Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/c2c1c36433c6911a2ceeb0585afc8c/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/3d06fe7e3a7e9d69fb322bcb7432a1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/3d06fe7e3a7e9d69fb322bcb7432a1/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory