Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/51245fe44ac7ff1f52b5e094f5a41f/659_bGW-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/e429cb1dc1f02cb5b7cdf4939e4840/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/e429cb1dc1f02cb5b7cdf4939e4840/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory