.
INFO 2026-06-08 09:26:20 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr22:45,700,285
INFO 2026-06-08 09:26:20 MarkDuplicates Tracking 54893 as yet unmatched pairs. 5990 records in RAM.
INFO 2026-06-08 09:26:22 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr22:50,438,179
INFO 2026-06-08 09:26:22 MarkDuplicates Tracking 51552 as yet unmatched pairs. 2649 records in RAM.
INFO 2026-06-08 09:26:24 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chrX:2,490,181
INFO 2026-06-08 09:26:24 MarkDuplicates Tracking 48146 as yet unmatched pairs. 43867 records in RAM.
INFO 2026-06-08 09:26:25 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chrX:12,976,280
INFO 2026-06-08 09:26:25 MarkDuplicates Tracking 54596 as yet unmatched pairs. 50317 records in RAM.
INFO 2026-06-08 09:26:27 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chrX:24,073,209
INFO 2026-06-08 09:26:27 MarkDuplicates Tracking 44018 as yet unmatched pairs. 39735 records in RAM.
INFO 2026-06-08 09:26:29 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chrX:41,229,625
INFO 2026-06-08 09:26:29 MarkDuplicates Tracking 41819 as yet unmatched pairs. 37536 records in RAM.
INFO 2026-06-08 09:26:30 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chrX:47,565,050
INFO 2026-06-08 09:26:30 MarkDuplicates Tracking 38759 as yet unmatched pairs. 34476 records in RAM.
INFO 2026-06-08 09:26:31 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chrX:49,038,318
INFO 2026-06-08 09:26:31 MarkDuplicates Tracking 36421 as yet unmatched pairs. 32138 records in RAM.
INFO 2026-06-08 09:26:33 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chrX:53,546,763
INFO 2026-06-08 09:26:33 MarkDuplicates Tracking 33022 as yet unmatched pairs. 28739 records in RAM.
INFO 2026-06-08 09:26:35 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chrX:65,956,298
INFO 2026-06-08 09:26:35 MarkDuplicates Tracking 29994 as yet unmatched pairs. 25711 records in RAM.
INFO 2026-06-08 09:26:36 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:71,300,100
INFO 2026-06-08 09:26:36 MarkDuplicates Tracking 28103 as yet unmatched pairs. 23820 records in RAM.
INFO 2026-06-08 09:26:38 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chrX:77,717,136
INFO 2026-06-08 09:26:38 MarkDuplicates Tracking 26266 as yet unmatched pairs. 21983 records in RAM.
INFO 2026-06-08 09:26:39 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chrX:101,625,115
INFO 2026-06-08 09:26:39 MarkDuplicates Tracking 23316 as yet unmatched pairs. 19033 records in RAM.
INFO 2026-06-08 09:26:41 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chrX:119,236,417
INFO 2026-06-08 09:26:41 MarkDuplicates Tracking 22954 as yet unmatched pairs. 18671 records in RAM.
INFO 2026-06-08 09:26:43 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chrX:130,014,711
INFO 2026-06-08 09:26:43 MarkDuplicates Tracking 18439 as yet unmatched pairs. 14155 records in RAM.
INFO 2026-06-08 09:26:44 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chrX:150,816,040
INFO 2026-06-08 09:26:44 MarkDuplicates Tracking 15894 as yet unmatched pairs. 11610 records in RAM.
INFO 2026-06-08 09:26:46 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 2s. Last read position: chrX:153,951,365
INFO 2026-06-08 09:26:46 MarkDuplicates Tracking 13357 as yet unmatched pairs. 9073 records in RAM.
INFO 2026-06-08 09:26:48 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 2s. Last read position: chrX:154,354,824
INFO 2026-06-08 09:26:48 MarkDuplicates Tracking 11587 as yet unmatched pairs. 7301 records in RAM.
INFO 2026-06-08 09:26:50 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chrX:154,368,025
INFO 2026-06-08 09:26:50 MarkDuplicates Tracking 10794 as yet unmatched pairs. 6508 records in RAM.
INFO 2026-06-08 09:26:52 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chrX:155,227,263
INFO 2026-06-08 09:26:52 MarkDuplicates Tracking 4745 as yet unmatched pairs. 459 records in RAM.
INFO 2026-06-08 09:26:53 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,446
INFO 2026-06-08 09:26:53 MarkDuplicates Tracking 1887 as yet unmatched pairs. 75 records in RAM.
INFO 2026-06-08 09:26:55 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,567
INFO 2026-06-08 09:26:55 MarkDuplicates Tracking 34 as yet unmatched pairs. 7 records in RAM.
INFO 2026-06-08 09:26:55 MarkDuplicates Read 634191460 records. 0 pairs never matched.
INFO 2026-06-08 09:27:43 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141960; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:27:43 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:27:47 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:27:47 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:28:01 OpticalDuplicateFinder Large duplicate set. size = 1100
INFO 2026-06-08 09:28:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,479
INFO 2026-06-08 09:28:15 OpticalDuplicateFinder Large duplicate set. size = 1293
INFO 2026-06-08 09:28:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,058
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,288
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder Large duplicate set. size = 1038
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,562
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,452
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder Large duplicate set. size = 1015
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,624
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder Large duplicate set. size = 1129
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,595
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder Large duplicate set. size = 1108
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,282
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder Large duplicate set. size = 1589
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,361
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,041
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder Large duplicate set. size = 1713
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,370
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder Large duplicate set. size = 1119
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,742
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder Large duplicate set. size = 1425
INFO 2026-06-08 09:28:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,958
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder Large duplicate set. size = 1135
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,724
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder Large duplicate set. size = 1168
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,534
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder Large duplicate set. size = 1503
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,831
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,163
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder Large duplicate set. size = 1706
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,875
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,241
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,724
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder Large duplicate set. size = 1488
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,634
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder Large duplicate set. size = 1134
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,082
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 09:28:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,635
INFO 2026-06-08 09:28:42 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 09:28:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,740
INFO 2026-06-08 09:28:57 OpticalDuplicateFinder Large duplicate set. size = 1283
INFO 2026-06-08 09:28:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,092
INFO 2026-06-08 09:28:57 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:28:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,476
INFO 2026-06-08 09:28:57 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 09:28:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,664
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder Large duplicate set. size = 1254
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,785
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,435
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder Large duplicate set. size = 1500
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,050
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder Large duplicate set. size = 1844
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,349
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder Large duplicate set. size = 1329
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,900
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder Large duplicate set. size = 1205
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,586
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder Large duplicate set. size = 1574
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,310
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,594
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder Large duplicate set. size = 1276
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,285
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,736
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder Large duplicate set. size = 1364
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,754
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder Large duplicate set. size = 1266
INFO 2026-06-08 09:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,175
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder Large duplicate set. size = 1289
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,544
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder Large duplicate set. size = 1131
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,703
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,625
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,621
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder Large duplicate set. size = 1198
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,096
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder Large duplicate set. size = 1595
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,607
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder Large duplicate set. size = 1695
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,812
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,204
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder Large duplicate set. size = 2352
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,273
INFO 2026-06-08 09:28:59 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,939
INFO 2026-06-08 09:29:00 OpticalDuplicateFinder Large duplicate set. size = 1576
INFO 2026-06-08 09:29:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,295
INFO 2026-06-08 09:29:00 OpticalDuplicateFinder Large duplicate set. size = 1137
INFO 2026-06-08 09:29:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,011
INFO 2026-06-08 09:29:00 OpticalDuplicateFinder Large duplicate set. size = 2166
INFO 2026-06-08 09:29:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,241
INFO 2026-06-08 09:29:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,895
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder Large duplicate set. size = 1329
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,620
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder Large duplicate set. size = 1465
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,869
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder Large duplicate set. size = 2345
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,063
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,180
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder Large duplicate set. size = 1212
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,213
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder Large duplicate set. size = 1362
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,080
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder Large duplicate set. size = 1059
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,066
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder Large duplicate set. size = 1456
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,572
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder Large duplicate set. size = 1133
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,768
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder Large duplicate set. size = 1688
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,262
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder Large duplicate set. size = 1115
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,731
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder Large duplicate set. size = 1573
INFO 2026-06-08 09:29:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,870
INFO 2026-06-08 09:29:02 OpticalDuplicateFinder Large duplicate set. size = 1168
INFO 2026-06-08 09:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,249
INFO 2026-06-08 09:29:02 OpticalDuplicateFinder Large duplicate set. size = 1399
INFO 2026-06-08 09:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,173
INFO 2026-06-08 09:29:02 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 09:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,759
INFO 2026-06-08 09:29:02 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 09:29:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,912
INFO 2026-06-08 09:29:16 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:29:16 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:30:18 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:30:22 MarkDuplicates After generateDuplicateIndexes freeMemory: 203915640; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:30:22 MarkDuplicates Marking 343019489 records as duplicates.
INFO 2026-06-08 09:30:22 MarkDuplicates Found 15293815 optical duplicate clusters.
INFO 2026-06-08 09:30:22 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:30:39 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:22,091,531
INFO 2026-06-08 09:30:55 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 15s. Last read position: chr1:45,693,788
INFO 2026-06-08 09:31:11 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:48s. Time for last 10,000,000: 15s. Last read position: chr1:145,994,691
INFO 2026-06-08 09:31:26 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:04s. Time for last 10,000,000: 15s. Last read position: chr1:156,731,985
INFO 2026-06-08 09:31:42 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:20s. Time for last 10,000,000: 16s. Last read position: chr1:206,730,722
INFO 2026-06-08 09:31:58 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:36s. Time for last 10,000,000: 16s. Last read position: chr2:27,083,400
INFO 2026-06-08 09:32:14 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:51s. Time for last 10,000,000: 15s. Last read position: chr2:55,233,365
INFO 2026-06-08 09:32:30 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:07s. Time for last 10,000,000: 16s. Last read position: chr2:120,990,026
INFO 2026-06-08 09:32:46 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:23s. Time for last 10,000,000: 15s. Last read position: chr2:178,722,102
INFO 2026-06-08 09:33:02 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:39s. Time for last 10,000,000: 16s. Last read position: chr2:215,375,238
INFO 2026-06-08 09:33:17 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:55s. Time for last 10,000,000: 15s. Last read position: chr2:216,678,966
INFO 2026-06-08 09:33:33 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:10s. Time for last 10,000,000: 15s. Last read position: chr3:18,349,050
INFO 2026-06-08 09:33:49 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:26s. Time for last 10,000,000: 16s. Last read position: chr3:58,123,315
INFO 2026-06-08 09:34:05 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:42s. Time for last 10,000,000: 15s. Last read position: chr3:160,419,380
INFO 2026-06-08 09:34:21 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:58s. Time for last 10,000,000: 15s. Last read position: chr4:3,174,720
INFO 2026-06-08 09:34:37 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:14s. Time for last 10,000,000: 16s. Last read position: chr4:121,684,744
INFO 2026-06-08 09:34:53 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:30s. Time for last 10,000,000: 15s. Last read position: chr5:72,460,959
INFO 2026-06-08 09:35:09 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:46s. Time for last 10,000,000: 15s. Last read position: chr5:150,405,112
INFO 2026-06-08 09:35:25 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:02s. Time for last 10,000,000: 15s. Last read position: chr6:26,156,586
INFO 2026-06-08 09:35:40 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:18s. Time for last 10,000,000: 15s. Last read position: chr6:33,313,235
INFO 2026-06-08 09:35:56 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:33s. Time for last 10,000,000: 15s. Last read position: chr6:116,278,509
INFO 2026-06-08 09:36:12 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:49s. Time for last 10,000,000: 15s. Last read position: chr7:5,527,849
INFO 2026-06-08 09:36:27 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:05s. Time for last 10,000,000: 15s. Last read position: chr7:74,066,742
INFO 2026-06-08 09:36:43 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:20s. Time for last 10,000,000: 15s. Last read position: chr7:100,995,330
INFO 2026-06-08 09:36:58 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:35s. Time for last 10,000,000: 15s. Last read position: chr7:123,692,565
INFO 2026-06-08 09:37:14 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:51s. Time for last 10,000,000: 15s. Last read position: chr8:22,569,273
INFO 2026-06-08 09:37:30 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:07s. Time for last 10,000,000: 16s. Last read position: chr8:120,425,311
INFO 2026-06-08 09:37:45 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:23s. Time for last 10,000,000: 15s. Last read position: chr8:143,864,991
INFO 2026-06-08 09:38:01 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:38s. Time for last 10,000,000: 15s. Last read position: chr9:65,193,465
INFO 2026-06-08 09:38:17 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:54s. Time for last 10,000,000: 16s. Last read position: chr9:128,908,043
INFO 2026-06-08 09:38:33 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:10s. Time for last 10,000,000: 16s. Last read position: chr10:30,047,549
INFO 2026-06-08 09:38:49 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:26s. Time for last 10,000,000: 15s. Last read position: chr10:80,164,086
INFO 2026-06-08 09:39:05 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:42s. Time for last 10,000,000: 15s. Last read position: chr11:810,345
INFO 2026-06-08 09:39:21 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:58s. Time for last 10,000,000: 16s. Last read position: chr11:57,690,063
INFO 2026-06-08 09:39:37 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:14s. Time for last 10,000,000: 15s. Last read position: chr11:65,865,219
INFO 2026-06-08 09:39:52 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:29s. Time for last 10,000,000: 15s. Last read position: chr11:114,312,193
INFO 2026-06-08 09:40:08 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:45s. Time for last 10,000,000: 15s. Last read position: chr12:15,631,493
INFO 2026-06-08 09:40:23 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:01s. Time for last 10,000,000: 15s. Last read position: chr12:56,600,276
INFO 2026-06-08 09:40:39 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:16s. Time for last 10,000,000: 15s. Last read position: chr12:111,555,884
INFO 2026-06-08 09:40:55 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:32s. Time for last 10,000,000: 15s. Last read position: chr13:48,253,838
INFO 2026-06-08 09:41:10 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:47s. Time for last 10,000,000: 15s. Last read position: chr14:34,603,417
INFO 2026-06-08 09:41:26 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:03s. Time for last 10,000,000: 15s. Last read position: chr14:102,040,275
INFO 2026-06-08 09:41:42 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:19s. Time for last 10,000,000: 16s. Last read position: chr15:42,327,429
INFO 2026-06-08 09:41:58 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:35s. Time for last 10,000,000: 15s. Last read position: chr15:74,956,101
INFO 2026-06-08 09:42:14 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:51s. Time for last 10,000,000: 16s. Last read position: chr16:2,761,562
INFO 2026-06-08 09:42:31 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:08s. Time for last 10,000,000: 17s. Last read position: chr16:22,535,513
INFO 2026-06-08 09:42:49 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:27s. Time for last 10,000,000: 18s. Last read position: chr16:58,115,408
INFO 2026-06-08 09:43:05 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:42s. Time for last 10,000,000: 15s. Last read position: chr17:1,468,045
INFO 2026-06-08 09:43:21 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:58s. Time for last 10,000,000: 15s. Last read position: chr17:36,953,852
INFO 2026-06-08 09:43:39 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:16s. Time for last 10,000,000: 17s. Last read position: chr17:50,186,911
INFO 2026-06-08 09:43:55 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:32s. Time for last 10,000,000: 15s. Last read position: chr17:50,192,495
INFO 2026-06-08 09:44:12 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:49s. Time for last 10,000,000: 17s. Last read position: chr17:50,198,160
INFO 2026-06-08 09:44:29 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:07s. Time for last 10,000,000: 17s. Last read position: chr17:79,834,598
INFO 2026-06-08 09:44:47 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:25s. Time for last 10,000,000: 17s. Last read position: chr19:1,440,119
INFO 2026-06-08 09:45:03 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:40s. Time for last 10,000,000: 15s. Last read position: chr19:14,621,925
INFO 2026-06-08 09:45:19 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:56s. Time for last 10,000,000: 16s. Last read position: chr19:39,435,620
INFO 2026-06-08 09:45:35 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:12s. Time for last 10,000,000: 15s. Last read position: chr19:46,387,221
INFO 2026-06-08 09:45:51 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:28s. Time for last 10,000,000: 16s. Last read position: chr20:297,910
INFO 2026-06-08 09:46:07 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:44s. Time for last 10,000,000: 16s. Last read position: chr20:48,657,039
INFO 2026-06-08 09:46:24 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:01s. Time for last 10,000,000: 17s. Last read position: chr21:38,818,504
INFO 2026-06-08 09:46:41 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:18s. Time for last 10,000,000: 16s. Last read position: chr22:37,806,148
INFO 2026-06-08 09:46:57 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:35s. Time for last 10,000,000: 16s. Last read position: chrX:49,038,318
INFO 2026-06-08 09:47:13 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:50s. Time for last 10,000,000: 15s. Last read position: chrX:154,354,824
INFO 2026-06-08 09:47:29 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:47:29 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:47:29 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:47:29 MarkDuplicates Before output close freeMemory: 203890056; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:47:29 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:47:29 MarkDuplicates After output close freeMemory: 104127816; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:47:29 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 41.82 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory