Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/11aa50f8bf651953c35baf9cd9c664/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/11aa50f8bf651953c35baf9cd9c664/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/91a4481e3fc35d41d38de4572c132f/659_epP-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_epP-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_epP-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_epP-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:00:36.694 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:00:36 GMT 2026] MarkDuplicates --INPUT 659_epP-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_epP-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_epP-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:00:36 GMT 2026] Executing as ?@nf-c711aa50f8bf651953c35baf9cd9c664-9c556-wgrkf on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:00:36 MarkDuplicates Start of doWork freeMemory: 105828872; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:00:36 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:00:36 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,053,868
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 6324 as yet unmatched pairs. 2587 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,437,387
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 9363 as yet unmatched pairs. 1376 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:2,497,527
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 12811 as yet unmatched pairs. 1044 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:3,514,662
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 18691 as yet unmatched pairs. 2228 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:8,358,791
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 21688 as yet unmatched pairs. 1160 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:10,678,284
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 24340 as yet unmatched pairs. 400 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:12,341,854
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 28110 as yet unmatched pairs. 778 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:16,232,515
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 30787 as yet unmatched pairs. 197 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:19,077,996
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 35033 as yet unmatched pairs. 829 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 3s. Last read position: chr1:20,604,969
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 37811 as yet unmatched pairs. 294 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:21,851,551
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 41615 as yet unmatched pairs. 808 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:23,082,316
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 45042 as yet unmatched pairs. 907 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:25,863,706
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 47575 as yet unmatched pairs. 358 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:27,287,800
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 51096 as yet unmatched pairs. 558 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:30,739,873
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 54763 as yet unmatched pairs. 783 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:32,207,486
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 58127 as yet unmatched pairs. 530 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:33,491,093
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 61187 as yet unmatched pairs. 229 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:36,320,289
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 65095 as yet unmatched pairs. 733 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:39,442,554
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 68565 as yet unmatched pairs. 1078 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:42,926,914
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 72064 as yet unmatched pairs. 1536 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:43,653,196
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 74602 as yet unmatched pairs. 557 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:45,633,589
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 78673 as yet unmatched pairs. 1040 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:51,301,772
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 81303 as yet unmatched pairs. 396 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:55,043,911
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 86247 as yet unmatched pairs. 2000 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:66,635,964
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 87733 as yet unmatched pairs. 433 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:87,092,576
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 90744 as yet unmatched pairs. 282 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:99,881,620
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 93790 as yet unmatched pairs. 486 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:109,656,325
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 96958 as yet unmatched pairs. 700 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:112,705,007
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 99567 as yet unmatched pairs. 370 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:116,388,180
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 104129 as yet unmatched pairs. 1543 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:119,955,152
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 107609 as yet unmatched pairs. 2106 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:144,914,734
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 107656 as yet unmatched pairs. 400 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:146,971,319
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 109706 as yet unmatched pairs. 876 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:148,972,535
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 110628 as yet unmatched pairs. 356 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,819
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 112976 as yet unmatched pairs. 921 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:150,755,035
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 115963 as yet unmatched pairs. 1035 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:152,214,199
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 118431 as yet unmatched pairs. 500 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,631
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 128865 as yet unmatched pairs. 8027 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:154,959,552
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 124349 as yet unmatched pairs. 378 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:155,191,855
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 127947 as yet unmatched pairs. 901 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:155,765,909
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 130811 as yet unmatched pairs. 940 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:156,135,221
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 146957 as yet unmatched pairs. 13052 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 2s. Last read position: chr1:156,593,533
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 139313 as yet unmatched pairs. 1688 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:160,543,897
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 141000 as yet unmatched pairs. 231 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:166,276,425
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 143972 as yet unmatched pairs. 143 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:169,130,069
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 163114 as yet unmatched pairs. 15780 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:176,206,595
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 151189 as yet unmatched pairs. 946 records in RAM.
INFO 2026-06-08 09:02:13 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:183,186,426
INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 154235 as yet unmatched pairs. 621 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:186,374,894
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 158863 as yet unmatched pairs. 2451 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:201,900,025
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 159838 as yet unmatched pairs. 218 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:203,852,213
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 165766 as yet unmatched pairs. 2995 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr1:206,930,295
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 168542 as yet unmatched pairs. 2661 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 3s. Last read position: chr1:207,911,002
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 169107 as yet unmatched pairs. 131 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:220,072,896
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 172768 as yet unmatched pairs. 772 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:225,856,709
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 176941 as yet unmatched pairs. 1937 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:228,275,805
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 178925 as yet unmatched pairs. 415 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:234,430,106
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 183289 as yet unmatched pairs. 916 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:244,705,694
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 185943 as yet unmatched pairs. 171 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 3s. Last read position: chr2:3,580,110
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 190537 as yet unmatched pairs. 184355 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr2:14,634,661
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 194545 as yet unmatched pairs. 188241 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr2:24,706,719
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 196457 as yet unmatched pairs. 190020 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr2:27,238,086
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 199746 as yet unmatched pairs. 193227 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:32,204,609
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 202767 as yet unmatched pairs. 196173 records in RAM.
INFO 2026-06-08 09:02:47 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,257
INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 294618 as yet unmatched pairs. 191795 records in RAM.
INFO 2026-06-08 09:02:49 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 562948 as yet unmatched pairs. 175144 records in RAM.
INFO 2026-06-08 09:02:51 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 1229899 as yet unmatched pairs. 133800 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 1662967 as yet unmatched pairs. 106594 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 1667697 as yet unmatched pairs. 106379 records in RAM.
INFO 2026-06-08 09:02:56 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,427
INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 1753882 as yet unmatched pairs. 101101 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:42,054,984
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 1768309 as yet unmatched pairs. 99898 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:43,979,925
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 1763560 as yet unmatched pairs. 94961 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 2s. Last read position: chr2:54,623,565
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 1760829 as yet unmatched pairs. 92075 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 2s. Last read position: chr2:55,549,819
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 1757277 as yet unmatched pairs. 88474 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:65,088,536
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 1755133 as yet unmatched pairs. 86204 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:72,887,503
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 1751520 as yet unmatched pairs. 82486 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:74,461,973
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 1748921 as yet unmatched pairs. 79778 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:85,599,214
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 1745083 as yet unmatched pairs. 75871 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,451
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 1743990 as yet unmatched pairs. 74684 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:96,860,817
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 1740647 as yet unmatched pairs. 71252 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:101,004,209
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 1741959 as yet unmatched pairs. 72401 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:108,754,917
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 1736362 as yet unmatched pairs. 66698 records in RAM.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:109,987,353
INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 1733358 as yet unmatched pairs. 63620 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:112,830,304
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 1732037 as yet unmatched pairs. 62217 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 2s. Last read position: chr2:127,582,241
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 1729638 as yet unmatched pairs. 59680 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:134,254,570
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 1726917 as yet unmatched pairs. 56859 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:157,259,060
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 1723616 as yet unmatched pairs. 53446 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:168,769,347
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 1720952 as yet unmatched pairs. 50641 records in RAM.
INFO 2026-06-08 09:03:33 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:177,212,833
INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 1720219 as yet unmatched pairs. 49729 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:186,622,369
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 1716276 as yet unmatched pairs. 45677 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr2:189,008,975
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 1712701 as yet unmatched pairs. 41999 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 2s. Last read position: chr2:195,680,863
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 1709173 as yet unmatched pairs. 38359 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:201,706,873
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 1706536 as yet unmatched pairs. 35535 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:209,695,043
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 1703391 as yet unmatched pairs. 32256 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,380,811
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 1707473 as yet unmatched pairs. 36274 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:215,422,091
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 1701441 as yet unmatched pairs. 30202 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:217,836,015
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 1696447 as yet unmatched pairs. 25155 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:219,173,437
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 1693247 as yet unmatched pairs. 21849 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:219,597,913
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 1688947 as yet unmatched pairs. 17441 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:231,062,247
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 1685984 as yet unmatched pairs. 14332 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr2:233,551,402
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 1683102 as yet unmatched pairs. 11348 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:237,388,046
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 1680713 as yet unmatched pairs. 8815 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:240,630,086
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 1676996 as yet unmatched pairs. 4953 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 2s. Last read position: chr2:241,776,904
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 1673257 as yet unmatched pairs. 1062 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 3s. Last read position: chr3:9,934,597
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 1669717 as yet unmatched pairs. 88881 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:13,571,028
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 1666742 as yet unmatched pairs. 85819 records in RAM.
INFO 2026-06-08 09:04:08 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:31,533,198
INFO 2026-06-08 09:04:08 MarkDuplicates Tracking 1664324 as yet unmatched pairs. 83242 records in RAM.
INFO 2026-06-08 09:04:10 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:38,006,631
INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 1660912 as yet unmatched pairs. 79675 records in RAM.
INFO 2026-06-08 09:04:12 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:42,125,444
INFO 2026-06-08 09:04:12 MarkDuplicates Tracking 1657546 as yet unmatched pairs. 76183 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:46,671,982
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 1655687 as yet unmatched pairs. 74193 records in RAM.
INFO 2026-06-08 09:04:15 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:47,412,936
INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 1651216 as yet unmatched pairs. 69602 records in RAM.
INFO 2026-06-08 09:04:17 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:48,443,872
INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 1647792 as yet unmatched pairs. 66099 records in RAM.
INFO 2026-06-08 09:04:19 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:48,688,518
INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 1644687 as yet unmatched pairs. 62916 records in RAM.
INFO 2026-06-08 09:04:21 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:49,121,815
INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 1641383 as yet unmatched pairs. 59539 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:49,728,010
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 1637766 as yet unmatched pairs. 55843 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:50,300,678
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 1633988 as yet unmatched pairs. 51968 records in RAM.
INFO 2026-06-08 09:04:26 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:52,350,051
INFO 2026-06-08 09:04:26 MarkDuplicates Tracking 1630817 as yet unmatched pairs. 48714 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:52,644,739
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 1627398 as yet unmatched pairs. 45231 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:58,108,553
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 1624772 as yet unmatched pairs. 42473 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:66,386,161
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 1621987 as yet unmatched pairs. 39515 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 2s. Last read position: chr3:100,643,318
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 1618668 as yet unmatched pairs. 36074 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 2s. Last read position: chr3:113,721,727
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 1617033 as yet unmatched pairs. 34326 records in RAM.
INFO 2026-06-08 09:04:39 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr3:122,703,757
INFO 2026-06-08 09:04:39 MarkDuplicates Tracking 1615086 as yet unmatched pairs. 32265 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:126,989,237
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 1611308 as yet unmatched pairs. 28334 records in RAM.
INFO 2026-06-08 09:04:42 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:129,302,069
INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 1607475 as yet unmatched pairs. 24415 records in RAM.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:138,077,541
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 1604178 as yet unmatched pairs. 20976 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:150,545,703
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 1602788 as yet unmatched pairs. 19461 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:170,360,709
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 1599096 as yet unmatched pairs. 15629 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:184,170,062
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 1596202 as yet unmatched pairs. 12595 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:185,922,041
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 1592863 as yet unmatched pairs. 9171 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:194,687,628
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 1589897 as yet unmatched pairs. 6067 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:195,783,682
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 1592054 as yet unmatched pairs. 8171 records in RAM.
INFO 2026-06-08 09:04:56 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:196,238,770
INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 1586208 as yet unmatched pairs. 2281 records in RAM.
INFO 2026-06-08 09:04:58 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 2s. Last read position: chr4:957,876
INFO 2026-06-08 09:04:58 MarkDuplicates Tracking 1582992 as yet unmatched pairs. 50164 records in RAM.
INFO 2026-06-08 09:05:00 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:1,737,663
INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 1580613 as yet unmatched pairs. 47661 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:2,963,156
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 1575658 as yet unmatched pairs. 42607 records in RAM.
INFO 2026-06-08 09:05:04 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr4:7,768,937
INFO 2026-06-08 09:05:04 MarkDuplicates Tracking 1573418 as yet unmatched pairs. 40211 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr4:22,387,937
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 1569499 as yet unmatched pairs. 36184 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr4:39,770,705
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 1566685 as yet unmatched pairs. 33204 records in RAM.
INFO 2026-06-08 09:05:10 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:54,270,698
INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 1564045 as yet unmatched pairs. 30392 records in RAM.
INFO 2026-06-08 09:05:12 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:73,091,783
INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 1560590 as yet unmatched pairs. 26829 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr4:77,058,570
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 1558106 as yet unmatched pairs. 24227 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:87,457,901
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 1554464 as yet unmatched pairs. 20466 records in RAM.
INFO 2026-06-08 09:05:17 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:105,237,227
INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 1552120 as yet unmatched pairs. 17946 records in RAM.
INFO 2026-06-08 09:05:19 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:121,671,633
INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 1549896 as yet unmatched pairs. 15570 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:140,622,445
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 1546449 as yet unmatched pairs. 12038 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:151,174,948
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 1545360 as yet unmatched pairs. 10823 records in RAM.
INFO 2026-06-08 09:05:25 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:168,898,592
INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 1541206 as yet unmatched pairs. 6518 records in RAM.
INFO 2026-06-08 09:05:26 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr4:186,603,651
INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 1538618 as yet unmatched pairs. 3829 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr4:186,709,260
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 1536967 as yet unmatched pairs. 2126 records in RAM.
INFO 2026-06-08 09:05:31 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr5:5,473,668
INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 1531607 as yet unmatched pairs. 67899 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:14,368,748
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 1529885 as yet unmatched pairs. 66080 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:16,681,890
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 1525636 as yet unmatched pairs. 61727 records in RAM.
INFO 2026-06-08 09:05:36 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:40,728,380
INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 1522746 as yet unmatched pairs. 58703 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:62,398,823
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 1519925 as yet unmatched pairs. 55722 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:72,223,730
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 1518294 as yet unmatched pairs. 53966 records in RAM.
INFO 2026-06-08 09:05:41 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr5:79,734,616
INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 1515052 as yet unmatched pairs. 50571 records in RAM.
INFO 2026-06-08 09:05:43 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:96,742,743
INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 1513164 as yet unmatched pairs. 48551 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 3s. Last read position: chr5:116,504,917
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 1509678 as yet unmatched pairs. 44923 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:132,198,899
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 1506865 as yet unmatched pairs. 41968 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:135,578,434
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 1503651 as yet unmatched pairs. 38661 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:139,316,042
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 1501906 as yet unmatched pairs. 36830 records in RAM.
INFO 2026-06-08 09:05:54 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:141,339,977
INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 1497568 as yet unmatched pairs. 32416 records in RAM.
INFO 2026-06-08 09:05:56 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:146,000,151
INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 1495189 as yet unmatched pairs. 29878 records in RAM.
INFO 2026-06-08 09:05:57 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:150,123,157
INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 1493013 as yet unmatched pairs. 27591 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,305
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 1501435 as yet unmatched pairs. 35947 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:154,799,937
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 1485474 as yet unmatched pairs. 19904 records in RAM.
INFO 2026-06-08 09:06:03 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:171,390,050
INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 1490761 as yet unmatched pairs. 25095 records in RAM.
INFO 2026-06-08 09:06:05 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:176,347,561
INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 1480467 as yet unmatched pairs. 14727 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:177,310,466
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 1477024 as yet unmatched pairs. 11201 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:178,884,050
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 1473537 as yet unmatched pairs. 7650 records in RAM.
INFO 2026-06-08 09:06:10 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:179,822,975
INFO 2026-06-08 09:06:10 MarkDuplicates Tracking 1475489 as yet unmatched pairs. 9548 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 3s. Last read position: chr5:181,233,751
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 1467440 as yet unmatched pairs. 1414 records in RAM.
INFO 2026-06-08 09:06:16 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr6:4,953,845
INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 1463928 as yet unmatched pairs. 84545 records in RAM.
INFO 2026-06-08 09:06:18 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:7,904,686
INFO 2026-06-08 09:06:18 MarkDuplicates Tracking 1462377 as yet unmatched pairs. 82909 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:21,595,874
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 1458307 as yet unmatched pairs. 78715 records in RAM.
INFO 2026-06-08 09:06:21 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:26,467,988
INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 1454924 as yet unmatched pairs. 75253 records in RAM.
INFO 2026-06-08 09:06:23 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,552
INFO 2026-06-08 09:06:23 MarkDuplicates Tracking 1459986 as yet unmatched pairs. 80267 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:30,647,618
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 1449536 as yet unmatched pairs. 69749 records in RAM.
INFO 2026-06-08 09:06:26 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,075
INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 1450984 as yet unmatched pairs. 71125 records in RAM.
INFO 2026-06-08 09:06:28 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:31,640,251
INFO 2026-06-08 09:06:28 MarkDuplicates Tracking 1444847 as yet unmatched pairs. 64923 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr6:31,816,564
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 1441313 as yet unmatched pairs. 61349 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,252
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 1446358 as yet unmatched pairs. 66345 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:32,043,281
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 1435851 as yet unmatched pairs. 55793 records in RAM.
INFO 2026-06-08 09:06:35 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:32,852,471
INFO 2026-06-08 09:06:35 MarkDuplicates Tracking 1436269 as yet unmatched pairs. 56161 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:33,315,673
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 1429358 as yet unmatched pairs. 49196 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:34,243,490
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 1426687 as yet unmatched pairs. 46489 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:36,985,938
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 1424173 as yet unmatched pairs. 43843 records in RAM.
INFO 2026-06-08 09:06:43 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr6:43,048,357
INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 1419747 as yet unmatched pairs. 39313 records in RAM.
INFO 2026-06-08 09:06:45 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr6:43,784,655
INFO 2026-06-08 09:06:45 MarkDuplicates Tracking 1416263 as yet unmatched pairs. 35732 records in RAM.
INFO 2026-06-08 09:06:47 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:56,459,044
INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 1413449 as yet unmatched pairs. 32756 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:75,132,064
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 1410987 as yet unmatched pairs. 30160 records in RAM.
INFO 2026-06-08 09:06:52 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 3s. Last read position: chr6:85,612,802
INFO 2026-06-08 09:06:52 MarkDuplicates Tracking 1408197 as yet unmatched pairs. 27276 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:100,800,413
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 1405505 as yet unmatched pairs. 24501 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:111,262,259
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 1403045 as yet unmatched pairs. 21930 records in RAM.
INFO 2026-06-08 09:06:57 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:128,005,217
INFO 2026-06-08 09:06:57 MarkDuplicates Tracking 1399239 as yet unmatched pairs. 18018 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:136,669,296
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 1396462 as yet unmatched pairs. 15165 records in RAM.
INFO 2026-06-08 09:07:01 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:144,789,232
INFO 2026-06-08 09:07:01 MarkDuplicates Tracking 1393479 as yet unmatched pairs. 12064 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:156,778,116
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 1390427 as yet unmatched pairs. 8951 records in RAM.
INFO 2026-06-08 09:07:04 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:158,784,655
INFO 2026-06-08 09:07:04 MarkDuplicates Tracking 1392667 as yet unmatched pairs. 11124 records in RAM.
INFO 2026-06-08 09:07:06 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:166,946,669
INFO 2026-06-08 09:07:06 MarkDuplicates Tracking 1385617 as yet unmatched pairs. 3979 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 2s. Last read position: chr7:854,970
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 1381696 as yet unmatched pairs. 104533 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:2,540,988
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 1377552 as yet unmatched pairs. 100296 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:5,371,307
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 1375709 as yet unmatched pairs. 98363 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 3s. Last read position: chr7:5,528,629
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 1373829 as yet unmatched pairs. 96420 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:7,969,376
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 1365915 as yet unmatched pairs. 88432 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:26,196,820
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 1365261 as yet unmatched pairs. 87664 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:37,920,908
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 1360491 as yet unmatched pairs. 82768 records in RAM.
INFO 2026-06-08 09:07:22 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:44,114,117
INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 1358966 as yet unmatched pairs. 81181 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:48,106,870
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 1354155 as yet unmatched pairs. 76286 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:70,763,009
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 1351427 as yet unmatched pairs. 73437 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:73,700,448
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 1349099 as yet unmatched pairs. 71069 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:75,094,795
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 1345533 as yet unmatched pairs. 67441 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:76,482,783
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 1343564 as yet unmatched pairs. 65405 records in RAM.
INFO 2026-06-08 09:07:32 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:92,001,218
INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 1340552 as yet unmatched pairs. 62317 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:94,405,706
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 1342272 as yet unmatched pairs. 63968 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:95,416,274
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 1335242 as yet unmatched pairs. 56881 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 2s. Last read position: chr7:99,619,633
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 1331659 as yet unmatched pairs. 53194 records in RAM.
INFO 2026-06-08 09:07:41 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr7:100,431,423
INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 1328749 as yet unmatched pairs. 50240 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:100,954,817
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 1324867 as yet unmatched pairs. 46283 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,192
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 1325958 as yet unmatched pairs. 47341 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,764
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 1323619 as yet unmatched pairs. 44993 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,749
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 1324417 as yet unmatched pairs. 45789 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,478
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 1341852 as yet unmatched pairs. 63220 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,129
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 1333562 as yet unmatched pairs. 54898 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,989
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 1333199 as yet unmatched pairs. 54508 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,699
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 1340369 as yet unmatched pairs. 61677 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,650
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 1336105 as yet unmatched pairs. 57398 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,424
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 1341513 as yet unmatched pairs. 62788 records in RAM.
INFO 2026-06-08 09:07:57 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,138
INFO 2026-06-08 09:07:57 MarkDuplicates Tracking 1325344 as yet unmatched pairs. 46601 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,818
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 1316899 as yet unmatched pairs. 38142 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,270
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 1316299 as yet unmatched pairs. 37521 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 2s. Last read position: chr7:101,034,310
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 1312510 as yet unmatched pairs. 33709 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 2s. Last read position: chr7:102,028,136
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 1309270 as yet unmatched pairs. 30415 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:102,666,953
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 1308203 as yet unmatched pairs. 29314 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:114,689,795
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 1304078 as yet unmatched pairs. 25096 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:127,707,632
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 1305922 as yet unmatched pairs. 26863 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:129,017,997
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 1298876 as yet unmatched pairs. 19765 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr7:138,844,423
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 1295827 as yet unmatched pairs. 16615 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:143,265,024
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 1295592 as yet unmatched pairs. 16270 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr7:144,623,190
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 1290494 as yet unmatched pairs. 11142 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:150,815,538
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 1287002 as yet unmatched pairs. 7587 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr7:152,148,318
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 1283481 as yet unmatched pairs. 3994 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr7:158,763,083
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 1280885 as yet unmatched pairs. 1282 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 2s. Last read position: chr8:11,847,707
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 1278722 as yet unmatched pairs. 81384 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr8:22,138,692
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 1274085 as yet unmatched pairs. 76675 records in RAM.
INFO 2026-06-08 09:08:27 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 2s. Last read position: chr8:23,298,032
INFO 2026-06-08 09:08:27 MarkDuplicates Tracking 1270238 as yet unmatched pairs. 72763 records in RAM.
INFO 2026-06-08 09:08:29 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 2s. Last read position: chr8:30,549,561
INFO 2026-06-08 09:08:29 MarkDuplicates Tracking 1267259 as yet unmatched pairs. 69680 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr8:37,875,145
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 1263619 as yet unmatched pairs. 65989 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr8:38,847,957
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 1262958 as yet unmatched pairs. 65278 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr8:47,970,485
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 1257371 as yet unmatched pairs. 59587 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr8:67,266,001
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 1254933 as yet unmatched pairs. 57060 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr8:89,921,091
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 1252042 as yet unmatched pairs. 54091 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr8:99,871,424
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 1249214 as yet unmatched pairs. 51167 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 2s. Last read position: chr8:108,228,301
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 1246692 as yet unmatched pairs. 48567 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 62s. Last read position: chr8:127,738,335
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 1244117 as yet unmatched pairs. 45903 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 2s. Last read position: chr8:142,300,575
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 1239959 as yet unmatched pairs. 41589 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:143,726,270
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 1237971 as yet unmatched pairs. 39533 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,239
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 1233356 as yet unmatched pairs. 34867 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,994
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 1241900 as yet unmatched pairs. 43408 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,019
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 1231898 as yet unmatched pairs. 33396 records in RAM.
INFO 2026-06-08 09:09:55 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,923
INFO 2026-06-08 09:09:55 MarkDuplicates Tracking 1234408 as yet unmatched pairs. 35902 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,620
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 1230035 as yet unmatched pairs. 31524 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,363
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 1232435 as yet unmatched pairs. 33913 records in RAM.
INFO 2026-06-08 09:09:58 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,140
INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 1243014 as yet unmatched pairs. 44472 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,989
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 1222096 as yet unmatched pairs. 23524 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,973
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 1223316 as yet unmatched pairs. 24734 records in RAM.
INFO 2026-06-08 09:10:02 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,940
INFO 2026-06-08 09:10:02 MarkDuplicates Tracking 1220484 as yet unmatched pairs. 21900 records in RAM.
INFO 2026-06-08 09:10:04 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr8:143,868,397
INFO 2026-06-08 09:10:04 MarkDuplicates Tracking 1221821 as yet unmatched pairs. 23230 records in RAM.
INFO 2026-06-08 09:10:06 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr8:143,919,386
INFO 2026-06-08 09:10:06 MarkDuplicates Tracking 1220622 as yet unmatched pairs. 21963 records in RAM.
INFO 2026-06-08 09:10:08 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,930
INFO 2026-06-08 09:10:08 MarkDuplicates Tracking 1214075 as yet unmatched pairs. 15343 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr8:144,191,759
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 1208595 as yet unmatched pairs. 9792 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr8:144,436,145
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 1203498 as yet unmatched pairs. 4635 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 2s. Last read position: chr9:317,042
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 1199191 as yet unmatched pairs. 80167 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:13,219,713
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 1196151 as yet unmatched pairs. 76894 records in RAM.
INFO 2026-06-08 09:10:17 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:33,256,843
INFO 2026-06-08 09:10:17 MarkDuplicates Tracking 1193286 as yet unmatched pairs. 73889 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr9:35,237,801
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 1190790 as yet unmatched pairs. 71325 records in RAM.
INFO 2026-06-08 09:10:20 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:35,809,286
INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 1186740 as yet unmatched pairs. 67231 records in RAM.
INFO 2026-06-08 09:10:22 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:69,035,900
INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 1184807 as yet unmatched pairs. 65168 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:77,238,290
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 1181788 as yet unmatched pairs. 62060 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:89,350,767
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 1178259 as yet unmatched pairs. 58441 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:93,452,401
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 1176621 as yet unmatched pairs. 56720 records in RAM.
INFO 2026-06-08 09:10:29 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 2s. Last read position: chr9:98,943,948
INFO 2026-06-08 09:10:29 MarkDuplicates Tracking 1172419 as yet unmatched pairs. 52407 records in RAM.
INFO 2026-06-08 09:10:31 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr9:110,138,254
INFO 2026-06-08 09:10:31 MarkDuplicates Tracking 1168797 as yet unmatched pairs. 48716 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr9:114,376,935
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 1166132 as yet unmatched pairs. 45976 records in RAM.
INFO 2026-06-08 09:10:35 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 2s. Last read position: chr9:121,768,609
INFO 2026-06-08 09:10:35 MarkDuplicates Tracking 1162580 as yet unmatched pairs. 42327 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr9:127,444,375
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 1159144 as yet unmatched pairs. 38798 records in RAM.
INFO 2026-06-08 09:10:38 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr9:128,179,329
INFO 2026-06-08 09:10:38 MarkDuplicates Tracking 1156364 as yet unmatched pairs. 35929 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr9:128,721,345
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 1153203 as yet unmatched pairs. 32697 records in RAM.
INFO 2026-06-08 09:10:42 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr9:130,631,624
INFO 2026-06-08 09:10:42 MarkDuplicates Tracking 1149386 as yet unmatched pairs. 28791 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr9:131,580,337
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 1146032 as yet unmatched pairs. 25394 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr9:133,797,727
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 1142628 as yet unmatched pairs. 21900 records in RAM.
INFO 2026-06-08 09:10:47 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr9:135,946,278
INFO 2026-06-08 09:10:47 MarkDuplicates Tracking 1138935 as yet unmatched pairs. 18124 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr9:136,502,280
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 1135977 as yet unmatched pairs. 15109 records in RAM.
INFO 2026-06-08 09:10:50 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr9:136,921,059
INFO 2026-06-08 09:10:50 MarkDuplicates Tracking 1131890 as yet unmatched pairs. 10962 records in RAM.
INFO 2026-06-08 09:10:52 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr9:137,189,116
INFO 2026-06-08 09:10:52 MarkDuplicates Tracking 1128424 as yet unmatched pairs. 7415 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr9:137,457,464
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 1129091 as yet unmatched pairs. 8022 records in RAM.
INFO 2026-06-08 09:10:56 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 2s. Last read position: chr10:3,781,935
INFO 2026-06-08 09:10:56 MarkDuplicates Tracking 1120678 as yet unmatched pairs. 56926 records in RAM.
INFO 2026-06-08 09:10:57 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:15,212,887
INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 1117038 as yet unmatched pairs. 53189 records in RAM.
INFO 2026-06-08 09:10:59 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 2s. Last read position: chr10:27,971,205
INFO 2026-06-08 09:10:59 MarkDuplicates Tracking 1113662 as yet unmatched pairs. 49716 records in RAM.
INFO 2026-06-08 09:11:01 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:32,048,485
INFO 2026-06-08 09:11:01 MarkDuplicates Tracking 1115955 as yet unmatched pairs. 51957 records in RAM.
INFO 2026-06-08 09:11:03 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr10:45,699,581
INFO 2026-06-08 09:11:03 MarkDuplicates Tracking 1108622 as yet unmatched pairs. 44548 records in RAM.
INFO 2026-06-08 09:11:05 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr10:49,524,454
INFO 2026-06-08 09:11:05 MarkDuplicates Tracking 1106376 as yet unmatched pairs. 42276 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr10:68,337,259
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 1103552 as yet unmatched pairs. 39395 records in RAM.
INFO 2026-06-08 09:11:09 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr10:72,274,927
INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 1103042 as yet unmatched pairs. 38808 records in RAM.
INFO 2026-06-08 09:11:11 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr10:74,103,842
INFO 2026-06-08 09:11:11 MarkDuplicates Tracking 1097107 as yet unmatched pairs. 32794 records in RAM.
INFO 2026-06-08 09:11:13 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr10:80,167,274
INFO 2026-06-08 09:11:13 MarkDuplicates Tracking 1094884 as yet unmatched pairs. 30500 records in RAM.
INFO 2026-06-08 09:11:14 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr10:89,402,410
INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 1091549 as yet unmatched pairs. 27077 records in RAM.
INFO 2026-06-08 09:11:16 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr10:95,625,391
INFO 2026-06-08 09:11:16 MarkDuplicates Tracking 1089341 as yet unmatched pairs. 24775 records in RAM.
INFO 2026-06-08 09:11:17 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr10:99,698,722
INFO 2026-06-08 09:11:17 MarkDuplicates Tracking 1085584 as yet unmatched pairs. 20951 records in RAM.
INFO 2026-06-08 09:11:19 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr10:101,807,843
INFO 2026-06-08 09:11:19 MarkDuplicates Tracking 1082576 as yet unmatched pairs. 17876 records in RAM.
INFO 2026-06-08 09:11:21 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr10:103,602,097
INFO 2026-06-08 09:11:21 MarkDuplicates Tracking 1080166 as yet unmatched pairs. 15401 records in RAM.
INFO 2026-06-08 09:11:23 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr10:112,950,783
INFO 2026-06-08 09:11:23 MarkDuplicates Tracking 1076511 as yet unmatched pairs. 11655 records in RAM.
INFO 2026-06-08 09:11:24 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr10:119,596,496
INFO 2026-06-08 09:11:24 MarkDuplicates Tracking 1072903 as yet unmatched pairs. 7938 records in RAM.
INFO 2026-06-08 09:11:26 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr10:122,605,053
INFO 2026-06-08 09:11:26 MarkDuplicates Tracking 1070616 as yet unmatched pairs. 5582 records in RAM.
INFO 2026-06-08 09:11:28 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr10:129,536,306
INFO 2026-06-08 09:11:28 MarkDuplicates Tracking 1068034 as yet unmatched pairs. 2899 records in RAM.
INFO 2026-06-08 09:11:30 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr11:293,694
INFO 2026-06-08 09:11:30 MarkDuplicates Tracking 1068434 as yet unmatched pairs. 142341 records in RAM.
INFO 2026-06-08 09:11:32 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:554,082
INFO 2026-06-08 09:11:32 MarkDuplicates Tracking 1060994 as yet unmatched pairs. 134832 records in RAM.
INFO 2026-06-08 09:11:34 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:758,984
INFO 2026-06-08 09:11:34 MarkDuplicates Tracking 1055905 as yet unmatched pairs. 129701 records in RAM.
INFO 2026-06-08 09:11:36 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:1,025,051
INFO 2026-06-08 09:11:36 MarkDuplicates Tracking 1054239 as yet unmatched pairs. 127982 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:1,078,371
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 1101471 as yet unmatched pairs. 175169 records in RAM.
INFO 2026-06-08 09:11:39 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:1,084,608
INFO 2026-06-08 09:11:39 MarkDuplicates Tracking 1062437 as yet unmatched pairs. 136075 records in RAM.
INFO 2026-06-08 09:11:41 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:1,088,439
INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 1054513 as yet unmatched pairs. 128079 records in RAM.
INFO 2026-06-08 09:11:43 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,229,179
INFO 2026-06-08 09:11:43 MarkDuplicates Tracking 1040970 as yet unmatched pairs. 114468 records in RAM.
INFO 2026-06-08 09:11:45 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 2s. Last read position: chr11:1,243,448
INFO 2026-06-08 09:11:45 MarkDuplicates Tracking 1037082 as yet unmatched pairs. 110557 records in RAM.
INFO 2026-06-08 09:11:47 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,148
INFO 2026-06-08 09:11:47 MarkDuplicates Tracking 1035895 as yet unmatched pairs. 109364 records in RAM.
INFO 2026-06-08 09:11:49 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,741
INFO 2026-06-08 09:11:49 MarkDuplicates Tracking 1039251 as yet unmatched pairs. 112704 records in RAM.
INFO 2026-06-08 09:11:50 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,003
INFO 2026-06-08 09:11:50 MarkDuplicates Tracking 1032093 as yet unmatched pairs. 105519 records in RAM.
INFO 2026-06-08 09:11:52 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:1,754,013
INFO 2026-06-08 09:11:52 MarkDuplicates Tracking 1030405 as yet unmatched pairs. 103808 records in RAM.
INFO 2026-06-08 09:11:54 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:3,693,261
INFO 2026-06-08 09:11:54 MarkDuplicates Tracking 1024466 as yet unmatched pairs. 97807 records in RAM.
INFO 2026-06-08 09:11:55 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:7,635,556
INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 1021115 as yet unmatched pairs. 94408 records in RAM.
INFO 2026-06-08 09:11:57 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:12,008,494
INFO 2026-06-08 09:11:57 MarkDuplicates Tracking 1017976 as yet unmatched pairs. 91194 records in RAM.
INFO 2026-06-08 09:11:59 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:18,400,958
INFO 2026-06-08 09:11:59 MarkDuplicates Tracking 1016507 as yet unmatched pairs. 89656 records in RAM.
INFO 2026-06-08 09:12:01 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:35,139,210
INFO 2026-06-08 09:12:01 MarkDuplicates Tracking 1014148 as yet unmatched pairs. 87211 records in RAM.
INFO 2026-06-08 09:12:03 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:46,310,028
INFO 2026-06-08 09:12:03 MarkDuplicates Tracking 1017020 as yet unmatched pairs. 90026 records in RAM.
INFO 2026-06-08 09:12:04 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:46,899,923
INFO 2026-06-08 09:12:04 MarkDuplicates Tracking 1007065 as yet unmatched pairs. 80022 records in RAM.
INFO 2026-06-08 09:12:06 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:57,320,195
INFO 2026-06-08 09:12:06 MarkDuplicates Tracking 1003167 as yet unmatched pairs. 76063 records in RAM.
INFO 2026-06-08 09:12:09 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr11:60,701,035
INFO 2026-06-08 09:12:09 MarkDuplicates Tracking 999463 as yet unmatched pairs. 72313 records in RAM.
INFO 2026-06-08 09:12:12 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 2s. Last read position: chr11:61,878,797
INFO 2026-06-08 09:12:12 MarkDuplicates Tracking 996261 as yet unmatched pairs. 69078 records in RAM.
INFO 2026-06-08 09:12:13 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:62,528,300
INFO 2026-06-08 09:12:13 MarkDuplicates Tracking 995234 as yet unmatched pairs. 67984 records in RAM.
INFO 2026-06-08 09:12:15 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:62,633,239
INFO 2026-06-08 09:12:15 MarkDuplicates Tracking 991940 as yet unmatched pairs. 64645 records in RAM.
INFO 2026-06-08 09:12:17 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:63,997,650
INFO 2026-06-08 09:12:17 MarkDuplicates Tracking 987652 as yet unmatched pairs. 60319 records in RAM.
INFO 2026-06-08 09:12:19 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:64,765,808
INFO 2026-06-08 09:12:19 MarkDuplicates Tracking 984273 as yet unmatched pairs. 56901 records in RAM.
INFO 2026-06-08 09:12:20 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:65,182,856
INFO 2026-06-08 09:12:20 MarkDuplicates Tracking 981460 as yet unmatched pairs. 54059 records in RAM.
INFO 2026-06-08 09:12:22 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:65,634,332
INFO 2026-06-08 09:12:22 MarkDuplicates Tracking 976697 as yet unmatched pairs. 49098 records in RAM.
INFO 2026-06-08 09:12:24 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr11:66,266,890
INFO 2026-06-08 09:12:24 MarkDuplicates Tracking 972749 as yet unmatched pairs. 45124 records in RAM.
INFO 2026-06-08 09:12:27 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr11:67,250,125
INFO 2026-06-08 09:12:27 MarkDuplicates Tracking 969899 as yet unmatched pairs. 42198 records in RAM.
INFO 2026-06-08 09:12:29 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:67,645,069
INFO 2026-06-08 09:12:29 MarkDuplicates Tracking 965124 as yet unmatched pairs. 37373 records in RAM.
INFO 2026-06-08 09:12:30 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr11:69,295,714
INFO 2026-06-08 09:12:30 MarkDuplicates Tracking 962649 as yet unmatched pairs. 34843 records in RAM.
INFO 2026-06-08 09:12:32 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr11:72,006,092
INFO 2026-06-08 09:12:32 MarkDuplicates Tracking 959342 as yet unmatched pairs. 31476 records in RAM.
INFO 2026-06-08 09:12:34 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:73,310,585
INFO 2026-06-08 09:12:34 MarkDuplicates Tracking 955455 as yet unmatched pairs. 27543 records in RAM.
INFO 2026-06-08 09:12:35 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr11:77,040,330
INFO 2026-06-08 09:12:35 MarkDuplicates Tracking 951420 as yet unmatched pairs. 23438 records in RAM.
INFO 2026-06-08 09:12:38 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr11:93,706,758
INFO 2026-06-08 09:12:38 MarkDuplicates Tracking 948590 as yet unmatched pairs. 20530 records in RAM.
INFO 2026-06-08 09:12:40 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 2s. Last read position: chr11:108,118,374
INFO 2026-06-08 09:12:40 MarkDuplicates Tracking 945268 as yet unmatched pairs. 17143 records in RAM.
INFO 2026-06-08 09:12:42 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:117,228,318
INFO 2026-06-08 09:12:42 MarkDuplicates Tracking 943996 as yet unmatched pairs. 15788 records in RAM.
INFO 2026-06-08 09:12:44 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr11:118,898,726
INFO 2026-06-08 09:12:44 MarkDuplicates Tracking 939993 as yet unmatched pairs. 11744 records in RAM.
INFO 2026-06-08 09:12:46 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr11:120,228,922
INFO 2026-06-08 09:12:46 MarkDuplicates Tracking 937929 as yet unmatched pairs. 9635 records in RAM.
INFO 2026-06-08 09:12:47 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr11:125,580,136
INFO 2026-06-08 09:12:47 MarkDuplicates Tracking 934104 as yet unmatched pairs. 5744 records in RAM.
INFO 2026-06-08 09:12:49 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr11:130,190,489
INFO 2026-06-08 09:12:49 MarkDuplicates Tracking 931675 as yet unmatched pairs. 3220 records in RAM.
INFO 2026-06-08 09:12:51 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 2s. Last read position: chr12:1,083,341
INFO 2026-06-08 09:12:51 MarkDuplicates Tracking 927579 as yet unmatched pairs. 93636 records in RAM.
INFO 2026-06-08 09:12:53 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:6,363,509
INFO 2026-06-08 09:12:53 MarkDuplicates Tracking 925167 as yet unmatched pairs. 91172 records in RAM.
INFO 2026-06-08 09:12:55 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:6,770,417
INFO 2026-06-08 09:12:55 MarkDuplicates Tracking 922533 as yet unmatched pairs. 88495 records in RAM.
INFO 2026-06-08 09:12:57 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 2s. Last read position: chr12:7,433,594
INFO 2026-06-08 09:12:57 MarkDuplicates Tracking 917620 as yet unmatched pairs. 83539 records in RAM.
INFO 2026-06-08 09:12:59 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:12,477,198
INFO 2026-06-08 09:12:59 MarkDuplicates Tracking 914810 as yet unmatched pairs. 80674 records in RAM.
INFO 2026-06-08 09:13:01 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:21,048,882
INFO 2026-06-08 09:13:01 MarkDuplicates Tracking 911620 as yet unmatched pairs. 77404 records in RAM.
INFO 2026-06-08 09:13:02 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:31,981,642
INFO 2026-06-08 09:13:02 MarkDuplicates Tracking 908445 as yet unmatched pairs. 74181 records in RAM.
INFO 2026-06-08 09:13:04 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:47,793,447
INFO 2026-06-08 09:13:04 MarkDuplicates Tracking 906707 as yet unmatched pairs. 72375 records in RAM.
INFO 2026-06-08 09:13:06 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:49,042,148
INFO 2026-06-08 09:13:06 MarkDuplicates Tracking 902676 as yet unmatched pairs. 68278 records in RAM.
INFO 2026-06-08 09:13:07 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:49,707,117
INFO 2026-06-08 09:13:07 MarkDuplicates Tracking 899719 as yet unmatched pairs. 65295 records in RAM.
INFO 2026-06-08 09:13:09 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:52,173,040
INFO 2026-06-08 09:13:09 MarkDuplicates Tracking 896699 as yet unmatched pairs. 62218 records in RAM.
INFO 2026-06-08 09:13:12 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr12:53,059,225
INFO 2026-06-08 09:13:12 MarkDuplicates Tracking 893722 as yet unmatched pairs. 59178 records in RAM.
INFO 2026-06-08 09:13:15 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 2s. Last read position: chr12:53,724,690
INFO 2026-06-08 09:13:15 MarkDuplicates Tracking 890606 as yet unmatched pairs. 56020 records in RAM.
INFO 2026-06-08 09:13:17 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:56,080,286
INFO 2026-06-08 09:13:17 MarkDuplicates Tracking 889322 as yet unmatched pairs. 54691 records in RAM.
INFO 2026-06-08 09:13:18 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr12:56,326,624
INFO 2026-06-08 09:13:18 MarkDuplicates Tracking 885318 as yet unmatched pairs. 50659 records in RAM.
INFO 2026-06-08 09:13:20 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:57,094,653
INFO 2026-06-08 09:13:20 MarkDuplicates Tracking 883589 as yet unmatched pairs. 48867 records in RAM.
INFO 2026-06-08 09:13:22 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:57,166,184
INFO 2026-06-08 09:13:22 MarkDuplicates Tracking 880055 as yet unmatched pairs. 45296 records in RAM.
INFO 2026-06-08 09:13:23 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr12:57,527,001
INFO 2026-06-08 09:13:23 MarkDuplicates Tracking 875693 as yet unmatched pairs. 40860 records in RAM.
INFO 2026-06-08 09:13:25 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr12:66,250,554
INFO 2026-06-08 09:13:25 MarkDuplicates Tracking 872186 as yet unmatched pairs. 37286 records in RAM.
INFO 2026-06-08 09:13:27 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr12:76,030,959
INFO 2026-06-08 09:13:27 MarkDuplicates Tracking 870521 as yet unmatched pairs. 35564 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr12:95,002,766
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 866412 as yet unmatched pairs. 31388 records in RAM.
INFO 2026-06-08 09:13:31 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 2s. Last read position: chr12:103,989,549
INFO 2026-06-08 09:13:31 MarkDuplicates Tracking 863616 as yet unmatched pairs. 28560 records in RAM.
INFO 2026-06-08 09:13:33 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr12:109,932,972
INFO 2026-06-08 09:13:33 MarkDuplicates Tracking 860597 as yet unmatched pairs. 25479 records in RAM.
INFO 2026-06-08 09:13:35 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr12:112,248,446
INFO 2026-06-08 09:13:35 MarkDuplicates Tracking 857858 as yet unmatched pairs. 22685 records in RAM.
INFO 2026-06-08 09:13:36 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr12:115,997,200
INFO 2026-06-08 09:13:36 MarkDuplicates Tracking 854538 as yet unmatched pairs. 19296 records in RAM.
INFO 2026-06-08 09:13:38 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr12:120,219,341
INFO 2026-06-08 09:13:38 MarkDuplicates Tracking 852384 as yet unmatched pairs. 17094 records in RAM.
INFO 2026-06-08 09:13:40 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr12:122,127,928
INFO 2026-06-08 09:13:40 MarkDuplicates Tracking 848339 as yet unmatched pairs. 12991 records in RAM.
INFO 2026-06-08 09:13:42 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr12:123,621,910
INFO 2026-06-08 09:13:42 MarkDuplicates Tracking 844607 as yet unmatched pairs. 9201 records in RAM.
INFO 2026-06-08 09:13:43 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr12:130,399,720
INFO 2026-06-08 09:13:43 MarkDuplicates Tracking 841115 as yet unmatched pairs. 5653 records in RAM.
INFO 2026-06-08 09:13:45 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:132,668,730
INFO 2026-06-08 09:13:45 MarkDuplicates Tracking 837710 as yet unmatched pairs. 2193 records in RAM.
INFO 2026-06-08 09:13:48 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 3s. Last read position: chr13:20,059,551
INFO 2026-06-08 09:13:48 MarkDuplicates Tracking 838891 as yet unmatched pairs. 31362 records in RAM.
INFO 2026-06-08 09:13:50 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr13:27,427,122
INFO 2026-06-08 09:13:50 MarkDuplicates Tracking 831909 as yet unmatched pairs. 24324 records in RAM.
INFO 2026-06-08 09:13:52 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr13:37,590,447
INFO 2026-06-08 09:13:52 MarkDuplicates Tracking 829172 as yet unmatched pairs. 21535 records in RAM.
INFO 2026-06-08 09:13:54 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr13:45,476,242
INFO 2026-06-08 09:13:54 MarkDuplicates Tracking 826075 as yet unmatched pairs. 18370 records in RAM.
INFO 2026-06-08 09:13:55 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr13:52,151,384
INFO 2026-06-08 09:13:55 MarkDuplicates Tracking 823197 as yet unmatched pairs. 15395 records in RAM.
INFO 2026-06-08 09:13:57 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr13:77,180,187
INFO 2026-06-08 09:13:57 MarkDuplicates Tracking 820596 as yet unmatched pairs. 12735 records in RAM.
INFO 2026-06-08 09:13:59 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr13:99,562,691
INFO 2026-06-08 09:13:59 MarkDuplicates Tracking 817198 as yet unmatched pairs. 9286 records in RAM.
INFO 2026-06-08 09:14:01 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr13:110,478,032
INFO 2026-06-08 09:14:01 MarkDuplicates Tracking 813718 as yet unmatched pairs. 5756 records in RAM.
INFO 2026-06-08 09:14:02 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr13:113,640,150
INFO 2026-06-08 09:14:02 MarkDuplicates Tracking 809744 as yet unmatched pairs. 1702 records in RAM.
INFO 2026-06-08 09:14:05 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr14:21,092,349
INFO 2026-06-08 09:14:05 MarkDuplicates Tracking 806734 as yet unmatched pairs. 63513 records in RAM.
INFO 2026-06-08 09:14:07 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr14:23,054,601
INFO 2026-06-08 09:14:07 MarkDuplicates Tracking 803165 as yet unmatched pairs. 59886 records in RAM.
INFO 2026-06-08 09:14:09 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr14:24,163,431
INFO 2026-06-08 09:14:09 MarkDuplicates Tracking 802253 as yet unmatched pairs. 58944 records in RAM.
INFO 2026-06-08 09:14:11 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr14:30,895,531
INFO 2026-06-08 09:14:11 MarkDuplicates Tracking 796190 as yet unmatched pairs. 52856 records in RAM.
INFO 2026-06-08 09:14:13 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr14:39,181,727
INFO 2026-06-08 09:14:13 MarkDuplicates Tracking 793433 as yet unmatched pairs. 50047 records in RAM.
INFO 2026-06-08 09:14:14 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr14:52,314,705
INFO 2026-06-08 09:14:14 MarkDuplicates Tracking 790522 as yet unmatched pairs. 46823 records in RAM.
INFO 2026-06-08 09:14:16 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr14:58,646,996
INFO 2026-06-08 09:14:16 MarkDuplicates Tracking 786971 as yet unmatched pairs. 43204 records in RAM.
INFO 2026-06-08 09:14:18 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr14:64,715,805
INFO 2026-06-08 09:14:18 MarkDuplicates Tracking 784989 as yet unmatched pairs. 41195 records in RAM.
INFO 2026-06-08 09:14:20 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr14:68,893,712
INFO 2026-06-08 09:14:20 MarkDuplicates Tracking 782603 as yet unmatched pairs. 38762 records in RAM.
INFO 2026-06-08 09:14:21 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr14:73,279,284
INFO 2026-06-08 09:14:21 MarkDuplicates Tracking 777899 as yet unmatched pairs. 34000 records in RAM.
INFO 2026-06-08 09:14:23 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr14:75,279,932
INFO 2026-06-08 09:14:23 MarkDuplicates Tracking 784533 as yet unmatched pairs. 40600 records in RAM.
INFO 2026-06-08 09:14:25 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr14:90,312,478
INFO 2026-06-08 09:14:25 MarkDuplicates Tracking 771563 as yet unmatched pairs. 27585 records in RAM.
INFO 2026-06-08 09:14:27 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 2s. Last read position: chr14:94,110,786
INFO 2026-06-08 09:14:27 MarkDuplicates Tracking 770675 as yet unmatched pairs. 26652 records in RAM.
INFO 2026-06-08 09:14:29 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr14:100,884,049
INFO 2026-06-08 09:14:29 MarkDuplicates Tracking 764608 as yet unmatched pairs. 20538 records in RAM.
INFO 2026-06-08 09:14:30 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr14:102,339,130
INFO 2026-06-08 09:14:30 MarkDuplicates Tracking 761933 as yet unmatched pairs. 17844 records in RAM.
INFO 2026-06-08 09:14:33 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 2s. Last read position: chr14:103,684,845
INFO 2026-06-08 09:14:33 MarkDuplicates Tracking 758423 as yet unmatched pairs. 14286 records in RAM.
INFO 2026-06-08 09:14:37 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 3s. Last read position: chr14:104,886,819
INFO 2026-06-08 09:14:37 MarkDuplicates Tracking 755554 as yet unmatched pairs. 11374 records in RAM.
INFO 2026-06-08 09:14:39 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr14:104,948,216
INFO 2026-06-08 09:14:39 MarkDuplicates Tracking 755397 as yet unmatched pairs. 11199 records in RAM.
INFO 2026-06-08 09:14:40 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr14:105,492,231
INFO 2026-06-08 09:14:40 MarkDuplicates Tracking 748033 as yet unmatched pairs. 3798 records in RAM.
INFO 2026-06-08 09:14:42 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,887
INFO 2026-06-08 09:14:42 MarkDuplicates Tracking 752518 as yet unmatched pairs. 8272 records in RAM.
INFO 2026-06-08 09:14:44 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr15:28,263,021
INFO 2026-06-08 09:14:44 MarkDuplicates Tracking 742881 as yet unmatched pairs. 55219 records in RAM.
INFO 2026-06-08 09:14:46 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr15:33,067,541
INFO 2026-06-08 09:14:46 MarkDuplicates Tracking 740079 as yet unmatched pairs. 52388 records in RAM.
INFO 2026-06-08 09:14:48 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr15:40,292,135
INFO 2026-06-08 09:14:48 MarkDuplicates Tracking 737345 as yet unmatched pairs. 49624 records in RAM.
INFO 2026-06-08 09:14:49 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr15:41,711,340
INFO 2026-06-08 09:14:49 MarkDuplicates Tracking 734309 as yet unmatched pairs. 46549 records in RAM.
INFO 2026-06-08 09:14:51 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr15:43,024,883
INFO 2026-06-08 09:14:51 MarkDuplicates Tracking 730595 as yet unmatched pairs. 42811 records in RAM.
INFO 2026-06-08 09:14:53 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,761
INFO 2026-06-08 09:14:53 MarkDuplicates Tracking 736660 as yet unmatched pairs. 48849 records in RAM.
INFO 2026-06-08 09:14:55 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr15:50,611,060
INFO 2026-06-08 09:14:55 MarkDuplicates Tracking 725135 as yet unmatched pairs. 37271 records in RAM.
INFO 2026-06-08 09:14:56 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr15:57,262,142
INFO 2026-06-08 09:14:56 MarkDuplicates Tracking 725469 as yet unmatched pairs. 37572 records in RAM.
INFO 2026-06-08 09:14:58 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr15:62,164,303
INFO 2026-06-08 09:14:58 MarkDuplicates Tracking 719103 as yet unmatched pairs. 31138 records in RAM.
INFO 2026-06-08 09:15:00 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr15:64,675,569
INFO 2026-06-08 09:15:00 MarkDuplicates Tracking 716134 as yet unmatched pairs. 28125 records in RAM.
INFO 2026-06-08 09:15:01 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr15:69,453,646
INFO 2026-06-08 09:15:01 MarkDuplicates Tracking 716593 as yet unmatched pairs. 28558 records in RAM.
INFO 2026-06-08 09:15:03 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr15:73,702,908
INFO 2026-06-08 09:15:03 MarkDuplicates Tracking 711913 as yet unmatched pairs. 23852 records in RAM.
INFO 2026-06-08 09:15:05 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr15:75,207,198
INFO 2026-06-08 09:15:05 MarkDuplicates Tracking 707107 as yet unmatched pairs. 18997 records in RAM.
INFO 2026-06-08 09:15:06 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr15:78,012,910
INFO 2026-06-08 09:15:06 MarkDuplicates Tracking 703321 as yet unmatched pairs. 15154 records in RAM.
INFO 2026-06-08 09:15:08 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr15:83,041,912
INFO 2026-06-08 09:15:08 MarkDuplicates Tracking 699917 as yet unmatched pairs. 11718 records in RAM.
INFO 2026-06-08 09:15:10 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr15:88,856,638
INFO 2026-06-08 09:15:10 MarkDuplicates Tracking 697393 as yet unmatched pairs. 9161 records in RAM.
INFO 2026-06-08 09:15:13 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr15:90,230,476
INFO 2026-06-08 09:15:13 MarkDuplicates Tracking 697452 as yet unmatched pairs. 9195 records in RAM.
INFO 2026-06-08 09:15:16 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 3s. Last read position: chr15:98,899,537
INFO 2026-06-08 09:15:16 MarkDuplicates Tracking 690763 as yet unmatched pairs. 2450 records in RAM.
INFO 2026-06-08 09:15:19 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr16:269,206
INFO 2026-06-08 09:15:19 MarkDuplicates Tracking 688735 as yet unmatched pairs. 117840 records in RAM.
INFO 2026-06-08 09:15:20 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:651,943
INFO 2026-06-08 09:15:20 MarkDuplicates Tracking 683673 as yet unmatched pairs. 112724 records in RAM.
INFO 2026-06-08 09:15:22 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:768,699
INFO 2026-06-08 09:15:22 MarkDuplicates Tracking 682974 as yet unmatched pairs. 112010 records in RAM.
INFO 2026-06-08 09:15:24 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:1,762,836
INFO 2026-06-08 09:15:24 MarkDuplicates Tracking 676613 as yet unmatched pairs. 105632 records in RAM.
INFO 2026-06-08 09:15:26 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:2,089,740
INFO 2026-06-08 09:15:26 MarkDuplicates Tracking 672047 as yet unmatched pairs. 101035 records in RAM.
INFO 2026-06-08 09:15:28 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:2,244,462
INFO 2026-06-08 09:15:28 MarkDuplicates Tracking 668216 as yet unmatched pairs. 97190 records in RAM.
INFO 2026-06-08 09:15:29 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:2,764,533
INFO 2026-06-08 09:15:29 MarkDuplicates Tracking 666307 as yet unmatched pairs. 95257 records in RAM.
INFO 2026-06-08 09:15:31 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:2,929,748
INFO 2026-06-08 09:15:31 MarkDuplicates Tracking 661202 as yet unmatched pairs. 90135 records in RAM.
INFO 2026-06-08 09:15:33 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:3,676,101
INFO 2026-06-08 09:15:33 MarkDuplicates Tracking 657216 as yet unmatched pairs. 86132 records in RAM.
INFO 2026-06-08 09:15:34 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr16:5,027,991
INFO 2026-06-08 09:15:34 MarkDuplicates Tracking 653045 as yet unmatched pairs. 81917 records in RAM.
INFO 2026-06-08 09:15:36 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr16:14,716,126
INFO 2026-06-08 09:15:36 MarkDuplicates Tracking 649699 as yet unmatched pairs. 78531 records in RAM.
INFO 2026-06-08 09:15:37 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr16:15,104,408
INFO 2026-06-08 09:15:37 MarkDuplicates Tracking 648476 as yet unmatched pairs. 77291 records in RAM.
INFO 2026-06-08 09:15:39 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr16:16,232,658
INFO 2026-06-08 09:15:39 MarkDuplicates Tracking 645547 as yet unmatched pairs. 74327 records in RAM.
INFO 2026-06-08 09:15:40 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr16:16,360,784
INFO 2026-06-08 09:15:40 MarkDuplicates Tracking 644966 as yet unmatched pairs. 73746 records in RAM.
INFO 2026-06-08 09:15:41 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr16:18,379,161
INFO 2026-06-08 09:15:41 MarkDuplicates Tracking 643969 as yet unmatched pairs. 72719 records in RAM.
INFO 2026-06-08 09:15:43 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr16:19,114,571
INFO 2026-06-08 09:15:43 MarkDuplicates Tracking 642388 as yet unmatched pairs. 71122 records in RAM.
INFO 2026-06-08 09:15:44 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:21,414,919
INFO 2026-06-08 09:15:44 MarkDuplicates Tracking 640543 as yet unmatched pairs. 69257 records in RAM.
INFO 2026-06-08 09:15:46 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr16:21,851,075
INFO 2026-06-08 09:15:46 MarkDuplicates Tracking 638994 as yet unmatched pairs. 67697 records in RAM.
INFO 2026-06-08 09:15:47 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,218
INFO 2026-06-08 09:15:47 MarkDuplicates Tracking 636723 as yet unmatched pairs. 65412 records in RAM.
INFO 2026-06-08 09:15:49 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr16:24,790,932
INFO 2026-06-08 09:15:49 MarkDuplicates Tracking 634428 as yet unmatched pairs. 63092 records in RAM.
INFO 2026-06-08 09:15:50 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr16:28,731,979
INFO 2026-06-08 09:15:50 MarkDuplicates Tracking 631760 as yet unmatched pairs. 60392 records in RAM.
INFO 2026-06-08 09:15:52 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr16:29,390,216
INFO 2026-06-08 09:15:52 MarkDuplicates Tracking 631177 as yet unmatched pairs. 59792 records in RAM.
INFO 2026-06-08 09:15:53 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr16:29,790,770
INFO 2026-06-08 09:15:53 MarkDuplicates Tracking 628684 as yet unmatched pairs. 57287 records in RAM.
INFO 2026-06-08 09:15:55 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr16:30,005,332
INFO 2026-06-08 09:15:55 MarkDuplicates Tracking 624642 as yet unmatched pairs. 53204 records in RAM.
INFO 2026-06-08 09:15:56 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,255
INFO 2026-06-08 09:15:56 MarkDuplicates Tracking 622129 as yet unmatched pairs. 50681 records in RAM.
INFO 2026-06-08 09:15:58 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr16:30,712,804
INFO 2026-06-08 09:15:58 MarkDuplicates Tracking 619302 as yet unmatched pairs. 47839 records in RAM.
INFO 2026-06-08 09:16:00 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 2s. Last read position: chr16:31,182,534
INFO 2026-06-08 09:16:00 MarkDuplicates Tracking 618922 as yet unmatched pairs. 47425 records in RAM.
INFO 2026-06-08 09:16:03 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 2s. Last read position: chr16:48,270,046
INFO 2026-06-08 09:16:03 MarkDuplicates Tracking 613142 as yet unmatched pairs. 41632 records in RAM.
INFO 2026-06-08 09:16:06 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 2s. Last read position: chr16:56,830,670
INFO 2026-06-08 09:16:06 MarkDuplicates Tracking 609605 as yet unmatched pairs. 38069 records in RAM.
INFO 2026-06-08 09:16:08 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr16:58,516,478
INFO 2026-06-08 09:16:08 MarkDuplicates Tracking 606297 as yet unmatched pairs. 34724 records in RAM.
INFO 2026-06-08 09:16:09 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr16:67,180,537
INFO 2026-06-08 09:16:09 MarkDuplicates Tracking 603131 as yet unmatched pairs. 31520 records in RAM.
INFO 2026-06-08 09:16:11 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr16:67,936,175
INFO 2026-06-08 09:16:11 MarkDuplicates Tracking 599541 as yet unmatched pairs. 27908 records in RAM.
INFO 2026-06-08 09:16:12 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr16:69,691,761
INFO 2026-06-08 09:16:12 MarkDuplicates Tracking 595951 as yet unmatched pairs. 24272 records in RAM.
INFO 2026-06-08 09:16:14 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr16:70,680,801
INFO 2026-06-08 09:16:14 MarkDuplicates Tracking 593073 as yet unmatched pairs. 21350 records in RAM.
INFO 2026-06-08 09:16:16 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr16:74,942,798
INFO 2026-06-08 09:16:16 MarkDuplicates Tracking 589925 as yet unmatched pairs. 18160 records in RAM.
INFO 2026-06-08 09:16:17 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr16:84,181,574
INFO 2026-06-08 09:16:17 MarkDuplicates Tracking 586992 as yet unmatched pairs. 15184 records in RAM.
INFO 2026-06-08 09:16:19 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr16:87,709,341
INFO 2026-06-08 09:16:19 MarkDuplicates Tracking 583393 as yet unmatched pairs. 11543 records in RAM.
INFO 2026-06-08 09:16:21 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr16:88,737,617
INFO 2026-06-08 09:16:21 MarkDuplicates Tracking 579530 as yet unmatched pairs. 7636 records in RAM.
INFO 2026-06-08 09:16:22 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr16:89,691,821
INFO 2026-06-08 09:16:22 MarkDuplicates Tracking 575381 as yet unmatched pairs. 3449 records in RAM.
INFO 2026-06-08 09:16:25 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 3s. Last read position: chr17:782,459
INFO 2026-06-08 09:16:25 MarkDuplicates Tracking 571306 as yet unmatched pairs. 202298 records in RAM.
INFO 2026-06-08 09:16:27 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr17:1,677,051
INFO 2026-06-08 09:16:27 MarkDuplicates Tracking 568399 as yet unmatched pairs. 199358 records in RAM.
INFO 2026-06-08 09:16:29 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr17:3,610,924
INFO 2026-06-08 09:16:29 MarkDuplicates Tracking 564541 as yet unmatched pairs. 195487 records in RAM.
INFO 2026-06-08 09:16:31 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr17:4,674,828
INFO 2026-06-08 09:16:31 MarkDuplicates Tracking 561263 as yet unmatched pairs. 192174 records in RAM.
INFO 2026-06-08 09:16:33 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr17:5,282,502
INFO 2026-06-08 09:16:33 MarkDuplicates Tracking 558049 as yet unmatched pairs. 188921 records in RAM.
INFO 2026-06-08 09:16:34 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr17:7,260,402
INFO 2026-06-08 09:16:34 MarkDuplicates Tracking 555221 as yet unmatched pairs. 186083 records in RAM.
INFO 2026-06-08 09:16:36 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr17:7,560,466
INFO 2026-06-08 09:16:36 MarkDuplicates Tracking 551484 as yet unmatched pairs. 182335 records in RAM.
INFO 2026-06-08 09:16:38 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr17:8,189,385
INFO 2026-06-08 09:16:38 MarkDuplicates Tracking 548124 as yet unmatched pairs. 178970 records in RAM.
INFO 2026-06-08 09:16:40 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 2s. Last read position: chr17:16,101,558
INFO 2026-06-08 09:16:40 MarkDuplicates Tracking 546608 as yet unmatched pairs. 177422 records in RAM.
INFO 2026-06-08 09:16:42 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr17:17,809,414
INFO 2026-06-08 09:16:42 MarkDuplicates Tracking 541729 as yet unmatched pairs. 172523 records in RAM.
INFO 2026-06-08 09:16:44 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: chr17:19,380,849
INFO 2026-06-08 09:16:44 MarkDuplicates Tracking 538549 as yet unmatched pairs. 169313 records in RAM.
INFO 2026-06-08 09:16:46 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 1s. Last read position: chr17:28,632,942
INFO 2026-06-08 09:16:46 MarkDuplicates Tracking 536110 as yet unmatched pairs. 166841 records in RAM.
INFO 2026-06-08 09:16:48 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr17:29,498,414
INFO 2026-06-08 09:16:48 MarkDuplicates Tracking 531976 as yet unmatched pairs. 162682 records in RAM.
INFO 2026-06-08 09:16:49 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 1s. Last read position: chr17:32,360,923
INFO 2026-06-08 09:16:49 MarkDuplicates Tracking 530781 as yet unmatched pairs. 161458 records in RAM.
INFO 2026-06-08 09:16:51 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 1s. Last read position: chr17:36,310,684
INFO 2026-06-08 09:16:51 MarkDuplicates Tracking 525523 as yet unmatched pairs. 156172 records in RAM.
INFO 2026-06-08 09:16:52 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr17:38,011,510
INFO 2026-06-08 09:16:52 MarkDuplicates Tracking 524188 as yet unmatched pairs. 154829 records in RAM.
INFO 2026-06-08 09:16:54 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr17:38,852,685
INFO 2026-06-08 09:16:54 MarkDuplicates Tracking 521973 as yet unmatched pairs. 152589 records in RAM.
INFO 2026-06-08 09:16:55 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,267
INFO 2026-06-08 09:16:55 MarkDuplicates Tracking 524203 as yet unmatched pairs. 154798 records in RAM.
INFO 2026-06-08 09:16:57 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr17:39,906,161
INFO 2026-06-08 09:16:57 MarkDuplicates Tracking 515434 as yet unmatched pairs. 146027 records in RAM.
INFO 2026-06-08 09:16:59 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr17:41,523,862
INFO 2026-06-08 09:16:59 MarkDuplicates Tracking 514243 as yet unmatched pairs. 144822 records in RAM.
INFO 2026-06-08 09:17:01 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 1s. Last read position: chr17:42,102,218
INFO 2026-06-08 09:17:01 MarkDuplicates Tracking 508100 as yet unmatched pairs. 138658 records in RAM.
INFO 2026-06-08 09:17:04 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 2s. Last read position: chr17:42,979,493
INFO 2026-06-08 09:17:04 MarkDuplicates Tracking 504628 as yet unmatched pairs. 135151 records in RAM.
INFO 2026-06-08 09:17:05 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 1s. Last read position: chr17:44,350,236
INFO 2026-06-08 09:17:05 MarkDuplicates Tracking 503990 as yet unmatched pairs. 134507 records in RAM.
INFO 2026-06-08 09:17:07 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 1s. Last read position: chr17:45,468,420
INFO 2026-06-08 09:17:07 MarkDuplicates Tracking 498558 as yet unmatched pairs. 129037 records in RAM.
INFO 2026-06-08 09:17:09 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 1s. Last read position: chr17:47,531,338
INFO 2026-06-08 09:17:09 MarkDuplicates Tracking 497086 as yet unmatched pairs. 127543 records in RAM.
INFO 2026-06-08 09:17:10 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 1s. Last read position: chr17:48,622,756
INFO 2026-06-08 09:17:10 MarkDuplicates Tracking 492526 as yet unmatched pairs. 122949 records in RAM.
INFO 2026-06-08 09:17:12 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,399
INFO 2026-06-08 09:17:12 MarkDuplicates Tracking 498732 as yet unmatched pairs. 129125 records in RAM.
INFO 2026-06-08 09:17:14 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,532
INFO 2026-06-08 09:17:14 MarkDuplicates Tracking 553547 as yet unmatched pairs. 183932 records in RAM.
INFO 2026-06-08 09:17:16 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,533
INFO 2026-06-08 09:17:16 MarkDuplicates Tracking 551320 as yet unmatched pairs. 181696 records in RAM.
INFO 2026-06-08 09:17:17 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,922
INFO 2026-06-08 09:17:17 MarkDuplicates Tracking 541051 as yet unmatched pairs. 171424 records in RAM.
INFO 2026-06-08 09:17:19 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,438
INFO 2026-06-08 09:17:19 MarkDuplicates Tracking 552925 as yet unmatched pairs. 183289 records in RAM.
INFO 2026-06-08 09:17:21 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,000
INFO 2026-06-08 09:17:21 MarkDuplicates Tracking 536220 as yet unmatched pairs. 166578 records in RAM.
INFO 2026-06-08 09:17:23 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,543
INFO 2026-06-08 09:17:23 MarkDuplicates Tracking 536920 as yet unmatched pairs. 167242 records in RAM.
INFO 2026-06-08 09:17:25 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,480
INFO 2026-06-08 09:17:25 MarkDuplicates Tracking 538153 as yet unmatched pairs. 168455 records in RAM.
INFO 2026-06-08 09:17:27 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,513
INFO 2026-06-08 09:17:27 MarkDuplicates Tracking 541979 as yet unmatched pairs. 172260 records in RAM.
INFO 2026-06-08 09:17:29 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,013
INFO 2026-06-08 09:17:29 MarkDuplicates Tracking 559172 as yet unmatched pairs. 189442 records in RAM.
INFO 2026-06-08 09:18:27 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 57s. Last read position: chr17:50,194,148
INFO 2026-06-08 09:18:27 MarkDuplicates Tracking 583884 as yet unmatched pairs. 214149 records in RAM.
INFO 2026-06-08 09:19:39 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 71s. Last read position: chr17:50,194,609
INFO 2026-06-08 09:19:39 MarkDuplicates Tracking 525524 as yet unmatched pairs. 155777 records in RAM.
INFO 2026-06-08 09:19:41 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,275
INFO 2026-06-08 09:19:41 MarkDuplicates Tracking 539708 as yet unmatched pairs. 169950 records in RAM.
INFO 2026-06-08 09:19:43 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,635
INFO 2026-06-08 09:19:43 MarkDuplicates Tracking 570256 as yet unmatched pairs. 200483 records in RAM.
INFO 2026-06-08 09:19:44 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,180
INFO 2026-06-08 09:19:44 MarkDuplicates Tracking 574270 as yet unmatched pairs. 204497 records in RAM.
INFO 2026-06-08 09:19:46 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,621
INFO 2026-06-08 09:19:46 MarkDuplicates Tracking 544311 as yet unmatched pairs. 174518 records in RAM.
INFO 2026-06-08 09:19:48 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,223
INFO 2026-06-08 09:19:48 MarkDuplicates Tracking 552832 as yet unmatched pairs. 183021 records in RAM.
INFO 2026-06-08 09:19:50 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,226
INFO 2026-06-08 09:19:50 MarkDuplicates Tracking 472984 as yet unmatched pairs. 103172 records in RAM.
INFO 2026-06-08 09:19:52 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,929
INFO 2026-06-08 09:19:52 MarkDuplicates Tracking 443342 as yet unmatched pairs. 73510 records in RAM.
INFO 2026-06-08 09:19:54 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr17:51,168,280
INFO 2026-06-08 09:19:54 MarkDuplicates Tracking 428935 as yet unmatched pairs. 59080 records in RAM.
INFO 2026-06-08 09:19:55 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr17:58,358,729
INFO 2026-06-08 09:19:55 MarkDuplicates Tracking 424497 as yet unmatched pairs. 54604 records in RAM.
INFO 2026-06-08 09:19:57 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr17:60,050,870
INFO 2026-06-08 09:19:57 MarkDuplicates Tracking 419915 as yet unmatched pairs. 50011 records in RAM.
INFO 2026-06-08 09:19:59 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr17:63,834,200
INFO 2026-06-08 09:19:59 MarkDuplicates Tracking 417340 as yet unmatched pairs. 47417 records in RAM.
INFO 2026-06-08 09:20:01 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr17:67,195,450
INFO 2026-06-08 09:20:01 MarkDuplicates Tracking 414405 as yet unmatched pairs. 44454 records in RAM.
INFO 2026-06-08 09:20:02 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr17:74,209,246
INFO 2026-06-08 09:20:02 MarkDuplicates Tracking 410956 as yet unmatched pairs. 40979 records in RAM.
INFO 2026-06-08 09:20:04 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr17:75,522,094
INFO 2026-06-08 09:20:04 MarkDuplicates Tracking 408687 as yet unmatched pairs. 38674 records in RAM.
INFO 2026-06-08 09:20:05 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr17:75,736,072
INFO 2026-06-08 09:20:05 MarkDuplicates Tracking 406062 as yet unmatched pairs. 36036 records in RAM.
INFO 2026-06-08 09:20:07 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr17:76,081,823
INFO 2026-06-08 09:20:07 MarkDuplicates Tracking 399810 as yet unmatched pairs. 29767 records in RAM.
INFO 2026-06-08 09:20:09 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 2s. Last read position: chr17:78,125,766
INFO 2026-06-08 09:20:09 MarkDuplicates Tracking 397188 as yet unmatched pairs. 27111 records in RAM.
INFO 2026-06-08 09:20:11 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr17:78,997,448
INFO 2026-06-08 09:20:11 MarkDuplicates Tracking 394314 as yet unmatched pairs. 24209 records in RAM.
INFO 2026-06-08 09:20:13 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 2s. Last read position: chr17:80,339,728
INFO 2026-06-08 09:20:13 MarkDuplicates Tracking 392891 as yet unmatched pairs. 22764 records in RAM.
INFO 2026-06-08 09:20:15 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 2s. Last read position: chr17:81,120,873
INFO 2026-06-08 09:20:15 MarkDuplicates Tracking 386105 as yet unmatched pairs. 15970 records in RAM.
INFO 2026-06-08 09:20:18 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 2s. Last read position: chr17:81,670,337
INFO 2026-06-08 09:20:18 MarkDuplicates Tracking 381397 as yet unmatched pairs. 11241 records in RAM.
INFO 2026-06-08 09:20:19 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr17:81,934,413
INFO 2026-06-08 09:20:19 MarkDuplicates Tracking 379514 as yet unmatched pairs. 9345 records in RAM.
INFO 2026-06-08 09:20:21 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr17:82,089,143
INFO 2026-06-08 09:20:21 MarkDuplicates Tracking 375564 as yet unmatched pairs. 5352 records in RAM.
INFO 2026-06-08 09:20:22 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr17:82,937,334
INFO 2026-06-08 09:20:22 MarkDuplicates Tracking 371339 as yet unmatched pairs. 1094 records in RAM.
INFO 2026-06-08 09:20:24 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr18:10,471,632
INFO 2026-06-08 09:20:24 MarkDuplicates Tracking 367308 as yet unmatched pairs. 15684 records in RAM.
INFO 2026-06-08 09:20:25 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr18:26,038,658
INFO 2026-06-08 09:20:25 MarkDuplicates Tracking 365180 as yet unmatched pairs. 13532 records in RAM.
INFO 2026-06-08 09:20:27 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr18:46,216,026
INFO 2026-06-08 09:20:27 MarkDuplicates Tracking 361618 as yet unmatched pairs. 9965 records in RAM.
INFO 2026-06-08 09:20:29 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr18:57,615,820
INFO 2026-06-08 09:20:29 MarkDuplicates Tracking 358259 as yet unmatched pairs. 6564 records in RAM.
INFO 2026-06-08 09:20:30 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr18:66,509,043
INFO 2026-06-08 09:20:30 MarkDuplicates Tracking 354530 as yet unmatched pairs. 2809 records in RAM.
INFO 2026-06-08 09:20:33 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 2s. Last read position: chr19:572,633
INFO 2026-06-08 09:20:33 MarkDuplicates Tracking 358298 as yet unmatched pairs. 176044 records in RAM.
INFO 2026-06-08 09:20:35 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:860,877
INFO 2026-06-08 09:20:35 MarkDuplicates Tracking 348762 as yet unmatched pairs. 166499 records in RAM.
INFO 2026-06-08 09:20:37 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:1,207,026
INFO 2026-06-08 09:20:37 MarkDuplicates Tracking 344044 as yet unmatched pairs. 161772 records in RAM.
INFO 2026-06-08 09:20:38 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr19:1,556,326
INFO 2026-06-08 09:20:38 MarkDuplicates Tracking 339446 as yet unmatched pairs. 157151 records in RAM.
INFO 2026-06-08 09:20:41 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 2s. Last read position: chr19:2,138,647
INFO 2026-06-08 09:20:41 MarkDuplicates Tracking 335559 as yet unmatched pairs. 153262 records in RAM.
INFO 2026-06-08 09:20:43 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr19:3,013,750
INFO 2026-06-08 09:20:43 MarkDuplicates Tracking 331893 as yet unmatched pairs. 149591 records in RAM.
INFO 2026-06-08 09:20:45 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:4,054,106
INFO 2026-06-08 09:20:45 MarkDuplicates Tracking 327969 as yet unmatched pairs. 145654 records in RAM.
INFO 2026-06-08 09:20:47 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr19:5,110,629
INFO 2026-06-08 09:20:47 MarkDuplicates Tracking 323973 as yet unmatched pairs. 141655 records in RAM.
INFO 2026-06-08 09:20:48 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:5,844,729
INFO 2026-06-08 09:20:48 MarkDuplicates Tracking 321217 as yet unmatched pairs. 138894 records in RAM.
INFO 2026-06-08 09:20:50 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:7,372,983
INFO 2026-06-08 09:20:50 MarkDuplicates Tracking 316048 as yet unmatched pairs. 133716 records in RAM.
INFO 2026-06-08 09:20:51 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr19:8,485,913
INFO 2026-06-08 09:20:51 MarkDuplicates Tracking 317351 as yet unmatched pairs. 135017 records in RAM.
INFO 2026-06-08 09:20:53 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:10,321,155
INFO 2026-06-08 09:20:53 MarkDuplicates Tracking 309524 as yet unmatched pairs. 127188 records in RAM.
INFO 2026-06-08 09:20:55 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr19:10,830,996
INFO 2026-06-08 09:20:55 MarkDuplicates Tracking 307816 as yet unmatched pairs. 125476 records in RAM.
INFO 2026-06-08 09:20:56 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr19:11,442,484
INFO 2026-06-08 09:20:56 MarkDuplicates Tracking 303313 as yet unmatched pairs. 120967 records in RAM.
INFO 2026-06-08 09:20:58 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr19:12,792,634
INFO 2026-06-08 09:20:58 MarkDuplicates Tracking 300177 as yet unmatched pairs. 117820 records in RAM.
INFO 2026-06-08 09:20:59 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr19:13,920,653
INFO 2026-06-08 09:20:59 MarkDuplicates Tracking 294792 as yet unmatched pairs. 112421 records in RAM.
INFO 2026-06-08 09:21:01 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,770
INFO 2026-06-08 09:21:01 MarkDuplicates Tracking 302678 as yet unmatched pairs. 120287 records in RAM.
INFO 2026-06-08 09:21:02 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr19:15,264,500
INFO 2026-06-08 09:21:02 MarkDuplicates Tracking 290583 as yet unmatched pairs. 108192 records in RAM.
INFO 2026-06-08 09:21:04 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr19:17,102,077
INFO 2026-06-08 09:21:04 MarkDuplicates Tracking 284215 as yet unmatched pairs. 101818 records in RAM.
INFO 2026-06-08 09:21:06 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:17,843,807
INFO 2026-06-08 09:21:06 MarkDuplicates Tracking 279686 as yet unmatched pairs. 97270 records in RAM.
INFO 2026-06-08 09:21:08 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 2s. Last read position: chr19:18,465,465
INFO 2026-06-08 09:21:08 MarkDuplicates Tracking 275839 as yet unmatched pairs. 93411 records in RAM.
INFO 2026-06-08 09:21:10 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr19:19,182,661
INFO 2026-06-08 09:21:10 MarkDuplicates Tracking 272257 as yet unmatched pairs. 89811 records in RAM.
INFO 2026-06-08 09:21:12 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr19:33,205,315
INFO 2026-06-08 09:21:12 MarkDuplicates Tracking 268568 as yet unmatched pairs. 86109 records in RAM.
INFO 2026-06-08 09:21:14 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr19:35,269,121
INFO 2026-06-08 09:21:14 MarkDuplicates Tracking 266340 as yet unmatched pairs. 83864 records in RAM.
INFO 2026-06-08 09:21:15 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr19:36,515,140
INFO 2026-06-08 09:21:15 MarkDuplicates Tracking 260748 as yet unmatched pairs. 78255 records in RAM.
INFO 2026-06-08 09:21:17 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr19:38,801,690
INFO 2026-06-08 09:21:17 MarkDuplicates Tracking 257776 as yet unmatched pairs. 75274 records in RAM.
INFO 2026-06-08 09:21:18 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr19:39,435,646
INFO 2026-06-08 09:21:18 MarkDuplicates Tracking 255057 as yet unmatched pairs. 72552 records in RAM.
INFO 2026-06-08 09:21:20 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr19:39,883,318
INFO 2026-06-08 09:21:20 MarkDuplicates Tracking 258426 as yet unmatched pairs. 75908 records in RAM.
INFO 2026-06-08 09:21:21 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr19:39,896,097
INFO 2026-06-08 09:21:21 MarkDuplicates Tracking 251518 as yet unmatched pairs. 68995 records in RAM.
INFO 2026-06-08 09:21:23 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr19:40,235,146
INFO 2026-06-08 09:21:23 MarkDuplicates Tracking 250417 as yet unmatched pairs. 67887 records in RAM.
INFO 2026-06-08 09:21:24 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr19:40,739,364
INFO 2026-06-08 09:21:24 MarkDuplicates Tracking 241575 as yet unmatched pairs. 59043 records in RAM.
INFO 2026-06-08 09:21:26 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr19:41,897,872
INFO 2026-06-08 09:21:26 MarkDuplicates Tracking 239441 as yet unmatched pairs. 56908 records in RAM.
INFO 2026-06-08 09:21:28 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr19:42,288,933
INFO 2026-06-08 09:21:28 MarkDuplicates Tracking 235111 as yet unmatched pairs. 52577 records in RAM.
INFO 2026-06-08 09:21:29 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr19:43,747,741
INFO 2026-06-08 09:21:29 MarkDuplicates Tracking 231236 as yet unmatched pairs. 48686 records in RAM.
INFO 2026-06-08 09:21:31 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr19:45,382,519
INFO 2026-06-08 09:21:31 MarkDuplicates Tracking 227990 as yet unmatched pairs. 45430 records in RAM.
INFO 2026-06-08 09:21:32 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr19:45,884,651
INFO 2026-06-08 09:21:32 MarkDuplicates Tracking 223385 as yet unmatched pairs. 40822 records in RAM.
INFO 2026-06-08 09:21:34 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr19:47,679,774
INFO 2026-06-08 09:21:34 MarkDuplicates Tracking 219439 as yet unmatched pairs. 36868 records in RAM.
INFO 2026-06-08 09:21:36 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 2s. Last read position: chr19:48,703,607
INFO 2026-06-08 09:21:36 MarkDuplicates Tracking 216318 as yet unmatched pairs. 33743 records in RAM.
INFO 2026-06-08 09:21:38 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr19:49,182,752
INFO 2026-06-08 09:21:38 MarkDuplicates Tracking 214972 as yet unmatched pairs. 32391 records in RAM.
INFO 2026-06-08 09:21:40 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr19:49,635,331
INFO 2026-06-08 09:21:40 MarkDuplicates Tracking 208394 as yet unmatched pairs. 25808 records in RAM.
INFO 2026-06-08 09:21:42 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr19:50,210,375
INFO 2026-06-08 09:21:42 MarkDuplicates Tracking 206760 as yet unmatched pairs. 24150 records in RAM.
INFO 2026-06-08 09:21:43 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr19:51,014,695
INFO 2026-06-08 09:21:43 MarkDuplicates Tracking 201075 as yet unmatched pairs. 18452 records in RAM.
INFO 2026-06-08 09:21:44 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr19:52,929,244
INFO 2026-06-08 09:21:44 MarkDuplicates Tracking 197865 as yet unmatched pairs. 15229 records in RAM.
INFO 2026-06-08 09:21:46 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr19:54,457,836
INFO 2026-06-08 09:21:46 MarkDuplicates Tracking 195507 as yet unmatched pairs. 12865 records in RAM.
INFO 2026-06-08 09:21:48 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr19:55,401,687
INFO 2026-06-08 09:21:48 MarkDuplicates Tracking 191114 as yet unmatched pairs. 8461 records in RAM.
INFO 2026-06-08 09:21:49 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr19:57,704,967
INFO 2026-06-08 09:21:49 MarkDuplicates Tracking 186578 as yet unmatched pairs. 3924 records in RAM.
INFO 2026-06-08 09:21:51 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr19:58,550,471
INFO 2026-06-08 09:21:51 MarkDuplicates Tracking 185648 as yet unmatched pairs. 2989 records in RAM.
INFO 2026-06-08 09:21:53 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr20:3,164,488
INFO 2026-06-08 09:21:53 MarkDuplicates Tracking 180092 as yet unmatched pairs. 47381 records in RAM.
INFO 2026-06-08 09:21:55 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr20:10,413,239
INFO 2026-06-08 09:21:55 MarkDuplicates Tracking 176028 as yet unmatched pairs. 43311 records in RAM.
INFO 2026-06-08 09:21:56 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr20:19,754,455
INFO 2026-06-08 09:21:56 MarkDuplicates Tracking 172700 as yet unmatched pairs. 39982 records in RAM.
INFO 2026-06-08 09:21:57 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chr20:25,274,594
INFO 2026-06-08 09:21:57 MarkDuplicates Tracking 172914 as yet unmatched pairs. 40181 records in RAM.
INFO 2026-06-08 09:21:59 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr20:32,215,278
INFO 2026-06-08 09:21:59 MarkDuplicates Tracking 166444 as yet unmatched pairs. 33705 records in RAM.
INFO 2026-06-08 09:22:01 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chr20:35,271,871
INFO 2026-06-08 09:22:01 MarkDuplicates Tracking 162869 as yet unmatched pairs. 30123 records in RAM.
INFO 2026-06-08 09:22:02 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr20:36,946,762
INFO 2026-06-08 09:22:02 MarkDuplicates Tracking 160160 as yet unmatched pairs. 27404 records in RAM.
INFO 2026-06-08 09:22:05 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 2s. Last read position: chr20:43,463,401
INFO 2026-06-08 09:22:05 MarkDuplicates Tracking 156892 as yet unmatched pairs. 24120 records in RAM.
INFO 2026-06-08 09:22:06 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chr20:46,560,082
INFO 2026-06-08 09:22:06 MarkDuplicates Tracking 153108 as yet unmatched pairs. 20334 records in RAM.
INFO 2026-06-08 09:22:08 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr20:50,892,521
INFO 2026-06-08 09:22:08 MarkDuplicates Tracking 150324 as yet unmatched pairs. 17543 records in RAM.
INFO 2026-06-08 09:22:10 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr20:59,024,456
INFO 2026-06-08 09:22:10 MarkDuplicates Tracking 146360 as yet unmatched pairs. 13558 records in RAM.
INFO 2026-06-08 09:22:11 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr20:62,332,676
INFO 2026-06-08 09:22:11 MarkDuplicates Tracking 143969 as yet unmatched pairs. 11164 records in RAM.
INFO 2026-06-08 09:22:13 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr20:62,962,570
INFO 2026-06-08 09:22:13 MarkDuplicates Tracking 139291 as yet unmatched pairs. 6484 records in RAM.
INFO 2026-06-08 09:22:14 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chr20:63,701,863
INFO 2026-06-08 09:22:14 MarkDuplicates Tracking 135387 as yet unmatched pairs. 2576 records in RAM.
INFO 2026-06-08 09:22:16 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,772
INFO 2026-06-08 09:22:16 MarkDuplicates Tracking 131490 as yet unmatched pairs. 26985 records in RAM.
INFO 2026-06-08 09:22:17 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,524
INFO 2026-06-08 09:22:17 MarkDuplicates Tracking 129518 as yet unmatched pairs. 25006 records in RAM.
INFO 2026-06-08 09:22:19 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chr21:32,337,501
INFO 2026-06-08 09:22:19 MarkDuplicates Tracking 126660 as yet unmatched pairs. 22133 records in RAM.
INFO 2026-06-08 09:22:20 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chr21:36,070,163
INFO 2026-06-08 09:22:20 MarkDuplicates Tracking 123375 as yet unmatched pairs. 18838 records in RAM.
INFO 2026-06-08 09:22:22 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chr21:41,168,327
INFO 2026-06-08 09:22:22 MarkDuplicates Tracking 120171 as yet unmatched pairs. 15629 records in RAM.
INFO 2026-06-08 09:22:23 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr21:42,534,784
INFO 2026-06-08 09:22:23 MarkDuplicates Tracking 116791 as yet unmatched pairs. 12245 records in RAM.
INFO 2026-06-08 09:22:25 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chr21:44,425,689
INFO 2026-06-08 09:22:25 MarkDuplicates Tracking 112940 as yet unmatched pairs. 8386 records in RAM.
INFO 2026-06-08 09:22:27 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chr21:45,997,707
INFO 2026-06-08 09:22:27 MarkDuplicates Tracking 110115 as yet unmatched pairs. 5555 records in RAM.
INFO 2026-06-08 09:22:28 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chr21:46,422,004
INFO 2026-06-08 09:22:28 MarkDuplicates Tracking 105884 as yet unmatched pairs. 1316 records in RAM.
INFO 2026-06-08 09:22:31 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 2s. Last read position: chr22:19,447,416
INFO 2026-06-08 09:22:31 MarkDuplicates Tracking 101904 as yet unmatched pairs. 56343 records in RAM.
INFO 2026-06-08 09:22:32 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 1s. Last read position: chr22:20,993,735
INFO 2026-06-08 09:22:32 MarkDuplicates Tracking 98878 as yet unmatched pairs. 53310 records in RAM.
INFO 2026-06-08 09:22:34 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: chr22:23,314,047
INFO 2026-06-08 09:22:34 MarkDuplicates Tracking 95984 as yet unmatched pairs. 50416 records in RAM.
INFO 2026-06-08 09:22:36 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chr22:25,028,052
INFO 2026-06-08 09:22:36 MarkDuplicates Tracking 91318 as yet unmatched pairs. 45745 records in RAM.
INFO 2026-06-08 09:22:37 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chr22:29,287,120
INFO 2026-06-08 09:22:37 MarkDuplicates Tracking 91044 as yet unmatched pairs. 45469 records in RAM.
INFO 2026-06-08 09:22:39 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chr22:30,386,094
INFO 2026-06-08 09:22:39 MarkDuplicates Tracking 84708 as yet unmatched pairs. 39133 records in RAM.
INFO 2026-06-08 09:22:40 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chr22:32,190,679
INFO 2026-06-08 09:22:40 MarkDuplicates Tracking 80998 as yet unmatched pairs. 35416 records in RAM.
INFO 2026-06-08 09:22:42 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 1s. Last read position: chr22:36,312,157
INFO 2026-06-08 09:22:42 MarkDuplicates Tracking 78756 as yet unmatched pairs. 33162 records in RAM.
INFO 2026-06-08 09:22:44 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chr22:37,650,695
INFO 2026-06-08 09:22:44 MarkDuplicates Tracking 74754 as yet unmatched pairs. 29155 records in RAM.
INFO 2026-06-08 09:22:45 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: chr22:38,505,960
INFO 2026-06-08 09:22:45 MarkDuplicates Tracking 73310 as yet unmatched pairs. 27706 records in RAM.
INFO 2026-06-08 09:22:47 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 1s. Last read position: chr22:40,770,961
INFO 2026-06-08 09:22:47 MarkDuplicates Tracking 66863 as yet unmatched pairs. 21259 records in RAM.
INFO 2026-06-08 09:22:49 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 1s. Last read position: chr22:41,894,912
INFO 2026-06-08 09:22:49 MarkDuplicates Tracking 64661 as yet unmatched pairs. 19056 records in RAM.
INFO 2026-06-08 09:22:50 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 1s. Last read position: chr22:44,725,243
INFO 2026-06-08 09:22:50 MarkDuplicates Tracking 60578 as yet unmatched pairs. 14966 records in RAM.
INFO 2026-06-08 09:22:51 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 1s. Last read position: chr22:49,910,034
INFO 2026-06-08 09:22:51 MarkDuplicates Tracking 56402 as yet unmatched pairs. 10787 records in RAM.
INFO 2026-06-08 09:22:53 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 1s. Last read position: chr22:50,290,058
INFO 2026-06-08 09:22:53 MarkDuplicates Tracking 54362 as yet unmatched pairs. 8745 records in RAM.
INFO 2026-06-08 09:22:55 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 1s. Last read position: chr22:50,528,500
INFO 2026-06-08 09:22:55 MarkDuplicates Tracking 48645 as yet unmatched pairs. 3023 records in RAM.
INFO 2026-06-08 09:22:57 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 2s. Last read position: chrX:3,311,309
INFO 2026-06-08 09:22:57 MarkDuplicates Tracking 44060 as yet unmatched pairs. 40239 records in RAM.
INFO 2026-06-08 09:22:59 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 1s. Last read position: chrX:19,706,883
INFO 2026-06-08 09:22:59 MarkDuplicates Tracking 40731 as yet unmatched pairs. 36904 records in RAM.
INFO 2026-06-08 09:23:01 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 1s. Last read position: chrX:41,171,818
INFO 2026-06-08 09:23:01 MarkDuplicates Tracking 37833 as yet unmatched pairs. 34003 records in RAM.
INFO 2026-06-08 09:23:02 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 1s. Last read position: chrX:47,582,456
INFO 2026-06-08 09:23:02 MarkDuplicates Tracking 34810 as yet unmatched pairs. 30980 records in RAM.
INFO 2026-06-08 09:23:03 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 1s. Last read position: chrX:49,206,553
INFO 2026-06-08 09:23:03 MarkDuplicates Tracking 30922 as yet unmatched pairs. 27092 records in RAM.
INFO 2026-06-08 09:23:05 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 1s. Last read position: chrX:53,600,294
INFO 2026-06-08 09:23:05 MarkDuplicates Tracking 28816 as yet unmatched pairs. 24986 records in RAM.
INFO 2026-06-08 09:23:07 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 1s. Last read position: chrX:70,452,646
INFO 2026-06-08 09:23:07 MarkDuplicates Tracking 26165 as yet unmatched pairs. 22335 records in RAM.
INFO 2026-06-08 09:23:08 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 1s. Last read position: chrX:73,584,541
INFO 2026-06-08 09:23:08 MarkDuplicates Tracking 21969 as yet unmatched pairs. 18139 records in RAM.
INFO 2026-06-08 09:23:10 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 1s. Last read position: chrX:100,862,705
INFO 2026-06-08 09:23:10 MarkDuplicates Tracking 19138 as yet unmatched pairs. 15307 records in RAM.
INFO 2026-06-08 09:23:11 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 1s. Last read position: chrX:120,217,666
INFO 2026-06-08 09:23:11 MarkDuplicates Tracking 16102 as yet unmatched pairs. 12271 records in RAM.
INFO 2026-06-08 09:23:13 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:22:34s. Time for last 1,000,000: 1s. Last read position: chrX:149,713,978
INFO 2026-06-08 09:23:13 MarkDuplicates Tracking 13259 as yet unmatched pairs. 9428 records in RAM.
INFO 2026-06-08 09:23:15 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 1s. Last read position: chrX:153,982,589
INFO 2026-06-08 09:23:15 MarkDuplicates Tracking 9436 as yet unmatched pairs. 5605 records in RAM.
INFO 2026-06-08 09:23:16 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 1s. Last read position: chrX:154,435,410
INFO 2026-06-08 09:23:16 MarkDuplicates Tracking 6500 as yet unmatched pairs. 2669 records in RAM.
INFO 2026-06-08 09:23:17 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,494
INFO 2026-06-08 09:23:17 MarkDuplicates Tracking 2955 as yet unmatched pairs. 870 records in RAM.
INFO 2026-06-08 09:23:18 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:22:40s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,292
INFO 2026-06-08 09:23:18 MarkDuplicates Tracking 1440 as yet unmatched pairs. 1364 records in RAM.
INFO 2026-06-08 09:23:20 MarkDuplicates Read 642677473 records. 0 pairs never matched.
INFO 2026-06-08 09:24:02 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142112; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:24:02 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:24:05 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:24:05 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:24:31 OpticalDuplicateFinder Large duplicate set. size = 2779
INFO 2026-06-08 09:24:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,781
INFO 2026-06-08 09:24:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,983
INFO 2026-06-08 09:25:16 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 09:25:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,664
INFO 2026-06-08 09:25:16 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:25:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,825
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder Large duplicate set. size = 1109
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,679
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder Large duplicate set. size = 1282
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,445
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder Large duplicate set. size = 1792
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,171
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder Large duplicate set. size = 1287
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,208
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder Large duplicate set. size = 1162
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,166
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder Large duplicate set. size = 1404
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,602
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder Large duplicate set. size = 2073
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,971
INFO 2026-06-08 09:25:17 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,375
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder Large duplicate set. size = 1311
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,028
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder Large duplicate set. size = 1220
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,295
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder Large duplicate set. size = 1726
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,513
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,467
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder Large duplicate set. size = 1138
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,704
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder Large duplicate set. size = 1466
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,219
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder Large duplicate set. size = 1617
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,243
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder Large duplicate set. size = 2796
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,435
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,229
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder Large duplicate set. size = 1758
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,559
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder Large duplicate set. size = 1488
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,342
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,009
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder Large duplicate set. size = 1660
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,276
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder Large duplicate set. size = 1158
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,895
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder Large duplicate set. size = 1272
INFO 2026-06-08 09:25:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,037
INFO 2026-06-08 09:25:19 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 09:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,493
INFO 2026-06-08 09:25:19 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 09:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,384
INFO 2026-06-08 09:25:19 OpticalDuplicateFinder Large duplicate set. size = 1541
INFO 2026-06-08 09:25:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,809
INFO 2026-06-08 09:25:33 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:25:34 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:26:33 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:26:38 MarkDuplicates After generateDuplicateIndexes freeMemory: 203949400; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:26:38 MarkDuplicates Marking 360807890 records as duplicates.
INFO 2026-06-08 09:26:38 MarkDuplicates Found 18182713 optical duplicate clusters.
INFO 2026-06-08 09:26:38 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:26:57 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:19s. Time for last 10,000,000: 19s. Last read position: chr1:20,604,969
INFO 2026-06-08 09:27:16 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:38s. Time for last 10,000,000: 18s. Last read position: chr1:42,926,914
INFO 2026-06-08 09:27:34 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:56s. Time for last 10,000,000: 18s. Last read position: chr1:116,388,180
INFO 2026-06-08 09:27:53 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:15s. Time for last 10,000,000: 18s. Last read position: chr1:155,191,855
INFO 2026-06-08 09:28:11 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:33s. Time for last 10,000,000: 18s. Last read position: chr1:201,900,025
INFO 2026-06-08 09:28:30 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:52s. Time for last 10,000,000: 18s. Last read position: chr2:14,634,661
INFO 2026-06-08 09:28:48 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:10s. Time for last 10,000,000: 18s. Last read position: chr2:42,054,984
INFO 2026-06-08 09:29:07 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:29s. Time for last 10,000,000: 18s. Last read position: chr2:101,004,209
INFO 2026-06-08 09:29:26 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:47s. Time for last 10,000,000: 18s. Last read position: chr2:189,008,975
INFO 2026-06-08 09:29:44 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:06s. Time for last 10,000,000: 18s. Last read position: chr2:233,551,402
INFO 2026-06-08 09:30:03 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:25s. Time for last 10,000,000: 18s. Last read position: chr3:47,412,936
INFO 2026-06-08 09:30:21 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:43s. Time for last 10,000,000: 18s. Last read position: chr3:100,643,318
INFO 2026-06-08 09:30:41 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:04:02s. Time for last 10,000,000: 19s. Last read position: chr3:194,687,628
INFO 2026-06-08 09:30:59 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:21s. Time for last 10,000,000: 18s. Last read position: chr4:73,091,783
INFO 2026-06-08 09:31:18 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:40s. Time for last 10,000,000: 18s. Last read position: chr5:5,473,668
INFO 2026-06-08 09:31:36 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:58s. Time for last 10,000,000: 18s. Last read position: chr5:135,578,434
INFO 2026-06-08 09:31:55 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:17s. Time for last 10,000,000: 18s. Last read position: chr5:178,884,050
INFO 2026-06-08 09:32:13 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:35s. Time for last 10,000,000: 18s. Last read position: chr6:31,640,251
INFO 2026-06-08 09:32:32 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:54s. Time for last 10,000,000: 18s. Last read position: chr6:56,459,044
INFO 2026-06-08 09:32:50 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:06:12s. Time for last 10,000,000: 18s. Last read position: chr6:166,946,669
INFO 2026-06-08 09:33:09 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:31s. Time for last 10,000,000: 18s. Last read position: chr7:70,763,009
INFO 2026-06-08 09:33:28 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:50s. Time for last 10,000,000: 18s. Last read position: chr7:100,993,192
INFO 2026-06-08 09:33:46 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:07:07s. Time for last 10,000,000: 17s. Last read position: chr7:101,001,818
INFO 2026-06-08 09:34:05 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:27s. Time for last 10,000,000: 19s. Last read position: chr7:144,623,190
INFO 2026-06-08 09:34:24 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:46s. Time for last 10,000,000: 19s. Last read position: chr8:47,970,485
INFO 2026-06-08 09:34:44 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:08:06s. Time for last 10,000,000: 19s. Last read position: chr8:143,860,019
INFO 2026-06-08 09:35:02 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:24s. Time for last 10,000,000: 18s. Last read position: chr8:143,929,930
INFO 2026-06-08 09:35:22 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:43s. Time for last 10,000,000: 19s. Last read position: chr9:89,350,767
INFO 2026-06-08 09:35:41 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:09:03s. Time for last 10,000,000: 19s. Last read position: chr9:131,580,337
INFO 2026-06-08 09:36:00 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:09:22s. Time for last 10,000,000: 19s. Last read position: chr10:32,048,485
INFO 2026-06-08 09:36:20 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:41s. Time for last 10,000,000: 19s. Last read position: chr10:101,807,843
INFO 2026-06-08 09:36:39 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:10:01s. Time for last 10,000,000: 19s. Last read position: chr11:1,078,371
INFO 2026-06-08 09:36:57 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:10:19s. Time for last 10,000,000: 18s. Last read position: chr11:7,635,556
INFO 2026-06-08 09:37:16 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:38s. Time for last 10,000,000: 18s. Last read position: chr11:62,633,239
INFO 2026-06-08 09:37:35 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:57s. Time for last 10,000,000: 18s. Last read position: chr11:73,310,585
INFO 2026-06-08 09:37:55 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:11:17s. Time for last 10,000,000: 19s. Last read position: chr12:6,363,509
INFO 2026-06-08 09:38:15 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:11:37s. Time for last 10,000,000: 20s. Last read position: chr12:53,059,225
INFO 2026-06-08 09:38:35 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:57s. Time for last 10,000,000: 19s. Last read position: chr12:103,989,549
INFO 2026-06-08 09:38:54 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:12:16s. Time for last 10,000,000: 19s. Last read position: chr13:27,427,122
INFO 2026-06-08 09:39:14 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:12:36s. Time for last 10,000,000: 19s. Last read position: chr14:24,163,431
INFO 2026-06-08 09:39:34 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:56s. Time for last 10,000,000: 19s. Last read position: chr14:94,110,786
INFO 2026-06-08 09:39:53 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:13:15s. Time for last 10,000,000: 19s. Last read position: chr15:40,292,135
INFO 2026-06-08 09:40:12 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:13:34s. Time for last 10,000,000: 18s. Last read position: chr15:75,207,198
INFO 2026-06-08 09:40:31 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:53s. Time for last 10,000,000: 19s. Last read position: chr16:2,089,740
INFO 2026-06-08 09:40:50 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:14:12s. Time for last 10,000,000: 19s. Last read position: chr16:18,379,161
INFO 2026-06-08 09:41:10 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:14:32s. Time for last 10,000,000: 19s. Last read position: chr16:30,225,255
INFO 2026-06-08 09:41:29 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:51s. Time for last 10,000,000: 19s. Last read position: chr16:74,942,798
INFO 2026-06-08 09:41:48 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:15:10s. Time for last 10,000,000: 19s. Last read position: chr17:7,260,402
INFO 2026-06-08 09:42:08 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:15:29s. Time for last 10,000,000: 19s. Last read position: chr17:38,011,510
INFO 2026-06-08 09:42:28 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:15:50s. Time for last 10,000,000: 20s. Last read position: chr17:48,622,756
INFO 2026-06-08 09:42:48 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:16:10s. Time for last 10,000,000: 20s. Last read position: chr17:50,193,013
INFO 2026-06-08 09:43:08 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:16:30s. Time for last 10,000,000: 19s. Last read position: chr17:51,168,280
INFO 2026-06-08 09:43:27 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:16:49s. Time for last 10,000,000: 19s. Last read position: chr17:78,997,448
INFO 2026-06-08 09:43:47 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:17:08s. Time for last 10,000,000: 19s. Last read position: chr18:57,615,820
INFO 2026-06-08 09:44:06 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:17:28s. Time for last 10,000,000: 19s. Last read position: chr19:5,844,729