[W::hts_idx_load3] The index file is older than the data file: 659_bQZ-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	371691215
Known Splicing Events:	367562581
Partial Novel Splicing Events:	1950093
Novel Splicing Events:	2020745
Filtered Splicing Events:	157796

Total splicing  Junctions:	501273
Known Splicing Junctions:	265463
Partial Novel Splicing Junctions:	129246
Novel Splicing Junctions:	106564

===================================================================
Create BED file ...
Create Interact file ...