Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/a9928991aa80f9f852e737a9ff5067/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/a9928991aa80f9f852e737a9ff5067/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/ea83f804f8398b21fdfa80f7295826/659_bua-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/35589e7482d5b3ea6e6590c5db3051/659_bua-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bua-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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