#!/bin/bash -euo pipefail
# Extract VAF features from VCF
extract_vaf_features.py \
    "PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1.vcf" \
    --output "PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1.features.csv"

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES":
    python: $(python3 --version | sed 's/Python //g')
    extract_vaf_features: 1.0.0
END_VERSIONS