NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES (659_cRB-T1-TRNA-1_A23MVY2LT4_2) - dev_rna_exp0014_exp0015-73d51683 - Workflow Tracker

Runs
dev_rna_exp0..15-73d51683
Tasks
GATK4_MARKDUPLICATES (659_cRB-T1-TRNA-1_A23MVY2LT4_2)

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Task Info

Status: succeeded
Hash: c01d7265c0a2
Process: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES
Tag: 659_cRB-T1-TRNA-1_A23MVY2LT4_2
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 8a/f83a41
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/f83a412e127d9a127c1b12227387a4
Native ID: nf-8af83a412e127d9a127c1b12227387a4-4b4ce

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 2
Memory (peak / alloc): 101.2 GB / 148.0 GB
Process I/O (rchar / wchar): 50.4 GB / 34.4 GB
Disk I/O (read / write): - / 34.4 GB
Host: i-026374350f43dc3bf ( on-demand)

Runtime

Submitted: Jun 08, 2026 2:37:39 AM
Completed: Jun 08, 2026 3:27:38 AM
Total Duration: 49m 58s

Phases

Queue: 42s
Execution: 47m 22s
Stage/Unstage: 1m 54s

Attempt 1

Execution

Status: failed
Hash: 42/580729
Failure Reason: spot eviction ()
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/58072957b7ae95900ce40522c68626
Native ID: nf-4258072957b7ae95900ce40522c68626-f3b7b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 74.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0865ab098237db95a ( spot)

Runtime

Submitted: Jun 08, 2026 1:48:37 AM
Completed: Jun 08, 2026 2:37:38 AM
Total Duration: 49m 0s

Phases

Queue: 49m 0s
Execution: -
Stage/Unstage: -