Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/184fb834bc8193db29cca1fd0a720b/659_bua-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/b73d6fda7de870c1f95eb65b6e9575/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/b73d6fda7de870c1f95eb65b6e9575/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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Processed 590000000 records
paired = 292443209
unpaired = 5750992
MERGED PAIRED END READS = 292443209
MATES PROCESSED = 590637410
TOTAL READS     = 298194201
DISTINCT READS  = 1.34586e+08
DISTINCT COUNTS = 1232
MAX COUNT       = 1299584
COUNTS OF 1     = 7.22795e+07
MAX TERMS       = 100
OBSERVED COUNTS (1299585)
1	72279504
2	31401331
3	14238032
4	6793255
5	3486569
6	1934963
7	1157788
8	741631
9	503629
10	358739
11	264398
12	203014
13	159254
14	128269
15	104737
16	86110
17	72639
18	61902
19	53225
20	45781
21	40272
22	35155
23	31084
24	27811
25	24623
26	22221
27	20234
28	18141
29	16560
30	15174
31	13667
32	12644
33	11707
34	10863
35	10134
36	9154
37	8660
38	7868
39	7443
40	7198
41	6533
42	6059
43	5574
44	5453
45	4985
46	4773
47	4615
48	4373
49	3999
50	3861
51	3591
52	3463
53	3233
54	3050
55	2871
56	2793
57	2693
58	2504
59	2493
60	2381
61	2183
62	2252
63	2052
64	1928
65	1974
66	1839
67	1847
68	1644
69	1608
70	1593
71	1544
72	1484
73	1469
74	1326
75	1274
76	1260
77	1164
78	1190
79	1097
80	1173
81	1055
82	1004
83	946
84	996
85	921
86	925
87	898
88	823
89	830
90	797
91	757
92	775
93	719
94	730
95	742
96	656
97	672
98	623
99	682
100	573
101	580
102	598
103	499
104	545
105	508
106	558
107	514
108	496
109	470
110	438
111	405
112	452
113	395
114	410
115	454
116	422
117	396
118	385
119	403
120	368
121	349
122	357
123	315
124	332
125	273
126	320
127	331
128	310
129	288
130	275
131	277
132	293
133	290
134	258
135	272
136	267
137	248
138	263
139	244
140	260
141	227
142	239
143	238
144	233
145	231
146	207
147	252
148	217
149	196
150	182
151	179
152	182
153	195
154	192
155	166
156	172
157	173
158	170
159	166
160	181
161	178
162	158
163	153
164	146
165	174
166	172
167	127
168	177
169	143
170	146
171	120
172	143
173	139
174	133
175	120
176	117
177	115
178	128
179	126
180	132
181	111
182	104
183	120
184	118
185	105
186	109
187	105
188	107
189	106
190	79
191	89
192	105
193	113
194	95
195	91
196	95
197	95
198	96
199	91
200	106
201	85
202	95
203	98
204	103
205	89
206	79
207	89
208	90
209	79
210	59
211	65
212	77
213	72
214	77
215	69
216	82
217	95
218	80
219	73
220	60
221	85
222	69
223	73
224	58
225	66
226	65
227	67
228	71
229	56
230	74
231	61
232	61
233	69
234	59
235	54
236	64
237	50
238	50
239	54
240	55
241	56
242	47
243	64
244	45
245	58
246	51
247	53
248	66
249	43
250	47
251	46
252	51
253	46
254	43
255	44
256	51
257	41
258	47
259	45
260	34
261	41
262	38
263	40
264	45
265	47
266	45
267	40
268	30
269	43
270	38
271	38
272	38
273	40
274	39
275	31
276	43
277	32
278	35
279	25
280	36
281	28
282	35
283	36
284	34
285	35
286	24
287	37
288	39
289	27
290	39
291	29
292	42
293	34
294	36
295	26
296	21
297	35
298	36
299	30
300	35
301	30
302	38
303	34
304	31
305	37
306	30
307	23
308	21
309	27
310	30
311	29
312	24
313	24
314	27
315	23
316	20
317	18
318	22
319	21
320	21
321	29
322	20
323	21
324	24
325	29
326	21
327	27
328	24
329	22
330	17
331	19
332	18
333	26
334	14
335	24
336	12
337	19
338	25
339	22
340	19
341	14
342	19
343	15
344	21
345	22
346	27
347	18
348	17
349	21
350	15
351	18
352	22
353	17
354	25
355	20
356	19
357	19
358	16
359	14
360	14
361	15
362	17
363	14
364	20
365	19
366	18
367	8
368	22
369	14
370	19
371	15
372	10
373	16
374	16
375	21
376	13
377	14
378	14
379	14
380	6
381	15
382	18
383	9
384	17
385	16
386	14
387	15
388	11
389	12
390	4
391	15
392	8
393	16
394	14
395	9
396	13
397	15
398	14
399	5
400	21
401	13
402	10
403	12
404	10
405	13
406	14
407	10
408	13
409	9
410	7
411	13
412	11
413	13
414	6
415	14
416	16
417	15
418	18
419	13
420	16
421	13
422	15
423	13
424	9
425	13
426	8
427	10
428	4
429	13
430	17
431	18
432	13
433	9
434	14
435	3
436	9
437	6
438	9
439	7
440	13
441	17
442	10
443	10
444	9
445	14
446	7
447	11
448	9
449	5
450	9
451	12
452	11
453	5
454	4
455	10
456	9
457	15
458	9
459	12
460	6
461	12
462	6
463	11
464	8
465	6
466	10
467	8
468	5
469	9
470	7
471	7
472	5
473	8
474	8
475	10
476	10
477	7
478	4
479	6
480	6
481	4
482	6
483	6
484	8
485	5
486	11
487	4
488	8
489	10
490	4
491	6
492	5
493	3
494	3
495	3
496	6
497	3
498	11
499	7
500	10
501	9
502	5
503	8
504	7
505	4
506	8
507	4
508	8
509	12
510	7
511	3
512	6
513	8
514	1
515	4
516	5
517	8
518	6
519	12
520	6
521	9
522	2
523	11
524	7
525	4
526	2
527	6
528	3
529	3
530	7
531	9
532	2
533	10
534	6
535	8
536	4
537	7
538	3
539	2
540	4
541	4
542	4
543	6
544	4
545	2
546	3
547	4
548	3
549	5
550	4
551	3
552	1
553	7
554	6
555	2
556	8
557	7
558	7
559	7
560	7
561	4
562	5
563	4
564	3
565	5
566	4
567	7
568	6
569	5
570	4
571	3
572	5
573	5
574	4
575	6
576	5
577	5
578	6
579	6
580	1
581	4
582	3
583	6
584	5
585	1
586	3
587	2
588	2
589	2
590	3
591	7
592	3
593	2
594	3
595	4
596	5
597	4
598	6
599	7
600	2
602	6
604	1
605	3
606	2
607	5
608	8
609	3
610	4
611	3
612	4
613	5
614	3
615	4
616	3
617	2
618	5
619	5
620	3
621	4
622	1
623	2
624	3
625	4
626	6
627	3
628	4
629	4
630	2
632	1
633	3
634	2
635	7
636	3
637	5
638	1
639	4
640	6
641	4
642	5
643	1
644	3
645	4
646	2
647	8
648	5
649	4
650	3
651	1
652	6
653	4
654	4
655	3
656	1
657	4
660	1
662	1
663	5
664	5
665	2
666	4
667	5
668	5
669	4
671	3
672	2
673	6
675	2
676	3
677	3
678	2
679	1
680	1
681	4
682	4
683	3
684	3
685	1
686	5
687	2
688	2
689	3
690	6
691	1
692	3
693	2
694	1
695	3
696	3
697	7
698	2
699	3
700	2
701	2
702	3
703	2
704	1
705	2
706	3
707	3
709	1
710	3
711	2
713	2
714	2
715	3
717	4
718	3
719	4
720	2
721	1
722	1
723	1
724	1
725	1
726	2
727	2
728	4
729	4
731	3
732	1
733	4
734	1
735	1
736	3
738	1
739	2
740	3
742	2
743	4
744	2
745	1
747	1
748	2
749	2
750	4
751	2
752	2
753	2
754	1
756	1
757	4
758	2
760	2
761	4
762	2
763	3
766	2
767	1
768	1
769	2
770	3
772	2
775	3
776	1
778	2
779	3
780	1
781	1
784	6
785	1
786	1
787	1
788	1
789	2
790	3
791	2
792	1
794	4
796	1
797	3
798	2
800	1
801	1
802	1
803	1
804	2
805	1
807	3
808	1
809	2
810	3
812	2
813	2
815	3
816	1
817	3
818	1
819	3
820	1
821	2
822	1
823	1
824	2
825	2
827	2
830	3
831	2
832	2
833	1
836	2
838	2
840	2
841	1
845	1
846	1
848	1
850	4
851	1
853	3
854	1
857	1
859	3
860	2
863	2
864	3
866	1
867	1
868	1
870	1
871	2
872	3
873	1
874	2
875	2
876	1
877	3
879	3
884	2
885	1
887	1
888	1
890	1
891	1
893	1
895	3
897	1
898	2
901	2
903	1
904	1
906	1
909	1
910	1
911	1
913	1
915	1
917	2
918	1
919	1
920	1
921	1
923	1
924	3
925	1
929	1
930	2
931	2
932	1
936	1
937	1
938	2
941	2
942	2
943	2
944	3
947	2
948	1
949	2
951	2
955	1
958	1
959	2
960	1
963	2
968	1
969	1
973	2
974	2
975	1
977	1
980	1
981	1
982	1
983	1
984	2
985	2
990	1
991	1
992	1
993	2
994	1
996	1
998	3
999	3
1000	1
1005	1
1006	1
1008	3
1013	2
1014	1
1015	1
1017	1
1020	1
1021	3
1023	1
1025	2
1029	1
1031	3
1032	2
1033	1
1034	1
1036	2
1037	1
1039	1
1041	2
1043	1
1045	2
1046	1
1048	1
1052	1
1054	1
1055	1
1056	1
1057	1
1059	1
1061	4
1062	1
1065	1
1066	2
1069	1
1070	1
1071	1
1072	1
1075	2
1079	1
1080	1
1082	2
1089	1
1091	2
1092	1
1093	1
1099	1
1100	2
1103	1
1104	2
1107	1
1110	1
1114	1
1120	1
1123	1
1126	1
1128	1
1129	1
1132	1
1135	1
1136	1
1138	1
1142	1
1148	1
1149	3
1150	1
1154	1
1156	1
1159	1
1160	2
1161	1
1162	2
1163	1
1165	1
1167	1
1170	3
1171	1
1177	2
1178	2
1181	1
1182	1
1185	1
1188	1
1190	1
1191	2
1195	1
1197	1
1198	1
1204	1
1205	1
1206	1
1208	2
1209	1
1211	2
1212	1
1216	2
1219	1
1222	1
1223	1
1225	1
1226	1
1229	1
1233	1
1234	1
1235	1
1238	1
1242	1
1244	2
1247	2
1249	1
1251	1
1260	2
1261	1
1265	2
1268	2
1270	1
1272	1
1279	1
1280	2
1283	1
1287	1
1291	1
1295	1
1300	1
1301	2
1303	1
1312	2
1314	1
1315	1
1316	1
1317	1
1324	1
1326	1
1334	2
1337	1
1339	1
1343	1
1345	1
1347	1
1350	3
1351	1
1355	1
1358	1
1360	1
1363	1
1364	2
1369	1
1370	1
1372	1
1374	2
1379	1
1386	4
1392	1
1393	1
1400	1
1403	1
1410	1
1412	1
1413	1
1422	2
1425	2
1434	1
1436	1
1438	1
1444	1
1445	1
1446	1
1449	1
1453	1
1455	1
1461	1
1464	1
1471	1
1474	1
1475	1
1484	1
1486	1
1491	1
1492	1
1493	1
1498	1
1499	1
1515	2
1517	1
1528	1
1530	1
1541	1
1544	3
1549	1
1552	1
1555	1
1558	1
1563	1
1570	1
1620	1
1622	1
1626	1
1630	1
1642	1
1654	1
1670	1
1671	1
1678	1
1682	1
1683	1
1705	1
1709	1
1710	1
1712	2
1714	1
1717	1
1726	2
1744	1
1754	1
1757	2
1767	2
1768	1
1780	1
1810	1
1824	2
1825	1
1827	1
1829	1
1831	1
1847	1
1853	2
1854	1
1855	1
1874	1
1875	1
1882	1
1898	1
1900	1
1907	1
1911	1
1919	2
1925	1
1930	1
1937	1
1962	2
1970	1
1976	1
1983	1
1993	1
2001	1
2005	1
2044	1
2049	1
2050	1
2054	1
2055	1
2058	1
2060	1
2065	1
2076	1
2081	1
2083	1
2093	1
2097	1
2101	1
2137	1
2142	1
2150	1
2155	1
2170	1
2198	1
2215	1
2222	1
2227	1
2239	1
2247	1
2261	1
2270	1
2274	1
2278	1
2307	2
2309	1
2314	1
2329	1
2353	1
2363	1
2364	1
2375	1
2386	1
2397	1
2415	1
2417	1
2420	1
2468	1
2511	1
2533	1
2542	1
2549	1
2553	1
2605	1
2607	1
2662	1
2690	1
2725	1
2748	1
2799	1
2808	1
2929	1
2965	1
2981	1
2992	1
3116	1
3142	1
3168	1
3289	1
3367	1
3398	1
3446	2
3474	1
3638	1
3673	1
3750	1
4032	1
4046	1
4188	1
4219	1
4275	1
4374	1
4470	1
4678	1
4692	1
4944	1
4985	1
5364	1
5772	1
7526	1
9637	1
11105	1
11733	1
12670	1
46661	1
1299584	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
............._.._.................._................_...................
._...............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]