[W::hts_idx_load3] The index file is older than the data file: 659_bGW-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	377366586
Known Splicing Events:	373944076
Partial Novel Splicing Events:	1726495
Novel Splicing Events:	1528376
Filtered Splicing Events:	167639

Total splicing  Junctions:	725430
Known Splicing Junctions:	293229
Partial Novel Splicing Junctions:	196087
Novel Splicing Junctions:	236114

===================================================================
Create BED file ...
Create Interact file ...