Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/46df6d94ab40e2fe3e0cd79c4ae49e/659_bTo-T1-TRNA-1_A23MVY2LT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-bba2394f-ea06-4038-829e-f0bb41c45b0f/67/1d6e211d8f66f1c89f8ec9083ff96d/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/7e57e161ebfe9f2ad6cf3a92c32f2f/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/7e57e161ebfe9f2ad6cf3a92c32f2f/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/dfff5a94e3d435661b822965f6c668/659_bTo-T1-TRNA-1_A23MVY2LT4_2.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
ETV6--RASA3
starfusion
arriba
ANKRD46--STK3
starfusion
arriba
FHOD3--KIAA1328
starfusion
arriba
UBE2O--AANAT
starfusion
arriba
RIOK3--LINC01894
starfusion
arriba
ARPC3--LINC02827
starfusion
ACTBP6--ACTB
starfusion
UST--TMTC2
starfusion
TLK2--AC240565.1
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
NR2F6--CILP2
arriba
LANCL2--LANCL2
arriba
AKAP12--PHBP1
arriba
AKAP12--ULBP3
arriba
AC092807.3--DDAH1
arriba
TAF4B--B4GALT6
arriba
0%| | 0/25 [00:00<?, ?it/s]
Processing ETV6--RASA3: 0%| | 0/25 [00:00<?, ?it/s]
Processing ETV6--RASA3: 4%|▍ | 1/25 [00:00<00:02, 9.21it/s]
Processing ANKRD46--STK3: 4%|▍ | 1/25 [00:00<00:02, 9.21it/s]
Processing ANKRD46--STK3: 8%|▊ | 2/25 [00:00<00:02, 9.45it/s]
Processing FHOD3--KIAA1328: 8%|▊ | 2/25 [00:00<00:02, 9.45it/s]
Processing FHOD3--KIAA1328: 12%|█▏ | 3/25 [00:00<00:02, 9.53it/s]
Processing UBE2O--AANAT: 12%|█▏ | 3/25 [00:00<00:02, 9.53it/s]
Processing UBE2O--AANAT: 16%|█▌ | 4/25 [00:00<00:02, 9.57it/s]
Processing RIOK3--LINC01894: 16%|█▌ | 4/25 [00:00<00:02, 9.57it/s]
Processing RIOK3--LINC01894: 20%|██ | 5/25 [00:00<00:02, 9.59it/s]
Processing ARPC3--LINC02827: 20%|██ | 5/25 [00:00<00:02, 9.59it/s]
Processing ARPC3--LINC02827: 24%|██▍ | 6/25 [00:00<00:01, 9.60it/s]
Processing ACTBP6--ACTB: 24%|██▍ | 6/25 [00:00<00:01, 9.60it/s]
Processing ACTBP6--ACTB: 28%|██▊ | 7/25 [00:00<00:01, 9.61it/s]
Processing UST--TMTC2: 28%|██▊ | 7/25 [00:00<00:01, 9.61it/s]
Processing UST--TMTC2: 32%|███▏ | 8/25 [00:00<00:01, 9.61it/s]
Processing TLK2--AC240565.1: 32%|███▏ | 8/25 [00:00<00:01, 9.61it/s]
Processing TLK2--AC240565.1: 36%|███▌ | 9/25 [00:00<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGA8: 36%|███▌ | 9/25 [00:00<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGA8: 40%|████ | 10/25 [00:01<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGC5: 40%|████ | 10/25 [00:01<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGC5: 44%|████▍ | 11/25 [00:01<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGC4: 44%|████▍ | 11/25 [00:01<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGC4: 48%|████▊ | 12/25 [00:01<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGB6: 48%|████▊ | 12/25 [00:01<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGB6: 52%|█████▏ | 13/25 [00:01<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGC3: 52%|█████▏ | 13/25 [00:01<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGC3: 56%|█████▌ | 14/25 [00:01<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGB7: 56%|█████▌ | 14/25 [00:01<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGB7: 60%|██████ | 15/25 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA11: 60%|██████ | 15/25 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA11: 64%|██████▍ | 16/25 [00:01<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGA10: 64%|██████▍ | 16/25 [00:01<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGA10: 68%|██████▊ | 17/25 [00:01<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGA12: 68%|██████▊ | 17/25 [00:01<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGA12: 72%|███████▏ | 18/25 [00:01<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGA9: 72%|███████▏ | 18/25 [00:01<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGA9: 76%|███████▌ | 19/25 [00:01<00:00, 9.63it/s]
Processing NR2F6--CILP2: 76%|███████▌ | 19/25 [00:01<00:00, 9.63it/s]
Processing NR2F6--CILP2: 80%|████████ | 20/25 [00:02<00:00, 9.63it/s]
Processing LANCL2--LANCL2: 80%|████████ | 20/25 [00:02<00:00, 9.63it/s]
Processing LANCL2--LANCL2: 84%|████████▍ | 21/25 [00:02<00:00, 9.63it/s]
Processing AKAP12--PHBP1: 84%|████████▍ | 21/25 [00:02<00:00, 9.63it/s]
Processing AKAP12--PHBP1: 88%|████████▊ | 22/25 [00:02<00:00, 9.63it/s]
Processing AKAP12--ULBP3: 88%|████████▊ | 22/25 [00:02<00:00, 9.63it/s]
Processing AKAP12--ULBP3: 92%|█████████▏| 23/25 [00:02<00:00, 9.63it/s]
Processing AC092807.3--DDAH1: 92%|█████████▏| 23/25 [00:02<00:00, 9.63it/s]
Processing AC092807.3--DDAH1: 96%|█████████▌| 24/25 [00:02<00:00, 9.63it/s]
Processing TAF4B--B4GALT6: 96%|█████████▌| 24/25 [00:02<00:00, 9.63it/s]
Processing TAF4B--B4GALT6: 100%|██████████| 25/25 [00:02<00:00, 9.62it/s]
Processing TAF4B--B4GALT6: 100%|██████████| 25/25 [00:02<00:00, 9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory