Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/646dd48793921ed8ec9b15cbf8d3ff/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/cd2c524433e5553e72759319ea18c2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/cd2c524433e5553e72759319ea18c2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/9a877395d776ae873b22a61b4fedf4/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bQZ-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (18576024) splicing reads. 281899 splicing junctions. 190987 known splicing junctions. 90912 novel splicing junctions.
sampling 10% (37152049) splicing reads. 338616 splicing junctions. 202242 known splicing junctions. 136374 novel splicing junctions.
sampling 15% (55728074) splicing reads. 374632 splicing junctions. 207797 known splicing junctions. 166835 novel splicing junctions.
sampling 20% (74304099) splicing reads. 400149 splicing junctions. 211188 known splicing junctions. 188961 novel splicing junctions.
sampling 25% (92880124) splicing reads. 419140 splicing junctions. 213515 known splicing junctions. 205625 novel splicing junctions.
sampling 30% (111456148) splicing reads. 433795 splicing junctions. 215191 known splicing junctions. 218604 novel splicing junctions.
sampling 35% (130032173) splicing reads. 445741 splicing junctions. 216437 known splicing junctions. 229304 novel splicing junctions.
sampling 40% (148608198) splicing reads. 455519 splicing junctions. 217372 known splicing junctions. 238147 novel splicing junctions.
sampling 45% (167184223) splicing reads. 463637 splicing junctions. 218218 known splicing junctions. 245419 novel splicing junctions.
sampling 50% (185760248) splicing reads. 470443 splicing junctions. 218923 known splicing junctions. 251520 novel splicing junctions.
sampling 55% (204336272) splicing reads. 476146 splicing junctions. 219489 known splicing junctions. 256657 novel splicing junctions.
sampling 60% (222912297) splicing reads. 481056 splicing junctions. 219952 known splicing junctions. 261104 novel splicing junctions.
sampling 65% (241488322) splicing reads. 485227 splicing junctions. 220320 known splicing junctions. 264907 novel splicing junctions.
sampling 70% (260064347) splicing reads. 488796 splicing junctions. 220645 known splicing junctions. 268151 novel splicing junctions.
sampling 75% (278640372) splicing reads. 491881 splicing junctions. 220958 known splicing junctions. 270923 novel splicing junctions.
sampling 80% (297216396) splicing reads. 494453 splicing junctions. 221169 known splicing junctions. 273284 novel splicing junctions.
sampling 85% (315792421) splicing reads. 496671 splicing junctions. 221368 known splicing junctions. 275303 novel splicing junctions.
sampling 90% (334368446) splicing reads. 498485 splicing junctions. 221522 known splicing junctions. 276963 novel splicing junctions.
sampling 95% (352944471) splicing reads. 499935 splicing junctions. 221634 known splicing junctions. 278301 novel splicing junctions.
sampling 100% (371520496) splicing reads. 501063 splicing junctions. 221734 known splicing junctions. 279329 novel splicing junctions.
null device 
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