Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/646dd48793921ed8ec9b15cbf8d3ff/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/430d5c84e2fc7c5d9cc3551e0d55b0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/430d5c84e2fc7c5d9cc3551e0d55b0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/9a877395d776ae873b22a61b4fedf4/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 371691215
[W::hts_idx_load3] The index file is older than the data file: 659_bQZ-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	371691215
Known Splicing Events:	367562581
Partial Novel Splicing Events:	1950093
Novel Splicing Events:	2020745
Filtered Splicing Events:	157796

Total splicing  Junctions:	501273
Known Splicing Junctions:	265463
Partial Novel Splicing Junctions:	129246
Novel Splicing Junctions:	106564

===================================================================
Create BED file ...
Create Interact file ...