Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/1a8098ad494c049c6fd20d5d8e685c/659_buD-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/2a85a3fd11cd35f73922f8f7184a39/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/2a85a3fd11cd35f73922f8f7184a39/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 291855785
unpaired = 6029017
MERGED PAIRED END READS = 291855785
MATES PROCESSED = 589740587
TOTAL READS     = 297884802
DISTINCT READS  = 1.38506e+08
DISTINCT COUNTS = 1081
MAX COUNT       = 1306842
COUNTS OF 1     = 7.3711e+07
MAX TERMS       = 100
OBSERVED COUNTS (1306843)
1	73711022
2	32780744
3	15038851
4	7185257
5	3651857
6	1991209
7	1168763
8	732936
9	486323
10	338801
11	245040
12	183925
13	141888
14	112092
15	89979
16	73965
17	61603
18	51940
19	43343
20	37452
21	32439
22	28205
23	24807
24	21850
25	19164
26	17277
27	15557
28	13831
29	12562
30	11455
31	10490
32	9582
33	8720
34	7856
35	7463
36	6719
37	6134
38	5800
39	5454
40	4956
41	4614
42	4358
43	3938
44	3842
45	3678
46	3429
47	3212
48	3051
49	2802
50	2678
51	2465
52	2413
53	2325
54	2266
55	2060
56	1912
57	1873
58	1741
59	1613
60	1568
61	1524
62	1484
63	1507
64	1389
65	1281
66	1298
67	1183
68	1081
69	1112
70	1047
71	1002
72	1023
73	921
74	895
75	843
76	843
77	848
78	782
79	729
80	698
81	754
82	710
83	650
84	583
85	596
86	620
87	565
88	523
89	521
90	533
91	506
92	463
93	481
94	462
95	467
96	475
97	392
98	433
99	387
100	444
101	369
102	368
103	360
104	343
105	344
106	317
107	330
108	316
109	310
110	309
111	306
112	270
113	273
114	285
115	228
116	249
117	265
118	236
119	245
120	242
121	218
122	215
123	231
124	219
125	220
126	208
127	223
128	205
129	195
130	200
131	198
132	195
133	161
134	173
135	165
136	188
137	154
138	138
139	148
140	161
141	144
142	159
143	145
144	121
145	154
146	144
147	132
148	139
149	127
150	132
151	129
152	119
153	109
154	118
155	111
156	122
157	116
158	93
159	109
160	100
161	105
162	109
163	90
164	86
165	82
166	73
167	84
168	100
169	91
170	96
171	87
172	95
173	84
174	76
175	91
176	67
177	86
178	84
179	60
180	57
181	109
182	69
183	82
184	70
185	82
186	66
187	72
188	69
189	67
190	77
191	61
192	57
193	58
194	49
195	46
196	58
197	70
198	56
199	69
200	46
201	57
202	57
203	57
204	53
205	56
206	47
207	43
208	53
209	44
210	51
211	48
212	50
213	40
214	47
215	38
216	45
217	53
218	37
219	35
220	39
221	42
222	40
223	53
224	47
225	39
226	38
227	39
228	32
229	35
230	34
231	31
232	37
233	40
234	32
235	43
236	31
237	30
238	39
239	43
240	37
241	39
242	31
243	28
244	30
245	27
246	20
247	37
248	34
249	27
250	19
251	24
252	22
253	29
254	26
255	34
256	28
257	31
258	15
259	31
260	22
261	21
262	28
263	24
264	27
265	28
266	25
267	31
268	26
269	23
270	20
271	26
272	25
273	19
274	21
275	31
276	20
277	22
278	25
279	29
280	23
281	16
282	21
283	13
284	24
285	21
286	25
287	21
288	15
289	22
290	21
291	16
292	20
293	16
294	18
295	11
296	17
297	18
298	16
299	21
300	18
301	16
302	17
303	18
304	13
305	19
306	22
307	18
308	11
309	14
310	15
311	17
312	20
313	11
314	15
315	12
316	17
317	11
318	13
319	9
320	9
321	9
322	15
323	11
324	22
325	13
326	15
327	14
328	7
329	19
330	13
331	19
332	9
333	14
334	10
335	18
336	17
337	13
338	15
339	11
340	10
341	14
342	10
343	7
344	8
345	15
346	10
347	11
348	9
349	17
350	16
351	10
352	16
353	9
354	13
355	13
356	5
357	11
358	10
359	10
360	16
361	9
362	8
363	11
364	12
365	9
366	8
367	9
368	13
369	11
370	10
371	9
372	6
373	6
374	13
375	7
376	9
377	14
378	11
379	11
380	4
381	5
382	13
383	11
384	16
385	11
386	8
387	6
388	8
389	3
390	10
391	8
392	8
393	4
394	10
395	8
396	2
397	7
398	6
399	6
400	13
401	7
402	8
403	9
404	9
405	4
406	5
407	3
408	7
409	8
410	11
411	5
412	2
413	8
414	4
415	6
416	3
417	6
418	6
419	6
420	5
421	9
422	5
423	7
424	5
425	4
426	5
427	6
428	9
429	5
430	3
431	7
432	3
433	3
434	7
435	9
436	4
437	6
438	12
439	8
440	8
441	2
442	3
443	8
444	8
445	7
446	8
447	5
448	8
449	3
450	8
451	2
452	7
453	6
454	9
455	6
456	6
457	3
458	2
459	9
460	7
461	5
462	4
463	6
464	4
465	5
466	12
467	5
468	6
469	9
470	5
471	4
472	4
473	6
474	3
475	4
476	7
477	1
478	2
479	7
480	5
481	2
482	4
483	6
484	2
485	9
486	6
487	5
488	4
489	3
490	3
491	3
492	4
493	2
494	4
495	6
496	6
497	2
498	3
499	5
501	4
502	4
503	1
504	5
505	5
506	3
507	2
508	3
509	5
510	6
511	3
512	5
513	4
514	7
515	4
516	6
517	4
518	8
519	2
520	2
521	5
522	5
523	2
524	9
525	3
526	1
527	1
528	5
529	2
530	2
531	2
532	6
533	3
534	3
535	2
536	3
537	3
538	4
539	5
540	2
541	1
542	2
543	2
544	4
545	1
546	6
547	4
548	2
549	2
550	5
551	2
552	5
553	4
554	2
556	4
557	4
558	3
559	1
560	3
561	5
562	1
564	6
565	2
566	4
567	2
568	1
569	2
570	3
571	4
573	2
574	1
575	2
576	5
577	2
578	7
579	3
580	2
581	1
582	3
583	1
584	2
585	8
586	3
587	3
588	8
589	3
590	3
591	3
593	2
594	1
595	2
596	2
597	4
598	5
599	1
600	1
601	3
602	2
603	1
604	2
605	1
606	4
607	4
608	5
609	1
610	2
611	2
612	5
613	2
614	5
615	1
616	4
617	3
619	2
620	5
621	3
622	3
623	3
624	2
625	1
626	2
627	3
628	2
629	3
631	1
632	2
633	3
635	6
636	3
637	4
638	1
639	2
641	2
642	1
643	4
644	1
645	1
646	1
647	3
648	1
649	1
651	2
652	1
653	1
654	2
655	2
656	3
657	2
658	1
659	2
660	1
661	4
663	3
664	2
666	3
667	3
668	1
670	6
671	1
672	1
673	2
674	1
676	2
677	1
678	2
679	2
682	1
683	2
684	1
685	3
686	1
687	2
688	2
689	2
690	2
691	1
693	1
695	1
696	3
697	1
698	2
699	3
700	4
702	4
703	1
705	2
706	3
709	1
711	3
712	2
713	1
715	2
716	1
718	2
719	1
720	1
721	1
722	2
723	2
724	2
726	1
727	2
728	1
730	2
731	2
732	1
733	1
734	1
735	1
736	2
737	1
739	1
740	1
741	2
742	6
743	2
745	1
747	1
748	4
749	1
752	1
753	1
754	1
756	1
757	2
758	1
765	2
766	2
768	1
772	1
773	1
775	2
776	1
777	1
778	1
779	1
780	1
782	3
783	1
784	3
786	1
788	2
790	1
793	1
795	1
796	1
797	3
801	1
805	1
807	1
808	1
810	1
814	1
815	2
816	1
819	1
820	2
821	2
822	2
828	1
831	1
832	1
833	1
835	1
836	1
837	2
839	2
842	1
843	1
844	3
846	1
847	1
849	1
850	2
853	1
857	1
863	1
867	1
868	1
870	1
873	1
874	3
875	1
877	2
884	1
885	1
889	2
890	2
891	3
894	1
895	1
896	1
897	1
899	1
901	1
905	2
907	1
908	1
909	1
910	3
919	1
920	1
921	1
924	2
928	3
930	1
935	2
936	2
937	1
941	1
942	1
943	2
945	1
946	1
949	1
951	1
959	1
963	1
964	1
965	1
967	1
969	1
971	1
974	1
979	1
981	1
991	2
992	1
994	2
998	1
1002	1
1006	1
1007	1
1008	1
1009	1
1010	1
1011	1
1014	1
1018	1
1019	1
1025	1
1030	1
1032	2
1035	1
1036	1
1038	1
1042	1
1044	3
1045	1
1047	1
1051	1
1055	2
1056	2
1057	1
1059	1
1062	1
1065	1
1070	1
1071	1
1074	1
1076	1
1077	1
1080	1
1083	1
1084	1
1086	1
1087	1
1089	1
1090	1
1092	1
1093	1
1097	1
1101	1
1105	1
1107	1
1108	1
1118	1
1122	1
1124	1
1131	1
1135	1
1144	1
1151	3
1154	1
1158	2
1161	1
1162	1
1164	1
1166	1
1177	1
1180	2
1181	1
1182	1
1187	1
1196	1
1199	3
1203	1
1205	2
1206	1
1207	1
1209	1
1212	1
1213	1
1214	1
1215	1
1217	1
1218	1
1221	1
1223	1
1225	1
1226	1
1234	1
1235	2
1236	2
1240	2
1242	1
1245	1
1250	1
1254	1
1273	1
1279	1
1283	1
1293	1
1295	1
1296	1
1315	1
1319	1
1328	1
1338	1
1344	1
1349	1
1352	1
1357	1
1360	1
1391	1
1398	1
1399	1
1407	1
1409	1
1411	1
1415	1
1418	1
1421	1
1430	1
1431	1
1445	1
1453	1
1459	1
1465	1
1474	1
1477	1
1491	1
1500	1
1515	1
1516	1
1520	1
1533	1
1534	1
1539	1
1545	1
1546	1
1551	2
1552	1
1560	2
1561	1
1562	1
1565	1
1576	1
1579	1
1580	1
1596	2
1606	1
1625	1
1631	1
1658	1
1672	1
1690	1
1693	1
1695	1
1709	1
1713	1
1717	1
1728	1
1729	1
1735	1
1752	1
1756	1
1775	1
1782	1
1789	1
1805	1
1806	1
1807	1
1823	1
1847	1
1853	1
1858	1
1861	1
1865	1
1866	1
1875	1
1885	1
1886	1
1899	1
1900	1
1913	1
1940	1
1952	1
1955	1
1958	1
1973	1
1991	2
2003	1
2005	1
2009	1
2012	1
2026	1
2035	1
2036	1
2050	1
2054	1
2056	1
2102	1
2104	1
2109	1
2118	1
2122	1
2134	1
2149	1
2157	1
2195	2
2205	1
2207	1
2216	1
2232	2
2238	1
2258	1
2286	1
2309	1
2345	1
2355	1
2373	1
2428	1
2462	1
2464	1
2495	1
2505	1
2509	1
2538	1
2573	1
2591	1
2622	1
2661	1
2675	2
2753	1
2795	1
2810	1
2839	1
2871	1
2905	1
2918	1
2928	1
3013	1
3071	1
3179	1
3251	1
3494	1
3614	1
3679	1
3712	1
3855	1
4287	1
4541	1
4622	1
5143	1
7345	1
8252	1
8557	1
11741	1
13679	1
54692	1
1306842	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
................................_........_..............................
..............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]