Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/50ce38a6df36119b17bb2e96d5f5af/659_bGW-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/93ae7f85cd630d94da1de8ea10be62/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/93ae7f85cd630d94da1de8ea10be62/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/e822b73d09ba71829a7ea4ecc56fb6/659_bGW-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 377366586
[W::hts_idx_load3] The index file is older than the data file: 659_bGW-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	377366586
Known Splicing Events:	373944076
Partial Novel Splicing Events:	1726495
Novel Splicing Events:	1528376
Filtered Splicing Events:	167639

Total splicing  Junctions:	725430
Known Splicing Junctions:	293229
Partial Novel Splicing Junctions:	196087
Novel Splicing Junctions:	236114

===================================================================
Create BED file ...
Create Interact file ...