Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bNS-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bNS-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_bNS-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:57:32.362 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:57:32 GMT 2026] MarkDuplicates --INPUT 659_bNS-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bNS-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_bNS-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:57:32 GMT 2026] Executing as ?@nf-01abfbefebb896799a5a678a07d0dacb-c56c6-86ffh on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:57:32 MarkDuplicates Start of doWork freeMemory: 105492088; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:57:32 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:57:32 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,336,084
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 3822 as yet unmatched pairs. 340 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:2,189,601
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 7394 as yet unmatched pairs. 348 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:6,785,547
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 13864 as yet unmatched pairs. 3180 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:9,653,570
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 13484 as yet unmatched pairs. 63 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:12,276,136
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 16786 as yet unmatched pairs. 323 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:16,936,689
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 19490 as yet unmatched pairs. 208 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:19,597,089
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 25185 as yet unmatched pairs. 2856 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:21,834,841
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 26152 as yet unmatched pairs. 769 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:22,521,646
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 28757 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:23,337,761
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 32644 as yet unmatched pairs. 1225 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:26,284,144
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 35004 as yet unmatched pairs. 730 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:27,550,669
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 37589 as yet unmatched pairs. 419 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:31,028,805
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 41122 as yet unmatched pairs. 900 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:32,754,121
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 44090 as yet unmatched pairs. 753 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:35,609,262
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 47564 as yet unmatched pairs. 1156 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:39,283,944
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 50351 as yet unmatched pairs. 866 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:39,562,370
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 53870 as yet unmatched pairs. 1823 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:43,307,226
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 55492 as yet unmatched pairs. 434 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:44,776,680
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 66561 as yet unmatched pairs. 8316 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:47,219,011
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 61112 as yet unmatched pairs. 163 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:54,787,720
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 63961 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:65,570,718
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 66960 as yet unmatched pairs. 172 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:85,581,490
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 71585 as yet unmatched pairs. 2038 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:94,821,028
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 72564 as yet unmatched pairs. 311 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:109,237,750
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 75268 as yet unmatched pairs. 571 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:112,699,710
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 77873 as yet unmatched pairs. 278 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:114,730,523
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 81695 as yet unmatched pairs. 1335 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:119,919,404
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 85916 as yet unmatched pairs. 2949 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:120,833,707
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 85930 as yet unmatched pairs. 468 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:146,156,461
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 88743 as yet unmatched pairs. 1464 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:148,953,038
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 89257 as yet unmatched pairs. 411 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:150,081,390
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 91173 as yet unmatched pairs. 533 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:150,747,781
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 94822 as yet unmatched pairs. 1316 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:151,400,177
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 97904 as yet unmatched pairs. 1637 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:153,662,446
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 99898 as yet unmatched pairs. 895 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:154,172,973
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 107735 as yet unmatched pairs. 6029 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:154,929,081
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 105134 as yet unmatched pairs. 718 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 2s. Last read position: chr1:155,186,070
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 114534 as yet unmatched pairs. 6848 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:155,190,062
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 112273 as yet unmatched pairs. 2500 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:155,346,468
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 112173 as yet unmatched pairs. 332 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:156,070,286
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 114825 as yet unmatched pairs. 403 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:156,138,822
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 124895 as yet unmatched pairs. 6849 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr1:157,125,810
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 121330 as yet unmatched pairs. 298 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:160,420,429
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 123821 as yet unmatched pairs. 123 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:161,544,834
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 127894 as yet unmatched pairs. 1368 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:168,312,705
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 129491 as yet unmatched pairs. 120 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:171,796,549
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 132326 as yet unmatched pairs. 232 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:180,632,108
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 135883 as yet unmatched pairs. 1101 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:183,132,453
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 138187 as yet unmatched pairs. 368 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:186,336,568
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 141682 as yet unmatched pairs. 1251 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:200,909,142
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 143229 as yet unmatched pairs. 307 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr1:202,944,987
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 148344 as yet unmatched pairs. 2435 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:204,259,366
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 149113 as yet unmatched pairs. 498 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:206,934,419
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 152726 as yet unmatched pairs. 1443 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:207,359,552
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 156255 as yet unmatched pairs. 2118 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:211,663,322
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 156862 as yet unmatched pairs. 23 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:223,544,800
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 159672 as yet unmatched pairs. 162 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr1:225,519,489
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 162463 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr1:226,736,761
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 166028 as yet unmatched pairs. 1006 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:228,743,282
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 169189 as yet unmatched pairs. 533 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr1:234,609,404
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 172749 as yet unmatched pairs. 822 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr1:244,841,946
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 175404 as yet unmatched pairs. 705 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 3s. Last read position: chr2:1,684,080
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 177977 as yet unmatched pairs. 176626 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr2:20,037,592
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 182861 as yet unmatched pairs. 181481 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr2:25,743,905
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 183991 as yet unmatched pairs. 182599 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:28,657,682
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 186985 as yet unmatched pairs. 185555 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,253
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 235629 as yet unmatched pairs. 185332 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 392382 as yet unmatched pairs. 176135 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 1080661 as yet unmatched pairs. 134904 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 1496664 as yet unmatched pairs. 109580 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 1501507 as yet unmatched pairs. 109310 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:36,476,953
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 1591038 as yet unmatched pairs. 104140 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:42,708,938
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 1587844 as yet unmatched pairs. 100927 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:46,382,486
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 1587324 as yet unmatched pairs. 100370 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:54,649,146
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 1583238 as yet unmatched pairs. 96247 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:61,839,777
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 1578697 as yet unmatched pairs. 91684 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:70,087,839
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 1577464 as yet unmatched pairs. 90420 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:74,370,230
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 1573664 as yet unmatched pairs. 86601 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:85,550,940
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 1570683 as yet unmatched pairs. 83606 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:85,663,706
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 1593676 as yet unmatched pairs. 106540 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:85,667,147
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 1585987 as yet unmatched pairs. 98822 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:95,288,494
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 1562456 as yet unmatched pairs. 75269 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:99,376,626
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 1558257 as yet unmatched pairs. 71042 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:108,754,925
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 1557207 as yet unmatched pairs. 69975 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:111,847,733
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 1554088 as yet unmatched pairs. 66848 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 2s. Last read position: chr2:121,216,610
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 1551670 as yet unmatched pairs. 64416 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:135,058,027
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 1549331 as yet unmatched pairs. 62036 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:157,415,631
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 1546729 as yet unmatched pairs. 59420 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:169,238,255
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 1543614 as yet unmatched pairs. 56290 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:177,219,143
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 1542459 as yet unmatched pairs. 55102 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:188,974,417
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 1541347 as yet unmatched pairs. 53965 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:189,039,411
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 1536529 as yet unmatched pairs. 49120 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:191,835,953
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 1534688 as yet unmatched pairs. 47259 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:201,193,077
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 1530100 as yet unmatched pairs. 42657 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:207,711,993
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 1527505 as yet unmatched pairs. 40037 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,367,908
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 1532870 as yet unmatched pairs. 45384 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,356
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 1542648 as yet unmatched pairs. 55160 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,251
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 1537939 as yet unmatched pairs. 50427 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:215,388,283
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 1534726 as yet unmatched pairs. 47214 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 2s. Last read position: chr2:215,406,252
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 1527927 as yet unmatched pairs. 40411 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:215,410,105
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 1523149 as yet unmatched pairs. 35625 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr2:215,428,267
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 1519766 as yet unmatched pairs. 32237 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:216,499,354
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 1522126 as yet unmatched pairs. 34581 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:218,385,099
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 1503988 as yet unmatched pairs. 16425 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:219,570,689
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 1500738 as yet unmatched pairs. 13151 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 2s. Last read position: chr2:231,455,190
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 1498170 as yet unmatched pairs. 10552 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:237,340,726
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 1497081 as yet unmatched pairs. 9446 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:237,518,594
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 1493121 as yet unmatched pairs. 5472 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:241,239,719
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 1490020 as yet unmatched pairs. 2353 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr3:9,450,254
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 1486518 as yet unmatched pairs. 78469 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:12,839,450
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 1488403 as yet unmatched pairs. 80329 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:17,010,816
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 1480955 as yet unmatched pairs. 72850 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:33,581,715
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 1478097 as yet unmatched pairs. 69962 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:39,411,697
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 1480467 as yet unmatched pairs. 72312 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:42,698,708
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 1472145 as yet unmatched pairs. 63974 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr3:47,411,897
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 1469378 as yet unmatched pairs. 61186 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr3:48,694,831
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 1467591 as yet unmatched pairs. 59390 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr3:49,163,136
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 1462945 as yet unmatched pairs. 54719 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:50,065,030
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 1459802 as yet unmatched pairs. 51561 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:51,993,707
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 1457593 as yet unmatched pairs. 49334 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:52,737,585
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 1453887 as yet unmatched pairs. 45622 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:58,169,632
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 1451922 as yet unmatched pairs. 43618 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:73,384,524
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 1448498 as yet unmatched pairs. 40149 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:100,794,959
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 1446053 as yet unmatched pairs. 37664 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr3:113,026,797
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 1443154 as yet unmatched pairs. 34744 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:122,577,841
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 1440671 as yet unmatched pairs. 32235 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:127,005,006
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 1438151 as yet unmatched pairs. 29680 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:129,302,099
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 1434897 as yet unmatched pairs. 26409 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:133,945,240
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 1431975 as yet unmatched pairs. 23468 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:143,028,333
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 1429375 as yet unmatched pairs. 20864 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr3:151,448,111
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 1426388 as yet unmatched pairs. 17862 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:161,429,466
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 1423410 as yet unmatched pairs. 14860 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:179,656,789
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 1421203 as yet unmatched pairs. 12609 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:184,317,474
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 1419139 as yet unmatched pairs. 10525 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:187,729,245
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 1416391 as yet unmatched pairs. 7768 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:194,359,829
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 1413115 as yet unmatched pairs. 4461 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:195,782,695
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 1413150 as yet unmatched pairs. 4489 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:198,134,341
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 1408683 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr4:1,717,154
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 1406277 as yet unmatched pairs. 66756 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:3,187,815
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 1402254 as yet unmatched pairs. 62725 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:8,227,452
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 1398963 as yet unmatched pairs. 59410 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:24,795,612
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 1396672 as yet unmatched pairs. 57083 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:25,662,733
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 1457428 as yet unmatched pairs. 117816 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:25,666,135
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 1457714 as yet unmatched pairs. 118102 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:25,669,645
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 1432375 as yet unmatched pairs. 92747 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 2s. Last read position: chr4:25,671,678
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 1448690 as yet unmatched pairs. 109055 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:25,674,331
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 1412138 as yet unmatched pairs. 72483 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:25,676,212
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 1434075 as yet unmatched pairs. 94420 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:25,676,533
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 1420947 as yet unmatched pairs. 81276 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:39,103,288
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 1374734 as yet unmatched pairs. 35049 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:42,464,790
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 1371818 as yet unmatched pairs. 32115 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:56,483,261
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 1369265 as yet unmatched pairs. 29544 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr4:73,870,736
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 1366352 as yet unmatched pairs. 26603 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr4:77,871,744
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 1363607 as yet unmatched pairs. 23849 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr4:87,131,130
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 1361151 as yet unmatched pairs. 21382 records in RAM.
INFO 2026-06-08 09:02:25 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr4:99,076,407
INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 1358779 as yet unmatched pairs. 18984 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr4:107,989,977
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 1356593 as yet unmatched pairs. 16774 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr4:121,671,574
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 1353839 as yet unmatched pairs. 13995 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr4:140,153,205
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 1350286 as yet unmatched pairs. 10421 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr4:151,102,999
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 1353680 as yet unmatched pairs. 13797 records in RAM.
INFO 2026-06-08 09:02:35 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr4:163,166,371
INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 1345027 as yet unmatched pairs. 5115 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:183,280,879
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 1342101 as yet unmatched pairs. 2175 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr5:1,008,915
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 1339034 as yet unmatched pairs. 106786 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:6,633,715
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 1335725 as yet unmatched pairs. 103456 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:14,368,878
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 1333186 as yet unmatched pairs. 100910 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:17,354,217
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 1329687 as yet unmatched pairs. 97375 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:38,481,626
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 1327881 as yet unmatched pairs. 95550 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:43,535,578
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 1325303 as yet unmatched pairs. 92964 records in RAM.
INFO 2026-06-08 09:02:49 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:56,881,940
INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 1322108 as yet unmatched pairs. 89744 records in RAM.
INFO 2026-06-08 09:02:51 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:69,419,437
INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 1319665 as yet unmatched pairs. 87290 records in RAM.
INFO 2026-06-08 09:02:53 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:73,068,908
INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 1317755 as yet unmatched pairs. 85369 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:79,616,299
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 1315122 as yet unmatched pairs. 82703 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr5:83,553,477
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 1313690 as yet unmatched pairs. 81251 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:96,702,827
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 1312244 as yet unmatched pairs. 79771 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:112,821,907
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 1307264 as yet unmatched pairs. 74768 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:126,810,301
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 1304535 as yet unmatched pairs. 72018 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:134,158,458
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 1304781 as yet unmatched pairs. 72246 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:138,345,465
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 1299300 as yet unmatched pairs. 66751 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:138,933,818
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 1298566 as yet unmatched pairs. 66003 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:140,647,296
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 1293311 as yet unmatched pairs. 60721 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:141,366,044
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 1290662 as yet unmatched pairs. 58067 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:142,314,172
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 1288410 as yet unmatched pairs. 55809 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:150,050,294
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 1285477 as yet unmatched pairs. 52840 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:150,379,668
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 1281671 as yet unmatched pairs. 49027 records in RAM.
INFO 2026-06-08 09:03:17 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,233
INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 1380554 as yet unmatched pairs. 147906 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr5:150,404,690
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 1338225 as yet unmatched pairs. 105576 records in RAM.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,144
INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 1398349 as yet unmatched pairs. 165693 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,947
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 1318577 as yet unmatched pairs. 85917 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:150,521,439
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 1266645 as yet unmatched pairs. 33975 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr5:151,664,225
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 1265636 as yet unmatched pairs. 32950 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:157,314,982
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 1260666 as yet unmatched pairs. 27954 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:168,806,474
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 1258656 as yet unmatched pairs. 25921 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,799
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 1279188 as yet unmatched pairs. 46435 records in RAM.
INFO 2026-06-08 09:03:33 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr5:172,670,065
INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 1253499 as yet unmatched pairs. 20739 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr5:176,651,762
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 1250469 as yet unmatched pairs. 17694 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr5:177,605,188
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 1247085 as yet unmatched pairs. 14286 records in RAM.
INFO 2026-06-08 09:03:38 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr5:179,765,847
INFO 2026-06-08 09:03:38 MarkDuplicates Tracking 1244312 as yet unmatched pairs. 11499 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr5:179,824,283
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 1261854 as yet unmatched pairs. 29037 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr5:180,335,800
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 1237732 as yet unmatched pairs. 4913 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr5:181,238,181
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 1248616 as yet unmatched pairs. 15791 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 2s. Last read position: chr6:4,892,159
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 1231031 as yet unmatched pairs. 74417 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:11,094,364
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 1227785 as yet unmatched pairs. 71165 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:20,649,321
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 1225175 as yet unmatched pairs. 68520 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:27,138,599
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 1222635 as yet unmatched pairs. 65965 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:30,489,549
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 1220356 as yet unmatched pairs. 63677 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:30,987,127
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 1217054 as yet unmatched pairs. 60367 records in RAM.
INFO 2026-06-08 09:03:56 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:31,630,619
INFO 2026-06-08 09:03:56 MarkDuplicates Tracking 1214959 as yet unmatched pairs. 58264 records in RAM.
INFO 2026-06-08 09:03:58 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,454
INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 1211612 as yet unmatched pairs. 54902 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:31,958,335
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 1209363 as yet unmatched pairs. 52645 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:32,056,703
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 1209949 as yet unmatched pairs. 53223 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:32,200,836
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 1205003 as yet unmatched pairs. 48265 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:32,843,030
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 1202755 as yet unmatched pairs. 46007 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:33,269,164
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 1198763 as yet unmatched pairs. 42007 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:33,680,374
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 1196101 as yet unmatched pairs. 39334 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:36,225,320
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 1193099 as yet unmatched pairs. 36317 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 2s. Last read position: chr6:42,057,409
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 1189980 as yet unmatched pairs. 33174 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 2s. Last read position: chr6:43,771,024
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 1187571 as yet unmatched pairs. 30746 records in RAM.
INFO 2026-06-08 09:04:15 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:49,447,690
INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 1183761 as yet unmatched pairs. 26920 records in RAM.
INFO 2026-06-08 09:04:17 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:73,519,427
INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 1183007 as yet unmatched pairs. 26110 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:89,080,838
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 1182148 as yet unmatched pairs. 25224 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:109,446,341
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 1176330 as yet unmatched pairs. 19403 records in RAM.
INFO 2026-06-08 09:04:21 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:117,387,787
INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 1175546 as yet unmatched pairs. 18587 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:131,135,699
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 1170650 as yet unmatched pairs. 13655 records in RAM.
INFO 2026-06-08 09:04:24 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:139,373,786
INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 1170690 as yet unmatched pairs. 13688 records in RAM.
INFO 2026-06-08 09:04:26 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr6:151,353,353
INFO 2026-06-08 09:04:26 MarkDuplicates Tracking 1164940 as yet unmatched pairs. 7923 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,876
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 1161977 as yet unmatched pairs. 4955 records in RAM.
INFO 2026-06-08 09:04:29 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:163,566,728
INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 1162205 as yet unmatched pairs. 5178 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 3s. Last read position: chr7:919,987
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 1156729 as yet unmatched pairs. 76840 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:5,312,622
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 1153306 as yet unmatched pairs. 73395 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,041
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 1175157 as yet unmatched pairs. 95226 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 2s. Last read position: chr7:5,529,538
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 1157991 as yet unmatched pairs. 78047 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:16,610,603
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 1143702 as yet unmatched pairs. 63738 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:27,794,364
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 1141312 as yet unmatched pairs. 61334 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:40,094,602
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 1138423 as yet unmatched pairs. 58419 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:44,113,724
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 1136306 as yet unmatched pairs. 56282 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:47,439,625
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 1132451 as yet unmatched pairs. 52411 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:56,079,760
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 1130821 as yet unmatched pairs. 50777 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,194
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 1127608 as yet unmatched pairs. 47553 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:74,746,380
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 1124449 as yet unmatched pairs. 44372 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,841
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 1130280 as yet unmatched pairs. 50184 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:84,983,705
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 1119351 as yet unmatched pairs. 39249 records in RAM.
INFO 2026-06-08 09:04:56 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr7:94,404,558
INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 1124098 as yet unmatched pairs. 43986 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:94,428,354
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 1115434 as yet unmatched pairs. 35312 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:99,423,808
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 1110787 as yet unmatched pairs. 30649 records in RAM.
INFO 2026-06-08 09:05:01 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:100,578,417
INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 1108084 as yet unmatched pairs. 27937 records in RAM.
INFO 2026-06-08 09:06:00 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 59s. Last read position: chr7:101,316,496
INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 1104712 as yet unmatched pairs. 24564 records in RAM.
INFO 2026-06-08 09:06:02 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr7:102,660,211
INFO 2026-06-08 09:06:02 MarkDuplicates Tracking 1104129 as yet unmatched pairs. 23980 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr7:111,740,893
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 1100593 as yet unmatched pairs. 20429 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr7:122,663,469
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 1098877 as yet unmatched pairs. 18704 records in RAM.
INFO 2026-06-08 09:06:07 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr7:128,479,176
INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 1095296 as yet unmatched pairs. 15107 records in RAM.
INFO 2026-06-08 09:06:09 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:137,513,841
INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 1092747 as yet unmatched pairs. 12534 records in RAM.
INFO 2026-06-08 09:06:10 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr7:140,800,409
INFO 2026-06-08 09:06:10 MarkDuplicates Tracking 1090122 as yet unmatched pairs. 9906 records in RAM.
INFO 2026-06-08 09:06:12 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr7:149,154,070
INFO 2026-06-08 09:06:12 MarkDuplicates Tracking 1086989 as yet unmatched pairs. 6761 records in RAM.
INFO 2026-06-08 09:06:14 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr7:151,081,630
INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 1084673 as yet unmatched pairs. 4437 records in RAM.
INFO 2026-06-08 09:06:15 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr7:158,759,452
INFO 2026-06-08 09:06:15 MarkDuplicates Tracking 1081619 as yet unmatched pairs. 1366 records in RAM.
INFO 2026-06-08 09:06:18 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr8:11,847,785
INFO 2026-06-08 09:06:18 MarkDuplicates Tracking 1081883 as yet unmatched pairs. 65752 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:18,075,561
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 1075389 as yet unmatched pairs. 59246 records in RAM.
INFO 2026-06-08 09:06:21 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:22,164,030
INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 1077191 as yet unmatched pairs. 61035 records in RAM.
INFO 2026-06-08 09:06:23 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 2s. Last read position: chr8:23,111,757
INFO 2026-06-08 09:06:23 MarkDuplicates Tracking 1069460 as yet unmatched pairs. 53296 records in RAM.
INFO 2026-06-08 09:06:25 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:28,113,018
INFO 2026-06-08 09:06:25 MarkDuplicates Tracking 1065807 as yet unmatched pairs. 49629 records in RAM.
INFO 2026-06-08 09:06:26 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:37,844,684
INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 1062879 as yet unmatched pairs. 46683 records in RAM.
INFO 2026-06-08 09:06:28 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:38,820,199
INFO 2026-06-08 09:06:28 MarkDuplicates Tracking 1063267 as yet unmatched pairs. 47064 records in RAM.
INFO 2026-06-08 09:06:29 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:42,398,733
INFO 2026-06-08 09:06:29 MarkDuplicates Tracking 1058185 as yet unmatched pairs. 41976 records in RAM.
INFO 2026-06-08 09:06:31 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:53,967,972
INFO 2026-06-08 09:06:31 MarkDuplicates Tracking 1054685 as yet unmatched pairs. 38470 records in RAM.
INFO 2026-06-08 09:06:33 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:65,745,411
INFO 2026-06-08 09:06:33 MarkDuplicates Tracking 1051793 as yet unmatched pairs. 35565 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:76,704,551
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 1049564 as yet unmatched pairs. 33324 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:96,593,563
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 1047197 as yet unmatched pairs. 30941 records in RAM.
INFO 2026-06-08 09:06:38 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:100,713,086
INFO 2026-06-08 09:06:38 MarkDuplicates Tracking 1046847 as yet unmatched pairs. 30582 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:108,217,377
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 1043308 as yet unmatched pairs. 27023 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr8:123,253,717
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 1038403 as yet unmatched pairs. 22097 records in RAM.
INFO 2026-06-08 09:06:42 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:132,794,410
INFO 2026-06-08 09:06:42 MarkDuplicates Tracking 1035339 as yet unmatched pairs. 19020 records in RAM.
INFO 2026-06-08 09:06:44 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:143,021,701
INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 1034738 as yet unmatched pairs. 18405 records in RAM.
INFO 2026-06-08 09:06:45 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,816,559
INFO 2026-06-08 09:06:45 MarkDuplicates Tracking 1028983 as yet unmatched pairs. 12636 records in RAM.
INFO 2026-06-08 09:06:47 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,850
INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 1027202 as yet unmatched pairs. 10855 records in RAM.
INFO 2026-06-08 09:06:48 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,924,398
INFO 2026-06-08 09:06:48 MarkDuplicates Tracking 1024333 as yet unmatched pairs. 7970 records in RAM.
INFO 2026-06-08 09:06:50 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr8:144,179,543
INFO 2026-06-08 09:06:50 MarkDuplicates Tracking 1020448 as yet unmatched pairs. 4077 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:144,842,127
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 1016879 as yet unmatched pairs. 503 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr9:14,120,523
INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 1018135 as yet unmatched pairs. 61223 records in RAM.
INFO 2026-06-08 09:06:55 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:32,572,801
INFO 2026-06-08 09:06:55 MarkDuplicates Tracking 1011831 as yet unmatched pairs. 54899 records in RAM.
INFO 2026-06-08 09:06:57 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:35,072,337
INFO 2026-06-08 09:06:57 MarkDuplicates Tracking 1009779 as yet unmatched pairs. 52843 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:36,147,838
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 1006072 as yet unmatched pairs. 49129 records in RAM.
INFO 2026-06-08 09:07:00 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:72,909,702
INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 1002938 as yet unmatched pairs. 45976 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:87,700,199
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 1000180 as yet unmatched pairs. 43205 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:94,441,007
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 997374 as yet unmatched pairs. 40379 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:104,817,351
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 994600 as yet unmatched pairs. 37587 records in RAM.
INFO 2026-06-08 09:07:06 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:111,897,176
INFO 2026-06-08 09:07:06 MarkDuplicates Tracking 991875 as yet unmatched pairs. 34850 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:115,035,282
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 991564 as yet unmatched pairs. 34530 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:121,302,125
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 986783 as yet unmatched pairs. 29748 records in RAM.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:125,241,061
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 984659 as yet unmatched pairs. 27613 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:127,872,821
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 979887 as yet unmatched pairs. 22829 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:128,693,703
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 976900 as yet unmatched pairs. 19832 records in RAM.
INFO 2026-06-08 09:07:16 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:130,872,146
INFO 2026-06-08 09:07:16 MarkDuplicates Tracking 975590 as yet unmatched pairs. 18518 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:132,376,022
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 970445 as yet unmatched pairs. 13366 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:134,730,350
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 967658 as yet unmatched pairs. 10562 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:136,464,446
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 964626 as yet unmatched pairs. 7527 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:136,979,999
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 962952 as yet unmatched pairs. 5840 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr9:137,744,079
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 957480 as yet unmatched pairs. 356 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr10:7,566,142
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 954823 as yet unmatched pairs. 53923 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:17,898,033
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 951861 as yet unmatched pairs. 50931 records in RAM.
INFO 2026-06-08 09:07:30 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:30,027,526
INFO 2026-06-08 09:07:30 MarkDuplicates Tracking 949228 as yet unmatched pairs. 48281 records in RAM.
INFO 2026-06-08 09:07:32 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:34,382,590
INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 946575 as yet unmatched pairs. 45611 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,788
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 946070 as yet unmatched pairs. 45080 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:59,653,673
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 941679 as yet unmatched pairs. 40678 records in RAM.
INFO 2026-06-08 09:07:37 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr10:69,227,206
INFO 2026-06-08 09:07:37 MarkDuplicates Tracking 938664 as yet unmatched pairs. 37652 records in RAM.
INFO 2026-06-08 09:07:39 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:72,274,972
INFO 2026-06-08 09:07:39 MarkDuplicates Tracking 943232 as yet unmatched pairs. 42204 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:74,842,995
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 932686 as yet unmatched pairs. 31640 records in RAM.
INFO 2026-06-08 09:07:42 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:79,557,362
INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 956832 as yet unmatched pairs. 55760 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:79,610,905
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 926793 as yet unmatched pairs. 25708 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:80,082,161
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 924933 as yet unmatched pairs. 23845 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:88,941,311
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 922586 as yet unmatched pairs. 21479 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:95,867,010
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 919146 as yet unmatched pairs. 18033 records in RAM.
INFO 2026-06-08 09:07:50 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:100,529,420
INFO 2026-06-08 09:07:50 MarkDuplicates Tracking 917458 as yet unmatched pairs. 16337 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:102,656,853
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 914478 as yet unmatched pairs. 13334 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:113,777,549
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 910286 as yet unmatched pairs. 9128 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr10:121,960,365
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 907713 as yet unmatched pairs. 6538 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:122,606,040
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 907318 as yet unmatched pairs. 6139 records in RAM.
INFO 2026-06-08 09:07:57 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr10:128,056,160
INFO 2026-06-08 09:07:57 MarkDuplicates Tracking 904128 as yet unmatched pairs. 2928 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr11:290,935
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 903452 as yet unmatched pairs. 138756 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:320,566
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 912889 as yet unmatched pairs. 148189 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:721,952
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 894823 as yet unmatched pairs. 130114 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:1,223,160
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 903246 as yet unmatched pairs. 138527 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 2s. Last read position: chr11:1,241,047
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 894872 as yet unmatched pairs. 130146 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,207
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 889665 as yet unmatched pairs. 124934 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,060
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 892069 as yet unmatched pairs. 127333 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,047
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 887451 as yet unmatched pairs. 122715 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,888
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 890467 as yet unmatched pairs. 125724 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,223
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 899883 as yet unmatched pairs. 135138 records in RAM.
INFO 2026-06-08 09:08:16 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,105
INFO 2026-06-08 09:08:16 MarkDuplicates Tracking 883969 as yet unmatched pairs. 119224 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,037
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 883763 as yet unmatched pairs. 119009 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,289
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 882633 as yet unmatched pairs. 117879 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:1,254,282
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 878380 as yet unmatched pairs. 113624 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:1,753,865
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 882275 as yet unmatched pairs. 117507 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:1,880,185
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 868107 as yet unmatched pairs. 103332 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:3,967,593
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 865157 as yet unmatched pairs. 100372 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:7,987,628
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 862987 as yet unmatched pairs. 98193 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:10,778,683
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 858135 as yet unmatched pairs. 93333 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:16,791,160
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 855582 as yet unmatched pairs. 90752 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:28,330,359
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 852594 as yet unmatched pairs. 87752 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:35,180,383
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 850504 as yet unmatched pairs. 85656 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:46,382,311
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 848969 as yet unmatched pairs. 84112 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:47,724,040
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 844220 as yet unmatched pairs. 79356 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr11:57,554,488
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 841253 as yet unmatched pairs. 76387 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:59,657,677
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 838533 as yet unmatched pairs. 73652 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:61,876,111
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 835838 as yet unmatched pairs. 70940 records in RAM.
INFO 2026-06-08 09:08:45 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:62,524,763
INFO 2026-06-08 09:08:45 MarkDuplicates Tracking 834220 as yet unmatched pairs. 69311 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:62,566,893
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 831609 as yet unmatched pairs. 66697 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:62,789,823
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 828082 as yet unmatched pairs. 63166 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:64,244,942
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 826903 as yet unmatched pairs. 61985 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:64,925,784
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 821093 as yet unmatched pairs. 56151 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:65,537,824
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 818436 as yet unmatched pairs. 53429 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,759
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 817577 as yet unmatched pairs. 52568 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:66,258,527
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 811098 as yet unmatched pairs. 46089 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:67,120,008
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 807874 as yet unmatched pairs. 42859 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:67,611,455
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 805431 as yet unmatched pairs. 40413 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 2s. Last read position: chr11:69,643,050
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 808088 as yet unmatched pairs. 43067 records in RAM.
INFO 2026-06-08 09:09:04 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:72,014,508
INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 798866 as yet unmatched pairs. 33843 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:73,310,210
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 795030 as yet unmatched pairs. 30001 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:75,441,267
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 791825 as yet unmatched pairs. 26784 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:85,983,949
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 789997 as yet unmatched pairs. 24941 records in RAM.
INFO 2026-06-08 09:09:11 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:96,341,609
INFO 2026-06-08 09:09:11 MarkDuplicates Tracking 787215 as yet unmatched pairs. 22147 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:108,474,797
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 783290 as yet unmatched pairs. 18204 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:114,253,544
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 781377 as yet unmatched pairs. 16288 records in RAM.
INFO 2026-06-08 09:09:16 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 2s. Last read position: chr11:118,407,011
INFO 2026-06-08 09:09:16 MarkDuplicates Tracking 783251 as yet unmatched pairs. 18160 records in RAM.
INFO 2026-06-08 09:09:18 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:118,908,640
INFO 2026-06-08 09:09:18 MarkDuplicates Tracking 775239 as yet unmatched pairs. 10143 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr11:121,590,145
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 772806 as yet unmatched pairs. 7686 records in RAM.
INFO 2026-06-08 09:09:22 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:126,266,586
INFO 2026-06-08 09:09:22 MarkDuplicates Tracking 769720 as yet unmatched pairs. 4596 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr11:130,878,481
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 766899 as yet unmatched pairs. 1762 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr12:885,634
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 764901 as yet unmatched pairs. 101075 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:6,019,337
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 763047 as yet unmatched pairs. 99201 records in RAM.
INFO 2026-06-08 09:09:29 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:6,537,101
INFO 2026-06-08 09:09:29 MarkDuplicates Tracking 759851 as yet unmatched pairs. 95998 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:6,936,508
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 756090 as yet unmatched pairs. 92223 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:7,097,119
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 752779 as yet unmatched pairs. 88907 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:9,089,946
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 753006 as yet unmatched pairs. 89127 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:11,869,694
INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 750270 as yet unmatched pairs. 86387 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:15,647,127
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 745722 as yet unmatched pairs. 81825 records in RAM.
INFO 2026-06-08 09:09:39 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:26,995,252
INFO 2026-06-08 09:09:39 MarkDuplicates Tracking 743128 as yet unmatched pairs. 79212 records in RAM.
INFO 2026-06-08 09:09:41 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:40,322,043
INFO 2026-06-08 09:09:41 MarkDuplicates Tracking 742425 as yet unmatched pairs. 78496 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:47,855,689
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 736896 as yet unmatched pairs. 72962 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,208
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 734911 as yet unmatched pairs. 70970 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:49,762,871
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 732175 as yet unmatched pairs. 68231 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,410
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 734432 as yet unmatched pairs. 70485 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:53,037,574
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 727505 as yet unmatched pairs. 63553 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:53,461,036
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 727314 as yet unmatched pairs. 63355 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:54,283,093
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 723229 as yet unmatched pairs. 59260 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:55,986,937
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 718252 as yet unmatched pairs. 54282 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:56,244,700
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 714751 as yet unmatched pairs. 50768 records in RAM.
INFO 2026-06-08 09:09:58 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr12:56,714,383
INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 725871 as yet unmatched pairs. 61887 records in RAM.
INFO 2026-06-08 09:10:00 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 2s. Last read position: chr12:57,099,882
INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 716521 as yet unmatched pairs. 52535 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 2s. Last read position: chr12:57,185,658
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 707725 as yet unmatched pairs. 43739 records in RAM.
INFO 2026-06-08 09:10:04 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:57,535,821
INFO 2026-06-08 09:10:04 MarkDuplicates Tracking 705236 as yet unmatched pairs. 41240 records in RAM.
INFO 2026-06-08 09:10:06 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:64,723,089
INFO 2026-06-08 09:10:06 MarkDuplicates Tracking 701747 as yet unmatched pairs. 37722 records in RAM.
INFO 2026-06-08 09:10:08 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:70,534,892
INFO 2026-06-08 09:10:08 MarkDuplicates Tracking 698672 as yet unmatched pairs. 34635 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:91,108,361
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 697392 as yet unmatched pairs. 33345 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:96,029,112
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 695328 as yet unmatched pairs. 31274 records in RAM.
INFO 2026-06-08 09:10:13 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:104,265,740
INFO 2026-06-08 09:10:13 MarkDuplicates Tracking 690350 as yet unmatched pairs. 26288 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr12:109,246,213
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 687611 as yet unmatched pairs. 23547 records in RAM.
INFO 2026-06-08 09:10:16 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:111,790,558
INFO 2026-06-08 09:10:16 MarkDuplicates Tracking 687383 as yet unmatched pairs. 23314 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:113,191,456
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 682190 as yet unmatched pairs. 18115 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr12:119,822,833
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 678629 as yet unmatched pairs. 14499 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr12:121,020,755
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 675704 as yet unmatched pairs. 11561 records in RAM.
INFO 2026-06-08 09:10:23 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr12:122,981,989
INFO 2026-06-08 09:10:23 MarkDuplicates Tracking 674581 as yet unmatched pairs. 10435 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 2s. Last read position: chr12:124,355,569
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 670944 as yet unmatched pairs. 6791 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:132,053,587
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 666989 as yet unmatched pairs. 2820 records in RAM.
INFO 2026-06-08 09:10:28 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr13:20,066,891
INFO 2026-06-08 09:10:28 MarkDuplicates Tracking 665091 as yet unmatched pairs. 24070 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr13:30,461,462
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 661115 as yet unmatched pairs. 20087 records in RAM.
INFO 2026-06-08 09:10:31 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr13:41,466,831
INFO 2026-06-08 09:10:31 MarkDuplicates Tracking 659432 as yet unmatched pairs. 18390 records in RAM.
INFO 2026-06-08 09:10:33 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr13:48,253,848
INFO 2026-06-08 09:10:33 MarkDuplicates Tracking 664164 as yet unmatched pairs. 23110 records in RAM.
INFO 2026-06-08 09:10:35 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr13:76,885,166
INFO 2026-06-08 09:10:35 MarkDuplicates Tracking 654180 as yet unmatched pairs. 13113 records in RAM.
INFO 2026-06-08 09:10:36 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr13:98,831,698
INFO 2026-06-08 09:10:36 MarkDuplicates Tracking 650630 as yet unmatched pairs. 9553 records in RAM.
INFO 2026-06-08 09:10:38 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr13:110,198,584
INFO 2026-06-08 09:10:38 MarkDuplicates Tracking 647949 as yet unmatched pairs. 6859 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr13:112,825,530
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 645368 as yet unmatched pairs. 4269 records in RAM.
INFO 2026-06-08 09:10:42 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr14:20,456,786
INFO 2026-06-08 09:10:42 MarkDuplicates Tracking 641463 as yet unmatched pairs. 53714 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr14:22,771,039
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 638330 as yet unmatched pairs. 50576 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:23,566,103
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 635255 as yet unmatched pairs. 47487 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:24,430,847
INFO 2026-06-08 09:10:46 MarkDuplicates Tracking 632134 as yet unmatched pairs. 44363 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr14:35,748,805
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 629187 as yet unmatched pairs. 41411 records in RAM.
INFO 2026-06-08 09:10:50 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:49,893,959
INFO 2026-06-08 09:10:50 MarkDuplicates Tracking 627823 as yet unmatched pairs. 39975 records in RAM.
INFO 2026-06-08 09:10:51 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr14:57,246,828
INFO 2026-06-08 09:10:51 MarkDuplicates Tracking 623869 as yet unmatched pairs. 36016 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr14:64,209,551
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 621034 as yet unmatched pairs. 33176 records in RAM.
INFO 2026-06-08 09:10:55 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr14:68,790,212
INFO 2026-06-08 09:10:55 MarkDuplicates Tracking 621607 as yet unmatched pairs. 33741 records in RAM.
INFO 2026-06-08 09:10:56 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr14:73,237,580
INFO 2026-06-08 09:10:56 MarkDuplicates Tracking 615972 as yet unmatched pairs. 28102 records in RAM.
INFO 2026-06-08 09:10:57 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr14:74,508,938
INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 615226 as yet unmatched pairs. 27345 records in RAM.
INFO 2026-06-08 09:10:59 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr14:75,280,860
INFO 2026-06-08 09:10:59 MarkDuplicates Tracking 613156 as yet unmatched pairs. 25274 records in RAM.
INFO 2026-06-08 09:11:01 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr14:90,259,194
INFO 2026-06-08 09:11:01 MarkDuplicates Tracking 606369 as yet unmatched pairs. 18486 records in RAM.
INFO 2026-06-08 09:11:02 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr14:94,115,903
INFO 2026-06-08 09:11:02 MarkDuplicates Tracking 605082 as yet unmatched pairs. 17193 records in RAM.
INFO 2026-06-08 09:11:04 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr14:100,298,856
INFO 2026-06-08 09:11:04 MarkDuplicates Tracking 600654 as yet unmatched pairs. 12758 records in RAM.
INFO 2026-06-08 09:11:05 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr14:102,938,169
INFO 2026-06-08 09:11:05 MarkDuplicates Tracking 597810 as yet unmatched pairs. 9907 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr14:104,775,128
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 594518 as yet unmatched pairs. 6603 records in RAM.
INFO 2026-06-08 09:11:09 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr14:105,211,171
INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 591483 as yet unmatched pairs. 3568 records in RAM.
INFO 2026-06-08 09:11:10 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,525
INFO 2026-06-08 09:11:10 MarkDuplicates Tracking 591954 as yet unmatched pairs. 4025 records in RAM.
INFO 2026-06-08 09:11:12 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:29,733,237
INFO 2026-06-08 09:11:12 MarkDuplicates Tracking 586372 as yet unmatched pairs. 44079 records in RAM.
INFO 2026-06-08 09:11:14 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:39,589,860
INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 584346 as yet unmatched pairs. 42041 records in RAM.
INFO 2026-06-08 09:11:16 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:41,710,820
INFO 2026-06-08 09:11:16 MarkDuplicates Tracking 580724 as yet unmatched pairs. 38418 records in RAM.
INFO 2026-06-08 09:11:17 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:43,528,445
INFO 2026-06-08 09:11:17 MarkDuplicates Tracking 577607 as yet unmatched pairs. 35300 records in RAM.
INFO 2026-06-08 09:11:19 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:45,676,194
INFO 2026-06-08 09:11:19 MarkDuplicates Tracking 575178 as yet unmatched pairs. 32865 records in RAM.
INFO 2026-06-08 09:11:21 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:52,610,293
INFO 2026-06-08 09:11:21 MarkDuplicates Tracking 572808 as yet unmatched pairs. 30483 records in RAM.
INFO 2026-06-08 09:11:22 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr15:60,364,492
INFO 2026-06-08 09:11:22 MarkDuplicates Tracking 571921 as yet unmatched pairs. 29592 records in RAM.
INFO 2026-06-08 09:11:24 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:64,675,678
INFO 2026-06-08 09:11:24 MarkDuplicates Tracking 567248 as yet unmatched pairs. 24915 records in RAM.
INFO 2026-06-08 09:11:26 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr15:68,320,326
INFO 2026-06-08 09:11:26 MarkDuplicates Tracking 564566 as yet unmatched pairs. 22226 records in RAM.
INFO 2026-06-08 09:11:28 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr15:73,298,397
INFO 2026-06-08 09:11:28 MarkDuplicates Tracking 561733 as yet unmatched pairs. 19382 records in RAM.
INFO 2026-06-08 09:11:29 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr15:74,448,531
INFO 2026-06-08 09:11:29 MarkDuplicates Tracking 558203 as yet unmatched pairs. 15852 records in RAM.
INFO 2026-06-08 09:11:31 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr15:77,054,190
INFO 2026-06-08 09:11:31 MarkDuplicates Tracking 556377 as yet unmatched pairs. 14019 records in RAM.
INFO 2026-06-08 09:11:33 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr15:82,372,432
INFO 2026-06-08 09:11:33 MarkDuplicates Tracking 554925 as yet unmatched pairs. 12561 records in RAM.
INFO 2026-06-08 09:11:34 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr15:85,693,437
INFO 2026-06-08 09:11:34 MarkDuplicates Tracking 551500 as yet unmatched pairs. 9133 records in RAM.
INFO 2026-06-08 09:11:36 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr15:90,084,269
INFO 2026-06-08 09:11:36 MarkDuplicates Tracking 547686 as yet unmatched pairs. 5313 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr15:93,072,901
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 544159 as yet unmatched pairs. 1783 records in RAM.
INFO 2026-06-08 09:11:40 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr16:400,249
INFO 2026-06-08 09:11:40 MarkDuplicates Tracking 542509 as yet unmatched pairs. 79681 records in RAM.
INFO 2026-06-08 09:11:41 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:1,241,267
INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 539009 as yet unmatched pairs. 76179 records in RAM.
INFO 2026-06-08 09:11:43 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:1,977,364
INFO 2026-06-08 09:11:43 MarkDuplicates Tracking 534023 as yet unmatched pairs. 71185 records in RAM.
INFO 2026-06-08 09:11:45 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:2,514,112
INFO 2026-06-08 09:11:45 MarkDuplicates Tracking 533762 as yet unmatched pairs. 70924 records in RAM.
INFO 2026-06-08 09:11:46 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:3,023,285
INFO 2026-06-08 09:11:46 MarkDuplicates Tracking 528661 as yet unmatched pairs. 65821 records in RAM.
INFO 2026-06-08 09:11:48 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:4,657,298
INFO 2026-06-08 09:11:48 MarkDuplicates Tracking 524884 as yet unmatched pairs. 62042 records in RAM.
INFO 2026-06-08 09:11:49 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:11,126,073
INFO 2026-06-08 09:11:49 MarkDuplicates Tracking 521300 as yet unmatched pairs. 58447 records in RAM.
INFO 2026-06-08 09:11:51 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:14,922,113
INFO 2026-06-08 09:11:51 MarkDuplicates Tracking 518554 as yet unmatched pairs. 55693 records in RAM.
INFO 2026-06-08 09:11:53 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:16,243,174
INFO 2026-06-08 09:11:53 MarkDuplicates Tracking 516203 as yet unmatched pairs. 53339 records in RAM.
INFO 2026-06-08 09:11:54 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:18,351,910
INFO 2026-06-08 09:11:54 MarkDuplicates Tracking 515638 as yet unmatched pairs. 52772 records in RAM.
INFO 2026-06-08 09:11:55 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:19,637,619
INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 513565 as yet unmatched pairs. 50699 records in RAM.
INFO 2026-06-08 09:11:57 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:21,879,444
INFO 2026-06-08 09:11:57 MarkDuplicates Tracking 511836 as yet unmatched pairs. 48970 records in RAM.
INFO 2026-06-08 09:11:59 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 2s. Last read position: chr16:23,679,101
INFO 2026-06-08 09:11:59 MarkDuplicates Tracking 510263 as yet unmatched pairs. 47397 records in RAM.
INFO 2026-06-08 09:12:00 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:28,714,347
INFO 2026-06-08 09:12:00 MarkDuplicates Tracking 507778 as yet unmatched pairs. 44905 records in RAM.
INFO 2026-06-08 09:12:02 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:29,483,919
INFO 2026-06-08 09:12:02 MarkDuplicates Tracking 507219 as yet unmatched pairs. 44346 records in RAM.
INFO 2026-06-08 09:12:03 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:30,000,927
INFO 2026-06-08 09:12:03 MarkDuplicates Tracking 503542 as yet unmatched pairs. 40661 records in RAM.
INFO 2026-06-08 09:12:04 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:30,445,393
INFO 2026-06-08 09:12:04 MarkDuplicates Tracking 501619 as yet unmatched pairs. 38733 records in RAM.
INFO 2026-06-08 09:12:06 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:31,081,246
INFO 2026-06-08 09:12:06 MarkDuplicates Tracking 497612 as yet unmatched pairs. 34725 records in RAM.
INFO 2026-06-08 09:12:08 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:31,492,035
INFO 2026-06-08 09:12:08 MarkDuplicates Tracking 494679 as yet unmatched pairs. 31785 records in RAM.
INFO 2026-06-08 09:12:09 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:54,932,849
INFO 2026-06-08 09:12:09 MarkDuplicates Tracking 491983 as yet unmatched pairs. 29084 records in RAM.
INFO 2026-06-08 09:12:11 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr16:56,943,250
INFO 2026-06-08 09:12:11 MarkDuplicates Tracking 488916 as yet unmatched pairs. 26017 records in RAM.
INFO 2026-06-08 09:12:13 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:64,948,020
INFO 2026-06-08 09:12:13 MarkDuplicates Tracking 487643 as yet unmatched pairs. 24741 records in RAM.
INFO 2026-06-08 09:12:14 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:67,438,647
INFO 2026-06-08 09:12:14 MarkDuplicates Tracking 482352 as yet unmatched pairs. 19448 records in RAM.
INFO 2026-06-08 09:12:16 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:69,114,556
INFO 2026-06-08 09:12:16 MarkDuplicates Tracking 479262 as yet unmatched pairs. 16356 records in RAM.
INFO 2026-06-08 09:12:17 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr16:70,664,638
INFO 2026-06-08 09:12:17 MarkDuplicates Tracking 476898 as yet unmatched pairs. 13987 records in RAM.
INFO 2026-06-08 09:12:19 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 2s. Last read position: chr16:72,958,107
INFO 2026-06-08 09:12:19 MarkDuplicates Tracking 474200 as yet unmatched pairs. 11280 records in RAM.
INFO 2026-06-08 09:12:21 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:84,054,596
INFO 2026-06-08 09:12:21 MarkDuplicates Tracking 471458 as yet unmatched pairs. 8532 records in RAM.
INFO 2026-06-08 09:12:23 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:88,643,300
INFO 2026-06-08 09:12:23 MarkDuplicates Tracking 469809 as yet unmatched pairs. 6881 records in RAM.
INFO 2026-06-08 09:12:25 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 2s. Last read position: chr16:89,561,599
INFO 2026-06-08 09:12:25 MarkDuplicates Tracking 472169 as yet unmatched pairs. 9237 records in RAM.
INFO 2026-06-08 09:12:28 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 3s. Last read position: chr17:1,361,995
INFO 2026-06-08 09:12:28 MarkDuplicates Tracking 468609 as yet unmatched pairs. 158217 records in RAM.
INFO 2026-06-08 09:12:30 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:1,728,060
INFO 2026-06-08 09:12:30 MarkDuplicates Tracking 459026 as yet unmatched pairs. 148631 records in RAM.
INFO 2026-06-08 09:12:31 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:4,076,926
INFO 2026-06-08 09:12:31 MarkDuplicates Tracking 455541 as yet unmatched pairs. 145139 records in RAM.
INFO 2026-06-08 09:12:33 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:5,020,587
INFO 2026-06-08 09:12:33 MarkDuplicates Tracking 452507 as yet unmatched pairs. 142104 records in RAM.
INFO 2026-06-08 09:12:35 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:7,311,110
INFO 2026-06-08 09:12:35 MarkDuplicates Tracking 450745 as yet unmatched pairs. 140341 records in RAM.
INFO 2026-06-08 09:12:36 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:7,566,957
INFO 2026-06-08 09:12:36 MarkDuplicates Tracking 446755 as yet unmatched pairs. 136351 records in RAM.
INFO 2026-06-08 09:12:38 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:8,039,225
INFO 2026-06-08 09:12:38 MarkDuplicates Tracking 444507 as yet unmatched pairs. 134103 records in RAM.
INFO 2026-06-08 09:12:40 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr17:8,888,293
INFO 2026-06-08 09:12:40 MarkDuplicates Tracking 440914 as yet unmatched pairs. 130506 records in RAM.
INFO 2026-06-08 09:12:41 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:17,142,722
INFO 2026-06-08 09:12:41 MarkDuplicates Tracking 438805 as yet unmatched pairs. 128387 records in RAM.
INFO 2026-06-08 09:12:43 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:18,246,970
INFO 2026-06-08 09:12:43 MarkDuplicates Tracking 434830 as yet unmatched pairs. 124408 records in RAM.
INFO 2026-06-08 09:12:45 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:27,640,617
INFO 2026-06-08 09:12:45 MarkDuplicates Tracking 433511 as yet unmatched pairs. 123089 records in RAM.
INFO 2026-06-08 09:12:46 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:28,912,955
INFO 2026-06-08 09:12:46 MarkDuplicates Tracking 429122 as yet unmatched pairs. 118695 records in RAM.
INFO 2026-06-08 09:12:48 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:31,937,467
INFO 2026-06-08 09:12:48 MarkDuplicates Tracking 426881 as yet unmatched pairs. 116450 records in RAM.
INFO 2026-06-08 09:12:50 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 2s. Last read position: chr17:35,844,934
INFO 2026-06-08 09:12:50 MarkDuplicates Tracking 423859 as yet unmatched pairs. 113421 records in RAM.
INFO 2026-06-08 09:12:52 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:38,715,899
INFO 2026-06-08 09:12:52 MarkDuplicates Tracking 421662 as yet unmatched pairs. 111223 records in RAM.
INFO 2026-06-08 09:12:53 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr17:39,661,054
INFO 2026-06-08 09:12:53 MarkDuplicates Tracking 418807 as yet unmatched pairs. 108365 records in RAM.
INFO 2026-06-08 09:12:55 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr17:39,904,792
INFO 2026-06-08 09:12:55 MarkDuplicates Tracking 415299 as yet unmatched pairs. 104847 records in RAM.
INFO 2026-06-08 09:12:56 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:41,769,037
INFO 2026-06-08 09:12:56 MarkDuplicates Tracking 412515 as yet unmatched pairs. 102061 records in RAM.
INFO 2026-06-08 09:12:58 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 2s. Last read position: chr17:42,592,056
INFO 2026-06-08 09:12:58 MarkDuplicates Tracking 409792 as yet unmatched pairs. 99333 records in RAM.
INFO 2026-06-08 09:15:15 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 136s. Last read position: chr17:44,178,230
INFO 2026-06-08 09:15:15 MarkDuplicates Tracking 406250 as yet unmatched pairs. 95788 records in RAM.
INFO 2026-06-08 09:15:17 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 2s. Last read position: chr17:45,518,930
INFO 2026-06-08 09:15:17 MarkDuplicates Tracking 403307 as yet unmatched pairs. 92840 records in RAM.
INFO 2026-06-08 09:15:20 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 2s. Last read position: chr17:48,071,398
INFO 2026-06-08 09:15:20 MarkDuplicates Tracking 401062 as yet unmatched pairs. 90585 records in RAM.
INFO 2026-06-08 09:15:21 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,890
INFO 2026-06-08 09:15:21 MarkDuplicates Tracking 408666 as yet unmatched pairs. 98187 records in RAM.
INFO 2026-06-08 09:15:23 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,025
INFO 2026-06-08 09:15:23 MarkDuplicates Tracking 458989 as yet unmatched pairs. 148510 records in RAM.
INFO 2026-06-08 09:15:25 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,953
INFO 2026-06-08 09:15:25 MarkDuplicates Tracking 466350 as yet unmatched pairs. 155871 records in RAM.
INFO 2026-06-08 09:15:27 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,784
INFO 2026-06-08 09:15:27 MarkDuplicates Tracking 462782 as yet unmatched pairs. 152301 records in RAM.
INFO 2026-06-08 09:15:30 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,462
INFO 2026-06-08 09:15:30 MarkDuplicates Tracking 433768 as yet unmatched pairs. 123285 records in RAM.
INFO 2026-06-08 09:15:32 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,064
INFO 2026-06-08 09:15:32 MarkDuplicates Tracking 455661 as yet unmatched pairs. 145177 records in RAM.
INFO 2026-06-08 09:15:34 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,428
INFO 2026-06-08 09:15:34 MarkDuplicates Tracking 435337 as yet unmatched pairs. 124853 records in RAM.
INFO 2026-06-08 09:15:36 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,662
INFO 2026-06-08 09:15:36 MarkDuplicates Tracking 448912 as yet unmatched pairs. 138421 records in RAM.
INFO 2026-06-08 09:15:37 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,982
INFO 2026-06-08 09:15:37 MarkDuplicates Tracking 448884 as yet unmatched pairs. 138392 records in RAM.
INFO 2026-06-08 09:15:39 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,576
INFO 2026-06-08 09:15:39 MarkDuplicates Tracking 426329 as yet unmatched pairs. 115837 records in RAM.
INFO 2026-06-08 09:15:41 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,275
INFO 2026-06-08 09:15:41 MarkDuplicates Tracking 434807 as yet unmatched pairs. 124315 records in RAM.
INFO 2026-06-08 09:15:43 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,951
INFO 2026-06-08 09:15:43 MarkDuplicates Tracking 421800 as yet unmatched pairs. 111304 records in RAM.
INFO 2026-06-08 09:15:45 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,504
INFO 2026-06-08 09:15:45 MarkDuplicates Tracking 435118 as yet unmatched pairs. 124619 records in RAM.
INFO 2026-06-08 09:15:46 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,757
INFO 2026-06-08 09:15:46 MarkDuplicates Tracking 419989 as yet unmatched pairs. 109488 records in RAM.
INFO 2026-06-08 09:15:48 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,315
INFO 2026-06-08 09:15:48 MarkDuplicates Tracking 383695 as yet unmatched pairs. 73184 records in RAM.
INFO 2026-06-08 09:15:50 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,659,280
INFO 2026-06-08 09:15:50 MarkDuplicates Tracking 351935 as yet unmatched pairs. 41415 records in RAM.
INFO 2026-06-08 09:15:52 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr17:58,083,582
INFO 2026-06-08 09:15:52 MarkDuplicates Tracking 348473 as yet unmatched pairs. 37951 records in RAM.
INFO 2026-06-08 09:15:53 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr17:59,682,761
INFO 2026-06-08 09:15:53 MarkDuplicates Tracking 350219 as yet unmatched pairs. 39688 records in RAM.
INFO 2026-06-08 09:15:55 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr17:63,314,437
INFO 2026-06-08 09:15:55 MarkDuplicates Tracking 343091 as yet unmatched pairs. 32557 records in RAM.
INFO 2026-06-08 09:15:57 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr17:64,504,725
INFO 2026-06-08 09:15:57 MarkDuplicates Tracking 340714 as yet unmatched pairs. 30173 records in RAM.
INFO 2026-06-08 09:15:59 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:68,528,925
INFO 2026-06-08 09:15:59 MarkDuplicates Tracking 338616 as yet unmatched pairs. 28072 records in RAM.
INFO 2026-06-08 09:16:01 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 2s. Last read position: chr17:75,231,574
INFO 2026-06-08 09:16:01 MarkDuplicates Tracking 334208 as yet unmatched pairs. 23662 records in RAM.
INFO 2026-06-08 09:16:03 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 2s. Last read position: chr17:75,836,399
INFO 2026-06-08 09:16:03 MarkDuplicates Tracking 331246 as yet unmatched pairs. 20698 records in RAM.
INFO 2026-06-08 09:16:05 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:77,402,406
INFO 2026-06-08 09:16:05 MarkDuplicates Tracking 328968 as yet unmatched pairs. 18419 records in RAM.
INFO 2026-06-08 09:16:06 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr17:78,979,757
INFO 2026-06-08 09:16:06 MarkDuplicates Tracking 324210 as yet unmatched pairs. 13660 records in RAM.
INFO 2026-06-08 09:16:08 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:81,057,921
INFO 2026-06-08 09:16:08 MarkDuplicates Tracking 321579 as yet unmatched pairs. 11027 records in RAM.
INFO 2026-06-08 09:16:10 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:81,690,675
INFO 2026-06-08 09:16:10 MarkDuplicates Tracking 318274 as yet unmatched pairs. 7714 records in RAM.
INFO 2026-06-08 09:16:11 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr17:82,059,977
INFO 2026-06-08 09:16:11 MarkDuplicates Tracking 315108 as yet unmatched pairs. 4547 records in RAM.
INFO 2026-06-08 09:16:13 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr17:82,750,641
INFO 2026-06-08 09:16:13 MarkDuplicates Tracking 311210 as yet unmatched pairs. 642 records in RAM.
INFO 2026-06-08 09:16:14 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr18:9,577,067
INFO 2026-06-08 09:16:14 MarkDuplicates Tracking 308615 as yet unmatched pairs. 10974 records in RAM.
INFO 2026-06-08 09:16:16 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 2s. Last read position: chr18:26,852,332
INFO 2026-06-08 09:16:16 MarkDuplicates Tracking 305823 as yet unmatched pairs. 8175 records in RAM.
INFO 2026-06-08 09:16:18 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr18:49,430,289
INFO 2026-06-08 09:16:18 MarkDuplicates Tracking 303447 as yet unmatched pairs. 5798 records in RAM.
INFO 2026-06-08 09:16:19 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr18:62,264,040
INFO 2026-06-08 09:16:19 MarkDuplicates Tracking 300824 as yet unmatched pairs. 3169 records in RAM.
INFO 2026-06-08 09:16:22 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 2s. Last read position: chr19:572,608
INFO 2026-06-08 09:16:22 MarkDuplicates Tracking 299116 as yet unmatched pairs. 138450 records in RAM.
INFO 2026-06-08 09:16:24 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr19:1,036,499
INFO 2026-06-08 09:16:24 MarkDuplicates Tracking 294652 as yet unmatched pairs. 133977 records in RAM.
INFO 2026-06-08 09:16:25 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:1,257,190
INFO 2026-06-08 09:16:25 MarkDuplicates Tracking 290234 as yet unmatched pairs. 129557 records in RAM.
INFO 2026-06-08 09:16:28 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 2s. Last read position: chr19:1,979,575
INFO 2026-06-08 09:16:28 MarkDuplicates Tracking 286459 as yet unmatched pairs. 125776 records in RAM.
INFO 2026-06-08 09:16:30 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 2s. Last read position: chr19:3,000,707
INFO 2026-06-08 09:16:30 MarkDuplicates Tracking 283486 as yet unmatched pairs. 122798 records in RAM.
INFO 2026-06-08 09:16:32 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:4,101,229
INFO 2026-06-08 09:16:32 MarkDuplicates Tracking 280435 as yet unmatched pairs. 119745 records in RAM.
INFO 2026-06-08 09:16:34 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:5,649,141
INFO 2026-06-08 09:16:34 MarkDuplicates Tracking 276752 as yet unmatched pairs. 116060 records in RAM.
INFO 2026-06-08 09:16:35 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:6,684,571
INFO 2026-06-08 09:16:35 MarkDuplicates Tracking 276396 as yet unmatched pairs. 115704 records in RAM.
INFO 2026-06-08 09:16:37 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:7,184,376
INFO 2026-06-08 09:16:37 MarkDuplicates Tracking 270130 as yet unmatched pairs. 109435 records in RAM.
INFO 2026-06-08 09:16:39 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 2s. Last read position: chr19:8,402,215
INFO 2026-06-08 09:16:39 MarkDuplicates Tracking 268128 as yet unmatched pairs. 107433 records in RAM.
INFO 2026-06-08 09:16:41 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:10,109,979
INFO 2026-06-08 09:16:41 MarkDuplicates Tracking 263764 as yet unmatched pairs. 103066 records in RAM.
INFO 2026-06-08 09:16:42 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:10,635,488
INFO 2026-06-08 09:16:42 MarkDuplicates Tracking 261132 as yet unmatched pairs. 100434 records in RAM.
INFO 2026-06-08 09:16:44 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:11,325,478
INFO 2026-06-08 09:16:44 MarkDuplicates Tracking 257707 as yet unmatched pairs. 97009 records in RAM.
INFO 2026-06-08 09:16:46 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:12,734,429
INFO 2026-06-08 09:16:46 MarkDuplicates Tracking 255581 as yet unmatched pairs. 94882 records in RAM.
INFO 2026-06-08 09:16:47 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:13,762,422
INFO 2026-06-08 09:16:47 MarkDuplicates Tracking 250922 as yet unmatched pairs. 90221 records in RAM.
INFO 2026-06-08 09:16:49 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:14,478,434
INFO 2026-06-08 09:16:49 MarkDuplicates Tracking 248310 as yet unmatched pairs. 87609 records in RAM.
INFO 2026-06-08 09:16:50 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr19:15,192,470
INFO 2026-06-08 09:16:50 MarkDuplicates Tracking 245295 as yet unmatched pairs. 84594 records in RAM.
INFO 2026-06-08 09:16:52 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 2s. Last read position: chr19:16,325,591
INFO 2026-06-08 09:16:52 MarkDuplicates Tracking 241040 as yet unmatched pairs. 80338 records in RAM.
INFO 2026-06-08 09:16:54 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:17,726,198
INFO 2026-06-08 09:16:54 MarkDuplicates Tracking 237710 as yet unmatched pairs. 77006 records in RAM.
INFO 2026-06-08 09:16:57 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 2s. Last read position: chr19:18,432,014
INFO 2026-06-08 09:16:57 MarkDuplicates Tracking 235679 as yet unmatched pairs. 74974 records in RAM.
INFO 2026-06-08 09:16:59 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 2s. Last read position: chr19:19,199,196
INFO 2026-06-08 09:16:59 MarkDuplicates Tracking 231281 as yet unmatched pairs. 70576 records in RAM.
INFO 2026-06-08 09:17:00 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:34,342,033
INFO 2026-06-08 09:17:00 MarkDuplicates Tracking 227839 as yet unmatched pairs. 67134 records in RAM.
INFO 2026-06-08 09:17:02 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:35,721,053
INFO 2026-06-08 09:17:02 MarkDuplicates Tracking 224675 as yet unmatched pairs. 63970 records in RAM.
INFO 2026-06-08 09:17:04 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr19:38,291,860
INFO 2026-06-08 09:17:04 MarkDuplicates Tracking 222729 as yet unmatched pairs. 62015 records in RAM.
INFO 2026-06-08 09:17:06 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:39,390,079
INFO 2026-06-08 09:17:06 MarkDuplicates Tracking 218515 as yet unmatched pairs. 57801 records in RAM.
INFO 2026-06-08 09:17:08 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:39,474,689
INFO 2026-06-08 09:17:08 MarkDuplicates Tracking 215283 as yet unmatched pairs. 54561 records in RAM.
INFO 2026-06-08 09:17:09 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:40,235,997
INFO 2026-06-08 09:17:09 MarkDuplicates Tracking 213423 as yet unmatched pairs. 52699 records in RAM.
INFO 2026-06-08 09:17:11 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:40,627,757
INFO 2026-06-08 09:17:11 MarkDuplicates Tracking 212346 as yet unmatched pairs. 51619 records in RAM.
INFO 2026-06-08 09:17:13 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:41,869,136
INFO 2026-06-08 09:17:13 MarkDuplicates Tracking 209113 as yet unmatched pairs. 48386 records in RAM.
INFO 2026-06-08 09:17:15 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 2s. Last read position: chr19:42,287,563
INFO 2026-06-08 09:17:15 MarkDuplicates Tracking 203770 as yet unmatched pairs. 43037 records in RAM.
INFO 2026-06-08 09:17:17 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:43,780,789
INFO 2026-06-08 09:17:17 MarkDuplicates Tracking 198942 as yet unmatched pairs. 38200 records in RAM.
INFO 2026-06-08 09:17:19 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:44,990,472
INFO 2026-06-08 09:17:19 MarkDuplicates Tracking 195733 as yet unmatched pairs. 34991 records in RAM.
INFO 2026-06-08 09:17:21 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 2s. Last read position: chr19:45,835,172
INFO 2026-06-08 09:17:21 MarkDuplicates Tracking 192821 as yet unmatched pairs. 32079 records in RAM.
INFO 2026-06-08 09:17:23 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 2s. Last read position: chr19:47,609,152
INFO 2026-06-08 09:17:23 MarkDuplicates Tracking 188510 as yet unmatched pairs. 27768 records in RAM.
INFO 2026-06-08 09:17:25 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:48,739,410
INFO 2026-06-08 09:17:25 MarkDuplicates Tracking 185007 as yet unmatched pairs. 24264 records in RAM.
INFO 2026-06-08 09:17:28 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 2s. Last read position: chr19:49,489,900
INFO 2026-06-08 09:17:28 MarkDuplicates Tracking 195534 as yet unmatched pairs. 34791 records in RAM.
INFO 2026-06-08 09:17:30 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 2s. Last read position: chr19:49,661,823
INFO 2026-06-08 09:17:30 MarkDuplicates Tracking 179403 as yet unmatched pairs. 18659 records in RAM.
INFO 2026-06-08 09:17:32 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:50,358,725
INFO 2026-06-08 09:17:32 MarkDuplicates Tracking 178574 as yet unmatched pairs. 17822 records in RAM.
INFO 2026-06-08 09:17:33 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:51,896,518
INFO 2026-06-08 09:17:33 MarkDuplicates Tracking 172545 as yet unmatched pairs. 11787 records in RAM.
INFO 2026-06-08 09:17:35 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr19:54,254,961
INFO 2026-06-08 09:17:35 MarkDuplicates Tracking 169908 as yet unmatched pairs. 9143 records in RAM.
INFO 2026-06-08 09:17:37 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr19:55,483,710
INFO 2026-06-08 09:17:37 MarkDuplicates Tracking 166783 as yet unmatched pairs. 6016 records in RAM.
INFO 2026-06-08 09:17:39 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr19:57,859,646
INFO 2026-06-08 09:17:39 MarkDuplicates Tracking 163443 as yet unmatched pairs. 2670 records in RAM.
INFO 2026-06-08 09:17:41 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 2s. Last read position: chr20:1,135,193
INFO 2026-06-08 09:17:41 MarkDuplicates Tracking 160232 as yet unmatched pairs. 38895 records in RAM.
INFO 2026-06-08 09:17:44 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chr20:3,786,045
INFO 2026-06-08 09:17:44 MarkDuplicates Tracking 157582 as yet unmatched pairs. 36245 records in RAM.
INFO 2026-06-08 09:17:46 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr20:17,641,905
INFO 2026-06-08 09:17:46 MarkDuplicates Tracking 154594 as yet unmatched pairs. 33257 records in RAM.
INFO 2026-06-08 09:17:47 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr20:23,985,744
INFO 2026-06-08 09:17:47 MarkDuplicates Tracking 151683 as yet unmatched pairs. 30346 records in RAM.
INFO 2026-06-08 09:17:49 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr20:34,073,577
INFO 2026-06-08 09:17:49 MarkDuplicates Tracking 148238 as yet unmatched pairs. 26901 records in RAM.
INFO 2026-06-08 09:17:51 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr20:35,742,025
INFO 2026-06-08 09:17:51 MarkDuplicates Tracking 144840 as yet unmatched pairs. 23502 records in RAM.
INFO 2026-06-08 09:17:53 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr20:38,771,687
INFO 2026-06-08 09:17:53 MarkDuplicates Tracking 141629 as yet unmatched pairs. 20287 records in RAM.
INFO 2026-06-08 09:17:55 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr20:45,330,438
INFO 2026-06-08 09:17:55 MarkDuplicates Tracking 147455 as yet unmatched pairs. 26110 records in RAM.
INFO 2026-06-08 09:17:57 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr20:46,013,376
INFO 2026-06-08 09:17:57 MarkDuplicates Tracking 136579 as yet unmatched pairs. 15234 records in RAM.
INFO 2026-06-08 09:17:59 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr20:50,891,425
INFO 2026-06-08 09:17:59 MarkDuplicates Tracking 133268 as yet unmatched pairs. 11919 records in RAM.
INFO 2026-06-08 09:18:01 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr20:58,910,028
INFO 2026-06-08 09:18:01 MarkDuplicates Tracking 132496 as yet unmatched pairs. 11146 records in RAM.
INFO 2026-06-08 09:18:03 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr20:62,656,601
INFO 2026-06-08 09:18:03 MarkDuplicates Tracking 126305 as yet unmatched pairs. 4953 records in RAM.
INFO 2026-06-08 09:18:05 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 2s. Last read position: chr20:63,862,247
INFO 2026-06-08 09:18:05 MarkDuplicates Tracking 122498 as yet unmatched pairs. 1141 records in RAM.
INFO 2026-06-08 09:18:07 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,384
INFO 2026-06-08 09:18:07 MarkDuplicates Tracking 119694 as yet unmatched pairs. 22272 records in RAM.
INFO 2026-06-08 09:18:08 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr21:21,477,386
INFO 2026-06-08 09:18:08 MarkDuplicates Tracking 118033 as yet unmatched pairs. 20610 records in RAM.
INFO 2026-06-08 09:18:10 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr21:32,609,841
INFO 2026-06-08 09:18:10 MarkDuplicates Tracking 115219 as yet unmatched pairs. 17793 records in RAM.
INFO 2026-06-08 09:18:12 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr21:36,070,376
INFO 2026-06-08 09:18:12 MarkDuplicates Tracking 112359 as yet unmatched pairs. 14929 records in RAM.
INFO 2026-06-08 09:18:14 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr21:41,756,620
INFO 2026-06-08 09:18:14 MarkDuplicates Tracking 109003 as yet unmatched pairs. 11573 records in RAM.
INFO 2026-06-08 09:18:15 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr21:44,777,344
INFO 2026-06-08 09:18:15 MarkDuplicates Tracking 107450 as yet unmatched pairs. 10020 records in RAM.
INFO 2026-06-08 09:18:17 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr21:45,512,238
INFO 2026-06-08 09:18:17 MarkDuplicates Tracking 104419 as yet unmatched pairs. 6989 records in RAM.
INFO 2026-06-08 09:18:19 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr21:46,124,696
INFO 2026-06-08 09:18:19 MarkDuplicates Tracking 102844 as yet unmatched pairs. 5414 records in RAM.
INFO 2026-06-08 09:18:21 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 2s. Last read position: chr22:19,041,067
INFO 2026-06-08 09:18:21 MarkDuplicates Tracking 96356 as yet unmatched pairs. 44544 records in RAM.
INFO 2026-06-08 09:18:23 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 2s. Last read position: chr22:20,918,182
INFO 2026-06-08 09:18:23 MarkDuplicates Tracking 93264 as yet unmatched pairs. 41452 records in RAM.
INFO 2026-06-08 09:18:25 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr22:23,767,431
INFO 2026-06-08 09:18:25 MarkDuplicates Tracking 90004 as yet unmatched pairs. 38192 records in RAM.
INFO 2026-06-08 09:18:27 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr22:26,453,385
INFO 2026-06-08 09:18:27 MarkDuplicates Tracking 86076 as yet unmatched pairs. 34264 records in RAM.
INFO 2026-06-08 09:18:29 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr22:29,311,506
INFO 2026-06-08 09:18:29 MarkDuplicates Tracking 83158 as yet unmatched pairs. 31346 records in RAM.
INFO 2026-06-08 09:18:30 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr22:31,650,699
INFO 2026-06-08 09:18:30 MarkDuplicates Tracking 79947 as yet unmatched pairs. 28135 records in RAM.
INFO 2026-06-08 09:18:32 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,724
INFO 2026-06-08 09:18:32 MarkDuplicates Tracking 78082 as yet unmatched pairs. 26270 records in RAM.
INFO 2026-06-08 09:18:34 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr22:37,491,809
INFO 2026-06-08 09:18:34 MarkDuplicates Tracking 74003 as yet unmatched pairs. 22191 records in RAM.
INFO 2026-06-08 09:18:36 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr22:38,505,953
INFO 2026-06-08 09:18:36 MarkDuplicates Tracking 72705 as yet unmatched pairs. 20884 records in RAM.
INFO 2026-06-08 09:18:37 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr22:40,826,576
INFO 2026-06-08 09:18:37 MarkDuplicates Tracking 68843 as yet unmatched pairs. 17022 records in RAM.
INFO 2026-06-08 09:18:39 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr22:42,086,236
INFO 2026-06-08 09:18:39 MarkDuplicates Tracking 66233 as yet unmatched pairs. 14411 records in RAM.
INFO 2026-06-08 09:18:41 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr22:45,563,210
INFO 2026-06-08 09:18:41 MarkDuplicates Tracking 63053 as yet unmatched pairs. 11231 records in RAM.
INFO 2026-06-08 09:18:43 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chr22:50,245,699
INFO 2026-06-08 09:18:43 MarkDuplicates Tracking 58596 as yet unmatched pairs. 6774 records in RAM.
INFO 2026-06-08 09:18:45 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr22:50,525,758
INFO 2026-06-08 09:18:45 MarkDuplicates Tracking 57405 as yet unmatched pairs. 5583 records in RAM.
INFO 2026-06-08 09:18:47 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 2s. Last read position: chrX:2,740,778
INFO 2026-06-08 09:18:47 MarkDuplicates Tracking 53207 as yet unmatched pairs. 48477 records in RAM.
INFO 2026-06-08 09:18:49 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 2s. Last read position: chrX:15,845,917
INFO 2026-06-08 09:18:49 MarkDuplicates Tracking 47980 as yet unmatched pairs. 43250 records in RAM.
INFO 2026-06-08 09:18:52 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 2s. Last read position: chrX:38,160,171
INFO 2026-06-08 09:18:52 MarkDuplicates Tracking 45176 as yet unmatched pairs. 40443 records in RAM.
INFO 2026-06-08 09:18:53 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chrX:47,181,780
INFO 2026-06-08 09:18:53 MarkDuplicates Tracking 42441 as yet unmatched pairs. 37708 records in RAM.
INFO 2026-06-08 09:18:55 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chrX:49,030,201
INFO 2026-06-08 09:18:55 MarkDuplicates Tracking 41160 as yet unmatched pairs. 36427 records in RAM.
INFO 2026-06-08 09:18:57 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chrX:53,236,395
INFO 2026-06-08 09:18:57 MarkDuplicates Tracking 36780 as yet unmatched pairs. 32047 records in RAM.
INFO 2026-06-08 09:18:59 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chrX:65,667,830
INFO 2026-06-08 09:18:59 MarkDuplicates Tracking 37065 as yet unmatched pairs. 32332 records in RAM.
INFO 2026-06-08 09:19:01 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chrX:71,297,410
INFO 2026-06-08 09:19:01 MarkDuplicates Tracking 33205 as yet unmatched pairs. 28472 records in RAM.
INFO 2026-06-08 09:19:03 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 2s. Last read position: chrX:77,521,423
INFO 2026-06-08 09:19:03 MarkDuplicates Tracking 31136 as yet unmatched pairs. 26403 records in RAM.
INFO 2026-06-08 09:19:05 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chrX:100,676,175
INFO 2026-06-08 09:19:05 MarkDuplicates Tracking 26381 as yet unmatched pairs. 21647 records in RAM.
INFO 2026-06-08 09:19:07 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chrX:107,714,689
INFO 2026-06-08 09:19:07 MarkDuplicates Tracking 28405 as yet unmatched pairs. 23671 records in RAM.
INFO 2026-06-08 09:19:09 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chrX:119,591,262
INFO 2026-06-08 09:19:09 MarkDuplicates Tracking 21261 as yet unmatched pairs. 16527 records in RAM.
INFO 2026-06-08 09:19:12 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 2s. Last read position: chrX:132,214,350
INFO 2026-06-08 09:19:12 MarkDuplicates Tracking 18908 as yet unmatched pairs. 14174 records in RAM.
INFO 2026-06-08 09:19:14 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chrX:153,074,052
INFO 2026-06-08 09:19:14 MarkDuplicates Tracking 16029 as yet unmatched pairs. 11295 records in RAM.
INFO 2026-06-08 09:19:16 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 2s. Last read position: chrX:153,959,455
INFO 2026-06-08 09:19:16 MarkDuplicates Tracking 13681 as yet unmatched pairs. 8947 records in RAM.
INFO 2026-06-08 09:19:18 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 2s. Last read position: chrX:154,360,356
INFO 2026-06-08 09:19:18 MarkDuplicates Tracking 14353 as yet unmatched pairs. 9619 records in RAM.
INFO 2026-06-08 09:19:20 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 2s. Last read position: chrX:154,440,076
INFO 2026-06-08 09:19:20 MarkDuplicates Tracking 7114 as yet unmatched pairs. 2380 records in RAM.
INFO 2026-06-08 09:19:23 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 2s. Last read position: chrY:13,358,500
INFO 2026-06-08 09:19:23 MarkDuplicates Tracking 4264 as yet unmatched pairs. 542 records in RAM.
INFO 2026-06-08 09:19:24 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,350
INFO 2026-06-08 09:19:24 MarkDuplicates Tracking 1209 as yet unmatched pairs. 1122 records in RAM.
INFO 2026-06-08 09:19:25 MarkDuplicates Read 626518619 records. 0 pairs never matched.
INFO 2026-06-08 09:20:23 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141928; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:20:23 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:20:27 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:20:27 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:20:48 OpticalDuplicateFinder Large duplicate set. size = 1580
INFO 2026-06-08 09:20:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,944
INFO 2026-06-08 09:20:48 OpticalDuplicateFinder Large duplicate set. size = 1588
INFO 2026-06-08 09:20:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,976
INFO 2026-06-08 09:20:48 OpticalDuplicateFinder Large duplicate set. size = 1288
INFO 2026-06-08 09:20:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,702
INFO 2026-06-08 09:20:48 OpticalDuplicateFinder Large duplicate set. size = 1135
INFO 2026-06-08 09:20:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,280
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder Large duplicate set. size = 1260
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,951
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder Large duplicate set. size = 1244
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,027
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder Large duplicate set. size = 1445
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,118
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder Large duplicate set. size = 1242
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,188
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,366
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder Large duplicate set. size = 1477
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,742
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder Large duplicate set. size = 1773
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,184
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder Large duplicate set. size = 1914
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,035
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder Large duplicate set. size = 1547
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,020
INFO 2026-06-08 09:20:49 OpticalDuplicateFinder Large duplicate set. size = 1328
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,343
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder Large duplicate set. size = 2773
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,006
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,989
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder Large duplicate set. size = 1484
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,170
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder Large duplicate set. size = 1772
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,527
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder Large duplicate set. size = 1139
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,917
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder Large duplicate set. size = 1082
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,259
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder Large duplicate set. size = 1269
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,018
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,672
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 09:20:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,134
INFO 2026-06-08 09:20:55 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 09:20:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,301
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1545
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,238
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1221
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,934
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,366
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 3681
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,266
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,633
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,282
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1636
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,876
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 2160
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,372
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,784
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 2461
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,914
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,797
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1952
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,220
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1133
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,047
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1464
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,718
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,100
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1606
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,290
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1183
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,036
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1115
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,233
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1255
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,738
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1066
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,262
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1445
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,368
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1227
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,450
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,558
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder Large duplicate set. size = 1072
INFO 2026-06-08 09:20:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,878
INFO 2026-06-08 09:21:12 OpticalDuplicateFinder Large duplicate set. size = 1821
INFO 2026-06-08 09:21:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,116
INFO 2026-06-08 09:21:57 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 09:21:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,979
INFO 2026-06-08 09:21:57 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-08 09:21:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,312
INFO 2026-06-08 09:21:57 OpticalDuplicateFinder Large duplicate set. size = 1273
INFO 2026-06-08 09:21:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,016
INFO 2026-06-08 09:21:57 OpticalDuplicateFinder Large duplicate set. size = 1721
INFO 2026-06-08 09:21:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,938
INFO 2026-06-08 09:21:58 OpticalDuplicateFinder Large duplicate set. size = 1271
INFO 2026-06-08 09:21:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,125
INFO 2026-06-08 09:21:59 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:21:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,999
INFO 2026-06-08 09:21:59 OpticalDuplicateFinder Large duplicate set. size = 1308
INFO 2026-06-08 09:21:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,326
INFO 2026-06-08 09:21:59 OpticalDuplicateFinder Large duplicate set. size = 1338
INFO 2026-06-08 09:21:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,777
INFO 2026-06-08 09:21:59 OpticalDuplicateFinder Large duplicate set. size = 1916
INFO 2026-06-08 09:21:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,320
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder Large duplicate set. size = 1197
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,580
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,530
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder Large duplicate set. size = 1655
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,716
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,260
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder Large duplicate set. size = 1006
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,619
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder Large duplicate set. size = 2035
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,955
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,302
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,989
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder Large duplicate set. size = 1104
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,977
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 09:22:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,475
INFO 2026-06-08 09:22:18 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:22:18 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:23:30 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:23:35 MarkDuplicates After generateDuplicateIndexes freeMemory: 203930288; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:23:35 MarkDuplicates Marking 344364935 records as duplicates.
INFO 2026-06-08 09:23:35 MarkDuplicates Found 15799126 optical duplicate clusters.
INFO 2026-06-08 09:23:35 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:23:54 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:18s. Time for last 10,000,000: 18s. Last read position: chr1:23,337,761
INFO 2026-06-08 09:24:11 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:36s. Time for last 10,000,000: 17s. Last read position: chr1:47,219,011
INFO 2026-06-08 09:24:29 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:53s. Time for last 10,000,000: 17s. Last read position: chr1:146,156,461
INFO 2026-06-08 09:24:46 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:10s. Time for last 10,000,000: 17s. Last read position: chr1:155,346,468
INFO 2026-06-08 09:25:03 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:28s. Time for last 10,000,000: 17s. Last read position: chr1:186,336,568
INFO 2026-06-08 09:25:21 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:45s. Time for last 10,000,000: 17s. Last read position: chr1:228,743,282
INFO 2026-06-08 09:25:37 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:01s. Time for last 10,000,000: 16s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:25:53 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:17s. Time for last 10,000,000: 15s. Last read position: chr2:85,663,706
INFO 2026-06-08 09:26:09 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:34s. Time for last 10,000,000: 16s. Last read position: chr2:177,219,143
INFO 2026-06-08 09:26:25 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:50s. Time for last 10,000,000: 16s. Last read position: chr2:215,406,252
INFO 2026-06-08 09:26:41 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:05s. Time for last 10,000,000: 15s. Last read position: chr3:9,450,254
INFO 2026-06-08 09:26:56 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:21s. Time for last 10,000,000: 15s. Last read position: chr3:51,993,707
INFO 2026-06-08 09:27:12 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:37s. Time for last 10,000,000: 15s. Last read position: chr3:143,028,333
INFO 2026-06-08 09:27:28 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:52s. Time for last 10,000,000: 15s. Last read position: chr4:3,187,815
INFO 2026-06-08 09:27:42 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:07s. Time for last 10,000,000: 14s. Last read position: chr4:39,103,288
INFO 2026-06-08 09:27:58 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:23s. Time for last 10,000,000: 15s. Last read position: chr4:151,102,999
INFO 2026-06-08 09:28:14 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:38s. Time for last 10,000,000: 15s. Last read position: chr5:69,419,437
INFO 2026-06-08 09:28:29 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:54s. Time for last 10,000,000: 15s. Last read position: chr5:140,647,296
INFO 2026-06-08 09:28:44 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:09s. Time for last 10,000,000: 15s. Last read position: chr5:151,664,225
INFO 2026-06-08 09:29:00 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:24s. Time for last 10,000,000: 15s. Last read position: chr5:181,238,181
INFO 2026-06-08 09:29:15 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:39s. Time for last 10,000,000: 15s. Last read position: chr6:32,056,703
INFO 2026-06-08 09:29:31 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:56s. Time for last 10,000,000: 16s. Last read position: chr6:89,080,838
INFO 2026-06-08 09:29:48 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:13s. Time for last 10,000,000: 16s. Last read position: chr7:5,528,041
INFO 2026-06-08 09:30:04 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:29s. Time for last 10,000,000: 16s. Last read position: chr7:76,302,841
INFO 2026-06-08 09:30:21 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:45s. Time for last 10,000,000: 16s. Last read position: chr7:128,479,176
INFO 2026-06-08 09:30:37 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:01s. Time for last 10,000,000: 16s. Last read position: chr8:28,113,018
INFO 2026-06-08 09:30:55 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:20s. Time for last 10,000,000: 18s. Last read position: chr8:123,253,717
INFO 2026-06-08 09:31:13 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:37s. Time for last 10,000,000: 17s. Last read position: chr9:35,072,337
INFO 2026-06-08 09:31:30 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:55s. Time for last 10,000,000: 17s. Last read position: chr9:127,872,821
INFO 2026-06-08 09:31:47 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:12s. Time for last 10,000,000: 17s. Last read position: chr10:30,027,526
INFO 2026-06-08 09:32:04 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:29s. Time for last 10,000,000: 17s. Last read position: chr10:88,941,311
INFO 2026-06-08 09:32:21 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:46s. Time for last 10,000,000: 16s. Last read position: chr11:721,952
INFO 2026-06-08 09:32:37 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:02s. Time for last 10,000,000: 16s. Last read position: chr11:1,250,289
INFO 2026-06-08 09:32:54 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:19s. Time for last 10,000,000: 16s. Last read position: chr11:46,382,311
INFO 2026-06-08 09:33:10 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:34s. Time for last 10,000,000: 15s. Last read position: chr11:65,537,824
INFO 2026-06-08 09:33:25 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:50s. Time for last 10,000,000: 15s. Last read position: chr11:96,341,609
INFO 2026-06-08 09:33:41 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:06s. Time for last 10,000,000: 15s. Last read position: chr12:6,537,101
INFO 2026-06-08 09:33:57 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:21s. Time for last 10,000,000: 15s. Last read position: chr12:49,762,871
INFO 2026-06-08 09:34:12 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:37s. Time for last 10,000,000: 15s. Last read position: chr12:57,535,821
INFO 2026-06-08 09:34:28 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:52s. Time for last 10,000,000: 15s. Last read position: chr12:121,020,755
INFO 2026-06-08 09:34:43 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:07s. Time for last 10,000,000: 15s. Last read position: chr13:110,198,584
INFO 2026-06-08 09:34:58 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:23s. Time for last 10,000,000: 15s. Last read position: chr14:68,790,212
INFO 2026-06-08 09:35:14 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:38s. Time for last 10,000,000: 15s. Last read position: chr14:105,854,525
INFO 2026-06-08 09:35:30 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:54s. Time for last 10,000,000: 15s. Last read position: chr15:73,298,397
INFO 2026-06-08 09:35:45 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:09s. Time for last 10,000,000: 15s. Last read position: chr16:2,514,112
INFO 2026-06-08 09:36:00 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 15s. Last read position: chr16:28,714,347
INFO 2026-06-08 09:36:16 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:40s. Time for last 10,000,000: 15s. Last read position: chr16:69,114,556
INFO 2026-06-08 09:36:32 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:56s. Time for last 10,000,000: 15s. Last read position: chr17:7,311,110
INFO 2026-06-08 09:36:47 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:11s. Time for last 10,000,000: 15s. Last read position: chr17:38,715,899
INFO 2026-06-08 09:37:03 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:27s. Time for last 10,000,000: 15s. Last read position: chr17:50,187,953
INFO 2026-06-08 09:37:19 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:43s. Time for last 10,000,000: 16s. Last read position: chr17:50,196,504
INFO 2026-06-08 09:37:35 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:59s. Time for last 10,000,000: 15s. Last read position: chr17:75,836,399
INFO 2026-06-08 09:37:51 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:15s. Time for last 10,000,000: 16s. Last read position: chr18:62,264,040
INFO 2026-06-08 09:38:07 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:31s. Time for last 10,000,000: 15s. Last read position: chr19:8,402,215
INFO 2026-06-08 09:38:22 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:46s. Time for last 10,000,000: 15s. Last read position: chr19:18,432,014
INFO 2026-06-08 09:38:37 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:02s. Time for last 10,000,000: 15s. Last read position: chr19:42,287,563
INFO 2026-06-08 09:38:53 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:18s. Time for last 10,000,000: 15s. Last read position: chr19:54,254,961
INFO 2026-06-08 09:39:09 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:33s. Time for last 10,000,000: 15s. Last read position: chr20:45,330,438
INFO 2026-06-08 09:39:24 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:49s. Time for last 10,000,000: 15s. Last read position: chr21:41,756,620
INFO 2026-06-08 09:39:40 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:04s. Time for last 10,000,000: 15s. Last read position: chr22:36,288,724
INFO 2026-06-08 09:39:55 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:20s. Time for last 10,000,000: 15s. Last read position: chrX:38,160,171
INFO 2026-06-08 09:40:11 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:36s. Time for last 10,000,000: 16s. Last read position: chrX:132,214,350
INFO 2026-06-08 09:40:30 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:55s. Time for last 10,000,000: 18s. Last read position: */*
INFO 2026-06-08 09:40:31 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:40:31 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:40:31 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:40:31 MarkDuplicates Before output close freeMemory: 203875152; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:40:31 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:40:31 MarkDuplicates After output close freeMemory: 104128952; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:40:31 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.98 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory