Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/8be1b0c3629ac0b9f8e610df616ec9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/8be1b0c3629ac0b9f8e610df616ec9/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/blacklist_breakpoint_database_2026-04-27.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/32aba4569852941127188c2f50b565/659_bCu-T1-TRNA-1_A23MVY2LT4_2.arriba.fusions.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-bba2394f-ea06-4038-829e-f0bb41c45b0f/84/e510984b93930338ae941c5c84bcbe/arriba_filter_config.yaml
==> STAGING COMPLETE (5 inputs)

  AIH curated blacklist: matched 0 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 43
  Pass (FILTER=PASS): 10 (23.3%)
  Fail (FILTER=FAIL): 33 (76.7%)

Failure reasons (top 15):
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 5
  confidence_below_min(medium<high): 4
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 4
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 4
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 1
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 1
  total_reads_below_min(5.0<8.0): 1
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 1
  total_reads_below_min(6.0<8.0): 1
  total_reads_below_min(2.0<8.0): 1
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1

Breakdown by confidence:
  high: 10 pass, 3 fail (total: 13)
  low: 0 pass, 18 fail (total: 18)
  medium: 0 pass, 12 fail (total: 12)
Arriba filter: 43 rows -> 10 PASS; wrote 659_bCu-T1-TRNA-1_A23MVY2LT4_2.arriba.fusions.filtered.tsv and 659_bCu-T1-TRNA-1_A23MVY2LT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_bCu-T1-TRNA-1_A23MVY2LT4_2.arriba.fusions.filter_summary.txt