Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/55d645b0c751ebe6c8621c66ec73d8/659_cVw-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/beb07215faaa891058d526f606b1de/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/beb07215faaa891058d526f606b1de/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/08e79a31961c6496a3da353d388b5c/659_cVw-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory