Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/341f139e02082a0ee2ff4e783383f3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/87eba6a4749c07ca181d77f2d2bde0/659_gK-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/341f139e02082a0ee2ff4e783383f3/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 292070413
unpaired = 5831578
MERGED PAIRED END READS = 292070413
MATES PROCESSED = 589972404
TOTAL READS     = 297901991
DISTINCT READS  = 1.42277e+08
DISTINCT COUNTS = 711
MAX COUNT       = 1437421
COUNTS OF 1     = 7.61421e+07
MAX TERMS       = 100
OBSERVED COUNTS (1437422)
1	76142120
2	33592224
3	15430626
4	7381930
5	3743724
6	2025323
7	1175158
8	724979
9	474280
10	324808
11	232196
12	172472
13	131538
14	103671
15	82291
16	66919
17	55051
18	45599
19	38533
20	32921
21	28214
22	24476
23	21375
24	18841
25	16832
26	14714
27	13050
28	11527
29	10454
30	9462
31	8637
32	7877
33	7212
34	6588
35	5900
36	5445
37	4946
38	4724
39	4247
40	4009
41	3637
42	3462
43	3085
44	2951
45	2718
46	2619
47	2409
48	2146
49	2106
50	2035
51	1841
52	1694
53	1590
54	1620
55	1563
56	1393
57	1387
58	1216
59	1103
60	1152
61	1105
62	1034
63	965
64	924
65	901
66	827
67	801
68	711
69	721
70	743
71	692
72	649
73	626
74	548
75	571
76	483
77	494
78	480
79	481
80	491
81	432
82	458
83	433
84	361
85	364
86	368
87	356
88	360
89	328
90	331
91	322
92	296
93	283
94	295
95	269
96	280
97	234
98	244
99	188
100	234
101	225
102	202
103	196
104	167
105	166
106	177
107	176
108	177
109	168
110	191
111	158
112	176
113	158
114	145
115	127
116	119
117	157
118	137
119	120
120	144
121	110
122	108
123	109
124	99
125	107
126	97
127	113
128	100
129	106
130	86
131	100
132	95
133	80
134	104
135	77
136	76
137	101
138	68
139	78
140	63
141	70
142	69
143	67
144	60
145	66
146	76
147	72
148	61
149	68
150	53
151	56
152	43
153	71
154	60
155	46
156	53
157	68
158	38
159	41
160	49
161	50
162	40
163	43
164	38
165	34
166	40
167	39
168	25
169	39
170	41
171	37
172	39
173	31
174	31
175	38
176	35
177	33
178	26
179	28
180	28
181	41
182	31
183	28
184	17
185	25
186	31
187	33
188	32
189	30
190	26
191	20
192	27
193	31
194	19
195	18
196	22
197	23
198	27
199	21
200	30
201	20
202	26
203	15
204	15
205	22
206	16
207	18
208	17
209	26
210	22
211	19
212	18
213	14
214	13
215	17
216	18
217	20
218	14
219	16
220	17
221	23
222	13
223	16
224	15
225	18
226	14
227	14
228	22
229	14
230	12
231	9
232	12
233	15
234	13
235	14
236	16
237	17
238	10
239	11
240	10
241	8
242	13
243	11
244	16
245	8
246	12
247	15
248	6
249	9
250	9
251	15
252	7
253	6
254	12
255	9
256	12
257	9
258	8
259	14
260	8
261	8
262	7
263	6
264	6
265	11
266	12
267	11
268	7
269	9
270	11
271	7
272	6
273	13
274	8
275	9
276	9
277	6
278	3
279	3
280	12
281	11
282	5
283	4
284	4
285	12
286	3
287	3
288	7
289	4
290	2
291	5
292	6
293	5
294	4
295	5
296	6
297	7
298	2
299	8
300	7
301	7
302	7
303	3
304	9
305	11
306	7
307	8
308	10
309	7
310	5
311	7
312	3
313	2
314	2
315	8
316	4
317	3
318	5
319	5
320	1
321	5
322	6
323	4
324	6
325	1
326	3
327	8
328	4
329	3
330	1
331	2
332	4
333	7
334	6
335	3
336	3
337	6
338	1
339	3
340	6
341	4
342	4
343	7
344	6
345	4
346	1
347	3
348	1
349	2
350	4
351	3
352	4
353	4
354	3
356	3
357	3
358	2
359	4
360	1
361	1
362	1
363	4
364	1
365	4
366	6
367	2
368	4
369	5
370	2
372	3
373	1
374	3
375	2
377	2
378	5
379	1
380	2
381	2
383	2
384	3
385	2
386	3
388	3
389	1
390	1
391	1
392	1
393	1
394	2
395	3
397	2
398	3
399	3
400	1
401	1
402	1
403	2
404	1
405	3
406	2
407	4
408	1
410	1
411	1
412	1
413	1
414	2
415	5
416	1
417	1
418	1
419	2
420	2
421	2
422	1
423	2
424	1
425	1
426	1
427	2
428	2
429	2
432	1
434	1
435	3
436	1
437	2
438	1
439	2
440	3
441	5
442	2
443	1
444	1
445	1
446	1
448	1
449	1
451	3
452	1
454	2
456	2
457	3
458	1
460	1
461	2
463	2
465	3
466	1
467	3
468	1
469	3
470	1
471	1
472	2
473	2
474	1
477	2
480	1
482	2
483	2
484	2
485	2
487	1
488	1
489	2
491	3
492	1
494	1
495	1
496	1
497	2
498	3
499	2
500	1
503	1
504	3
506	2
507	1
508	1
509	1
510	1
511	2
512	6
513	1
514	2
516	1
519	1
520	2
521	1
523	1
524	1
527	1
529	1
531	1
533	3
535	1
536	1
537	2
538	1
539	1
541	1
542	2
544	2
545	1
548	1
549	1
550	2
551	2
552	1
554	1
555	2
556	2
557	2
558	1
559	1
563	1
567	1
569	1
576	1
579	1
582	1
583	1
584	1
586	1
587	1
590	2
593	1
600	1
602	1
603	1
607	1
608	2
610	1
611	1
612	1
615	1
620	3
622	1
623	2
628	1
632	1
633	2
634	1
639	1
641	1
649	1
654	1
655	1
657	1
658	1
662	1
664	1
665	1
666	1
667	1
669	1
670	1
672	2
673	1
682	1
690	1
694	1
697	1
700	1
705	1
706	1
707	1
708	1
709	1
712	2
714	1
721	1
728	1
733	2
743	1
744	2
747	1
749	1
752	1
756	1
766	1
769	1
771	2
773	1
774	1
776	1
777	1
783	1
785	1
790	1
795	1
808	1
810	1
816	1
822	2
828	1
836	1
839	1
857	1
860	1
869	2
873	1
876	2
878	1
888	1
924	2
940	1
945	1
948	1
968	1
985	1
1004	1
1019	1
1037	2
1042	1
1052	1
1070	1
1097	1
1115	1
1126	1
1138	1
1187	1
1207	1
1253	1
1271	1
1320	1
1332	1
1400	1
1411	1
1413	1
1428	1
1432	1
1477	1
1489	1
1495	1
1498	1
1521	1
1536	1
1552	1
1566	1
1686	1
1689	1
1736	1
1751	1
1758	1
1769	1
1777	1
1840	1
1851	1
1858	1
1876	1
1878	1
1906	1
1918	1
1944	1
1949	1
1984	1
1990	1
1991	2
1993	1
2021	1
2022	1
2025	1
2041	1
2045	1
2063	1
2080	1
2087	1
2140	1
2200	1
2248	1
2263	1
2273	1
2292	1
2299	1
2303	1
2313	1
2314	1
2330	1
2331	1
2370	1
2376	1
2393	1
2397	1
2435	1
2444	1
2451	1
2539	1
2549	1
2576	1
2654	1
2819	1
2917	1
3050	1
3114	1
3130	1
3186	1
3222	1
3276	1
3492	1
3760	1
3965	1
4423	1
5250	1
8431	1
9409	1
14978	1
18360	1
64428	1
1437421	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
....._..........._.___......_._.._...._._...............................
.._...._..............._..._..............
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]