Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/08673ee12ee6a0211e830547e14205/659_bCu-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/072a9a384745fa185df2e21e80f634/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/072a9a384745fa185df2e21e80f634/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bCu-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bCu-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_bCu-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:48:31.646 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:48:31 GMT 2026] MarkDuplicates --INPUT 659_bCu-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bCu-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_bCu-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:48:31 GMT 2026] Executing as ?@nf-ec072a9a384745fa185df2e21e80f634-6075b-h56lw on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:48:31 MarkDuplicates Start of doWork freeMemory: 105827576; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:48:31 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:48:31 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,655,439
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 2940 as yet unmatched pairs. 70 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:8,360,466
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 6464 as yet unmatched pairs. 673 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:12,617,234
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 8441 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:18,874,764
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 10706 as yet unmatched pairs. 3 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:21,836,997
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 14189 as yet unmatched pairs. 1008 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:22,638,879
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 16419 as yet unmatched pairs. 379 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:26,697,227
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 18757 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:30,877,047
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 21661 as yet unmatched pairs. 165 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:35,019,460
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 24207 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:39,385,834
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 27012 as yet unmatched pairs. 328 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:43,443,073
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 29399 as yet unmatched pairs. 111 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:52,896,507
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 32064 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:85,581,981
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 34851 as yet unmatched pairs. 519 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:109,923,276
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 37291 as yet unmatched pairs. 603 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:119,915,655
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 43047 as yet unmatched pairs. 3640 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:119,997,143
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 43600 as yet unmatched pairs. 1580 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:120,816,551
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 43040 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:145,853,567
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 44449 as yet unmatched pairs. 319 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:146,126,237
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 45783 as yet unmatched pairs. 603 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:146,691,011
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 46366 as yet unmatched pairs. 25 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:148,542,904
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 47296 as yet unmatched pairs. 53 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:148,590,860
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 47719 as yet unmatched pairs. 178 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:149,390,860
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 51541 as yet unmatched pairs. 2885 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:149,832,682
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 49527 as yet unmatched pairs. 73 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:150,553,414
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 52648 as yet unmatched pairs. 720 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:151,132,939
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 54897 as yet unmatched pairs. 178 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:152,215,392
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 58236 as yet unmatched pairs. 1498 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:152,308,906
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 59657 as yet unmatched pairs. 1146 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:153,952,218
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 61223 as yet unmatched pairs. 290 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:154,558,350
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 63224 as yet unmatched pairs. 64 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:155,043,367
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 65465 as yet unmatched pairs. 89 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:155,481,884
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 67846 as yet unmatched pairs. 148 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:156,114,798
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 73385 as yet unmatched pairs. 3416 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:156,134,962
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 80901 as yet unmatched pairs. 7473 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:156,138,710
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 79250 as yet unmatched pairs. 2916 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:156,670,536
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 82230 as yet unmatched pairs. 3384 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:156,700,542
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 84741 as yet unmatched pairs. 2934 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:160,333,626
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 84380 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:163,073,502
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 87245 as yet unmatched pairs. 319 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:171,784,026
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 89656 as yet unmatched pairs. 264 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:180,928,483
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 92515 as yet unmatched pairs. 590 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:184,795,485
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 95658 as yet unmatched pairs. 886 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:201,143,898
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 97519 as yet unmatched pairs. 268 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:201,208,052
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 104287 as yet unmatched pairs. 4338 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:201,210,878
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 102778 as yet unmatched pairs. 999 records in RAM.
INFO 2026-06-08 08:49:51 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:201,215,660
INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 105887 as yet unmatched pairs. 1669 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:201,623,590
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 107931 as yet unmatched pairs. 831 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:203,076,037
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 110017 as yet unmatched pairs. 370 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:204,223,526
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 112168 as yet unmatched pairs. 304 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:207,752,232
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 114498 as yet unmatched pairs. 403 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:214,629,101
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 116732 as yet unmatched pairs. 9 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:224,433,870
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 120800 as yet unmatched pairs. 1599 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:228,101,205
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 121755 as yet unmatched pairs. 17 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:233,905,054
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 125099 as yet unmatched pairs. 66 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:244,054,731
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 128554 as yet unmatched pairs. 306 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 2s. Last read position: chr2:3,388,092
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 131839 as yet unmatched pairs. 131656 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr2:27,082,275
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 134142 as yet unmatched pairs. 133948 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:29,193,515
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 144138 as yet unmatched pairs. 143915 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:29,214,019
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 150915 as yet unmatched pairs. 150692 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:29,223,435
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 167617 as yet unmatched pairs. 167392 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,254
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 182436 as yet unmatched pairs. 140485 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 518429 as yet unmatched pairs. 118377 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,379
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 1102552 as yet unmatched pairs. 80170 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 1143890 as yet unmatched pairs. 77314 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:33,252,705
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 1214039 as yet unmatched pairs. 74058 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:37,214,915
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 1209356 as yet unmatched pairs. 69375 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr2:44,209,279
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 1206938 as yet unmatched pairs. 66956 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:54,645,990
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 1204594 as yet unmatched pairs. 64599 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:61,188,609
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 1201776 as yet unmatched pairs. 61780 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 2s. Last read position: chr2:69,245,224
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 1199387 as yet unmatched pairs. 59382 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:73,225,886
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 1196676 as yet unmatched pairs. 56660 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:74,460,391
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 1193849 as yet unmatched pairs. 53831 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr2:85,344,259
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 1190800 as yet unmatched pairs. 50780 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:87,783,315
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 1188805 as yet unmatched pairs. 48764 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:101,004,185
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 1187263 as yet unmatched pairs. 47222 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:110,535,414
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 1184724 as yet unmatched pairs. 44677 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:130,341,718
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 1182528 as yet unmatched pairs. 42471 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:169,877,595
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 1179876 as yet unmatched pairs. 39811 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:188,994,750
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 1179199 as yet unmatched pairs. 39124 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:189,075,424
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 1174664 as yet unmatched pairs. 34588 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:200,419,312
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 1172166 as yet unmatched pairs. 32082 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:203,328,499
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 1169306 as yet unmatched pairs. 29222 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:206,146,935
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 1167309 as yet unmatched pairs. 27220 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:215,371,996
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 1168605 as yet unmatched pairs. 28502 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:215,382,228
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 1165095 as yet unmatched pairs. 24990 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,224
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 1162025 as yet unmatched pairs. 21918 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,179
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 1160206 as yet unmatched pairs. 20097 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:217,804,409
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 1156006 as yet unmatched pairs. 15897 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:217,885,117
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 1155997 as yet unmatched pairs. 15888 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:219,282,890
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 1150118 as yet unmatched pairs. 10003 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:219,574,900
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 1147120 as yet unmatched pairs. 7004 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:237,345,181
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 1145180 as yet unmatched pairs. 5036 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:240,594,532
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 1141863 as yet unmatched pairs. 1714 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr3:9,734,633
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 1138874 as yet unmatched pairs. 64904 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr3:12,899,453
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 1136172 as yet unmatched pairs. 62199 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr3:27,420,716
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 1133681 as yet unmatched pairs. 59707 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr3:39,411,970
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 1132599 as yet unmatched pairs. 58624 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr3:45,225,347
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 1129247 as yet unmatched pairs. 55271 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr3:47,418,148
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 1125207 as yet unmatched pairs. 51229 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr3:48,570,313
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 1124157 as yet unmatched pairs. 50178 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr3:48,694,853
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 1120268 as yet unmatched pairs. 46282 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr3:49,132,594
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 1118031 as yet unmatched pairs. 44045 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr3:50,252,527
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 1114053 as yet unmatched pairs. 40067 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:52,487,465
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 1110680 as yet unmatched pairs. 36691 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr3:52,706,179
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 1107677 as yet unmatched pairs. 33677 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:58,156,024
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 1105399 as yet unmatched pairs. 31392 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr3:86,968,679
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 1103216 as yet unmatched pairs. 29188 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:111,913,429
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 1102154 as yet unmatched pairs. 28125 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr3:121,698,700
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 1097740 as yet unmatched pairs. 23711 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:123,700,451
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 1098874 as yet unmatched pairs. 24844 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr3:124,821,319
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 1093702 as yet unmatched pairs. 19671 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:128,813,459
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 1089684 as yet unmatched pairs. 15652 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:136,377,678
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 1087069 as yet unmatched pairs. 13035 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:150,410,642
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 1084647 as yet unmatched pairs. 10604 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:179,067,710
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 1081793 as yet unmatched pairs. 7740 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:184,354,286
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 1079042 as yet unmatched pairs. 4987 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr3:188,609,413
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 1077616 as yet unmatched pairs. 3558 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:196,886,590
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 1074626 as yet unmatched pairs. 563 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr4:1,228,276
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 1072205 as yet unmatched pairs. 27650 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr4:3,132,646
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 1069089 as yet unmatched pairs. 24534 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr4:7,763,647
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 1067226 as yet unmatched pairs. 22671 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr4:13,603,065
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 1063201 as yet unmatched pairs. 18644 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr4:38,908,674
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 1060386 as yet unmatched pairs. 15827 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr4:56,436,219
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 1057749 as yet unmatched pairs. 13187 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr4:79,938,332
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 1054934 as yet unmatched pairs. 10369 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr4:88,652,087
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 1052667 as yet unmatched pairs. 8101 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr4:119,030,489
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 1050669 as yet unmatched pairs. 6102 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr4:147,881,904
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 1047716 as yet unmatched pairs. 3146 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr4:186,603,629
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 1044910 as yet unmatched pairs. 328 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr5:14,291,098
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 1044201 as yet unmatched pairs. 58933 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr5:14,487,845
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 1042292 as yet unmatched pairs. 57023 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr5:37,019,378
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 1037061 as yet unmatched pairs. 51791 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr5:63,960,782
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 1034642 as yet unmatched pairs. 49361 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr5:73,909,636
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 1032718 as yet unmatched pairs. 47437 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr5:83,512,246
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 1036216 as yet unmatched pairs. 50933 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr5:96,662,418
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 1029027 as yet unmatched pairs. 43743 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr5:121,974,255
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 1025301 as yet unmatched pairs. 40016 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr5:134,578,780
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 1023028 as yet unmatched pairs. 37737 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr5:138,467,408
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 1022142 as yet unmatched pairs. 36849 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr5:140,505,771
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 1017801 as yet unmatched pairs. 32463 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr5:141,211,078
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 1016140 as yet unmatched pairs. 30802 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr5:141,516,970
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 1013383 as yet unmatched pairs. 28024 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr5:149,307,468
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 1010850 as yet unmatched pairs. 25490 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr5:150,135,655
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 1012711 as yet unmatched pairs. 27347 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,259
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 1012880 as yet unmatched pairs. 27516 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr5:151,052,088
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 1003242 as yet unmatched pairs. 17878 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr5:157,505,587
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 1000291 as yet unmatched pairs. 14924 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,168
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 1003910 as yet unmatched pairs. 18541 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr5:177,135,110
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 995132 as yet unmatched pairs. 9759 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr5:177,536,479
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 992780 as yet unmatched pairs. 7407 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr5:179,821,065
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 995316 as yet unmatched pairs. 9942 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr5:180,612,557
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 986426 as yet unmatched pairs. 1051 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 2s. Last read position: chr6:7,230,106
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 984196 as yet unmatched pairs. 65102 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr6:18,258,367
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 981018 as yet unmatched pairs. 61923 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr6:29,623,407
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 978265 as yet unmatched pairs. 59167 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr6:30,727,974
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 976066 as yet unmatched pairs. 56968 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr6:31,633,427
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 973511 as yet unmatched pairs. 54412 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr6:31,817,206
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 971576 as yet unmatched pairs. 52477 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr6:32,011,260
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 970246 as yet unmatched pairs. 51147 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr6:32,067,778
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 969899 as yet unmatched pairs. 50800 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr6:32,097,186
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 966512 as yet unmatched pairs. 47411 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr6:33,196,443
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 961002 as yet unmatched pairs. 41896 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr6:33,415,813
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 961579 as yet unmatched pairs. 42473 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr6:35,243,580
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 955773 as yet unmatched pairs. 36665 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr6:41,940,494
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 953562 as yet unmatched pairs. 34451 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr6:43,369,127
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 950011 as yet unmatched pairs. 30899 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 2s. Last read position: chr6:44,256,777
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 947134 as yet unmatched pairs. 28019 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr6:56,628,028
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 944614 as yet unmatched pairs. 25497 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr6:82,365,488
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 944566 as yet unmatched pairs. 25439 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr6:106,640,360
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 939114 as yet unmatched pairs. 19977 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr6:116,399,479
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 936963 as yet unmatched pairs. 17819 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr6:135,002,824
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 933806 as yet unmatched pairs. 14658 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr6:148,543,916
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 931455 as yet unmatched pairs. 12305 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr6:151,352,438
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 929490 as yet unmatched pairs. 10339 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr6:156,901,385
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 926313 as yet unmatched pairs. 7158 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr6:160,096,552
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 923769 as yet unmatched pairs. 4612 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr6:169,234,767
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 922881 as yet unmatched pairs. 3722 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 2s. Last read position: chr7:1,502,926
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 918172 as yet unmatched pairs. 57505 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr7:5,388,665
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 915198 as yet unmatched pairs. 54527 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr7:11,541,468
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 911797 as yet unmatched pairs. 51121 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr7:44,002,414
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 909238 as yet unmatched pairs. 48555 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr7:55,492,351
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 906659 as yet unmatched pairs. 45975 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr7:73,003,105
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 904641 as yet unmatched pairs. 43953 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr7:75,024,446
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 902676 as yet unmatched pairs. 41983 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,941
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 905081 as yet unmatched pairs. 44388 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr7:87,199,006
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 898319 as yet unmatched pairs. 37625 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr7:94,411,073
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 898687 as yet unmatched pairs. 37993 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr7:98,978,302
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 893107 as yet unmatched pairs. 32412 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr7:100,430,171
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 890749 as yet unmatched pairs. 30047 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr7:100,872,703
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 887754 as yet unmatched pairs. 27050 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr7:102,201,440
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 885590 as yet unmatched pairs. 24884 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr7:102,558,429
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 885067 as yet unmatched pairs. 24361 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr7:105,090,124
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 882839 as yet unmatched pairs. 22133 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr7:127,844,378
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 881256 as yet unmatched pairs. 20545 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr7:128,844,052
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 879773 as yet unmatched pairs. 19062 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr7:129,225,236
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 875126 as yet unmatched pairs. 14415 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr7:137,882,450
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 873490 as yet unmatched pairs. 12765 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr7:140,734,707
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 870386 as yet unmatched pairs. 9660 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr7:143,876,233
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 868505 as yet unmatched pairs. 7778 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr7:150,951,784
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 865772 as yet unmatched pairs. 5045 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr7:152,180,895
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 862788 as yet unmatched pairs. 2059 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr8:8,892,524
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 860163 as yet unmatched pairs. 51178 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr8:20,250,163
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 857767 as yet unmatched pairs. 48781 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr8:23,068,768
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 855271 as yet unmatched pairs. 46283 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr8:27,634,128
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 852602 as yet unmatched pairs. 43613 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr8:37,797,392
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 849786 as yet unmatched pairs. 40797 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr8:38,414,201
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 850081 as yet unmatched pairs. 41092 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr8:38,819,869
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 848393 as yet unmatched pairs. 39404 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr8:42,322,012
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 842163 as yet unmatched pairs. 33173 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr8:63,180,499
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 839314 as yet unmatched pairs. 30320 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr8:86,529,058
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 836808 as yet unmatched pairs. 27809 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr8:102,651,290
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 834346 as yet unmatched pairs. 25342 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr8:120,369,328
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 833601 as yet unmatched pairs. 24596 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr8:133,246,625
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 830900 as yet unmatched pairs. 21890 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr8:143,268,841
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 826062 as yet unmatched pairs. 17049 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr8:143,860,367
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 822741 as yet unmatched pairs. 13714 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,370
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 822386 as yet unmatched pairs. 13358 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,268
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 816371 as yet unmatched pairs. 7340 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr8:144,110,480
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 812473 as yet unmatched pairs. 3441 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr8:144,851,023
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 809373 as yet unmatched pairs. 338 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr9:14,120,511
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 806979 as yet unmatched pairs. 51341 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr9:35,092,320
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 804239 as yet unmatched pairs. 48599 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr9:37,126,451
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 801409 as yet unmatched pairs. 45761 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr9:76,704,995
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 799435 as yet unmatched pairs. 43784 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr9:87,731,011
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 797255 as yet unmatched pairs. 41602 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr9:96,938,349
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 793112 as yet unmatched pairs. 37458 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr9:108,856,254
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 790079 as yet unmatched pairs. 34424 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr9:114,284,724
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 787838 as yet unmatched pairs. 32183 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr9:115,085,910
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 786690 as yet unmatched pairs. 31035 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr9:121,282,486
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 783977 as yet unmatched pairs. 28322 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr9:124,804,210
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 782477 as yet unmatched pairs. 26821 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr9:127,579,490
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 777346 as yet unmatched pairs. 21689 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr9:128,574,714
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 775103 as yet unmatched pairs. 19445 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr9:129,640,557
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 771799 as yet unmatched pairs. 16139 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr9:131,129,465
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 769508 as yet unmatched pairs. 13847 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr9:133,332,246
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 766836 as yet unmatched pairs. 11175 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr9:134,811,518
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 764371 as yet unmatched pairs. 8702 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr9:136,508,343
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 761370 as yet unmatched pairs. 5701 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr9:137,110,570
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 758256 as yet unmatched pairs. 2586 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 2s. Last read position: chr10:871,113
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 755149 as yet unmatched pairs. 41442 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr10:13,878,632
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 752586 as yet unmatched pairs. 38877 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr10:18,140,789
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 749697 as yet unmatched pairs. 35985 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr10:29,550,629
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 749348 as yet unmatched pairs. 35634 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr10:33,206,229
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 745772 as yet unmatched pairs. 32056 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr10:46,837,816
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 743212 as yet unmatched pairs. 29496 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr10:59,906,131
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 742264 as yet unmatched pairs. 28545 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr10:70,760,744
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 738446 as yet unmatched pairs. 24726 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr10:73,772,551
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 735693 as yet unmatched pairs. 21972 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr10:77,806,910
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 732816 as yet unmatched pairs. 19080 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr10:84,513,873
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 730300 as yet unmatched pairs. 16562 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr10:89,008,920
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 728630 as yet unmatched pairs. 14892 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr10:97,499,123
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 726653 as yet unmatched pairs. 12909 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 64s. Last read position: chr10:101,624,745
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 723602 as yet unmatched pairs. 9858 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr10:103,602,141
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 721327 as yet unmatched pairs. 7582 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr10:118,045,996
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 718119 as yet unmatched pairs. 4357 records in RAM.
INFO 2026-06-08 08:56:38 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr10:126,101,131
INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 715614 as yet unmatched pairs. 1851 records in RAM.
INFO 2026-06-08 08:56:40 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 2s. Last read position: chr11:320,629
INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 715537 as yet unmatched pairs. 95536 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,866,450
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 712119 as yet unmatched pairs. 92105 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr11:2,133,164
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 723397 as yet unmatched pairs. 103381 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr11:2,317,828
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 704406 as yet unmatched pairs. 84387 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr11:6,217,408
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 702127 as yet unmatched pairs. 82107 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr11:6,627,433
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 699316 as yet unmatched pairs. 79296 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr11:10,305,171
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 696223 as yet unmatched pairs. 76203 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr11:13,694,817
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 693480 as yet unmatched pairs. 73460 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr11:19,832,482
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 691579 as yet unmatched pairs. 71549 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr11:20,044,017
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 689975 as yet unmatched pairs. 69945 records in RAM.
INFO 2026-06-08 08:56:56 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr11:32,428,488
INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 686109 as yet unmatched pairs. 66078 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr11:46,299,980
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 684302 as yet unmatched pairs. 64270 records in RAM.
INFO 2026-06-08 08:57:00 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr11:47,418,888
INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 679697 as yet unmatched pairs. 59661 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr11:57,795,620
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 677393 as yet unmatched pairs. 57353 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr11:61,965,420
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 675547 as yet unmatched pairs. 55494 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr11:62,525,641
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 673422 as yet unmatched pairs. 53369 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr11:62,535,996
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 670166 as yet unmatched pairs. 50113 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr11:63,764,087
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 668034 as yet unmatched pairs. 47980 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr11:64,765,973
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 664703 as yet unmatched pairs. 44648 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr11:65,539,347
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 661387 as yet unmatched pairs. 41322 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr11:65,618,743
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 657591 as yet unmatched pairs. 37526 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr11:65,892,944
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 655394 as yet unmatched pairs. 35329 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr11:66,563,921
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 651683 as yet unmatched pairs. 31617 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr11:67,611,115
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 648945 as yet unmatched pairs. 28875 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr11:69,641,445
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 649208 as yet unmatched pairs. 29137 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 2s. Last read position: chr11:72,014,393
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 645194 as yet unmatched pairs. 25123 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr11:73,309,959
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 641039 as yet unmatched pairs. 20967 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr11:75,608,110
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 637491 as yet unmatched pairs. 17419 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr11:93,683,733
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 634563 as yet unmatched pairs. 14488 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr11:108,257,512
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 631815 as yet unmatched pairs. 11740 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr11:117,295,194
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 629180 as yet unmatched pairs. 9103 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr11:118,635,445
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 627300 as yet unmatched pairs. 7221 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr11:120,211,393
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 624216 as yet unmatched pairs. 4132 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr11:128,974,862
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 621251 as yet unmatched pairs. 1166 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 2s. Last read position: chr12:1,558,086
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 618672 as yet unmatched pairs. 75284 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr12:6,548,694
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 616918 as yet unmatched pairs. 73529 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr12:6,935,733
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 613625 as yet unmatched pairs. 70233 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr12:7,487,311
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 610976 as yet unmatched pairs. 67584 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr12:9,113,514
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 609962 as yet unmatched pairs. 66570 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr12:19,440,307
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 606226 as yet unmatched pairs. 62833 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr12:42,464,394
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 603593 as yet unmatched pairs. 60199 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr12:49,038,505
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 600907 as yet unmatched pairs. 57512 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr12:49,761,744
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 598575 as yet unmatched pairs. 55178 records in RAM.
INFO 2026-06-08 08:57:48 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 2s. Last read position: chr12:52,054,829
INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 600689 as yet unmatched pairs. 57292 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr12:53,102,075
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 594269 as yet unmatched pairs. 50872 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr12:54,281,868
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 592058 as yet unmatched pairs. 48660 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr12:55,694,831
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 588686 as yet unmatched pairs. 45288 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr12:56,173,696
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 585574 as yet unmatched pairs. 42175 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr12:57,092,914
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 583583 as yet unmatched pairs. 40183 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr12:57,158,402
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 581055 as yet unmatched pairs. 37655 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr12:57,185,124
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 577523 as yet unmatched pairs. 34119 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr12:57,208,171
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 575682 as yet unmatched pairs. 32278 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr12:57,727,527
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 571977 as yet unmatched pairs. 28573 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr12:76,030,587
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 571516 as yet unmatched pairs. 28108 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr12:91,146,099
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 566974 as yet unmatched pairs. 23564 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr12:104,003,156
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 564564 as yet unmatched pairs. 21153 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr12:110,346,094
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 562621 as yet unmatched pairs. 19210 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr12:113,384,910
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 559223 as yet unmatched pairs. 15811 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr12:120,215,551
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 556925 as yet unmatched pairs. 13512 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr12:122,140,978
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 554017 as yet unmatched pairs. 10604 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr12:124,336,946
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 555210 as yet unmatched pairs. 11797 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr12:124,372,437
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 549201 as yet unmatched pairs. 5788 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr12:132,028,208
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 546065 as yet unmatched pairs. 2652 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr13:20,596,226
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 542958 as yet unmatched pairs. 11197 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr13:45,340,769
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 540678 as yet unmatched pairs. 8914 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr13:101,706,804
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 538387 as yet unmatched pairs. 6620 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr13:110,307,919
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 536430 as yet unmatched pairs. 4663 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr13:113,321,712
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 532750 as yet unmatched pairs. 983 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr14:21,403,091
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 529876 as yet unmatched pairs. 37164 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr14:23,323,411
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 527103 as yet unmatched pairs. 34391 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr14:24,431,877
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 524380 as yet unmatched pairs. 31668 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,584
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 523577 as yet unmatched pairs. 30848 records in RAM.
INFO 2026-06-08 08:58:33 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr14:58,638,311
INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 519895 as yet unmatched pairs. 27166 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr14:68,790,248
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 520573 as yet unmatched pairs. 27842 records in RAM.
INFO 2026-06-08 08:58:36 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr14:70,907,811
INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 514732 as yet unmatched pairs. 22001 records in RAM.
INFO 2026-06-08 08:58:38 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr14:74,509,734
INFO 2026-06-08 08:58:38 MarkDuplicates Tracking 513094 as yet unmatched pairs. 20363 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr14:75,147,680
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 509335 as yet unmatched pairs. 16604 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 2s. Last read position: chr14:89,963,171
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 506448 as yet unmatched pairs. 13714 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr14:99,502,930
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 504053 as yet unmatched pairs. 11312 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr14:102,943,942
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 501186 as yet unmatched pairs. 8443 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr14:104,884,432
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 498362 as yet unmatched pairs. 5615 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr14:104,946,509
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 498830 as yet unmatched pairs. 6083 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr14:105,051,671
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 493755 as yet unmatched pairs. 1008 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr15:28,655,977
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 491529 as yet unmatched pairs. 39111 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr15:34,382,903
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 489990 as yet unmatched pairs. 37572 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr15:40,770,623
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 488092 as yet unmatched pairs. 35672 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr15:43,361,141
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 484650 as yet unmatched pairs. 32227 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr15:44,289,232
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 482606 as yet unmatched pairs. 30178 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr15:51,094,439
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 480670 as yet unmatched pairs. 28240 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr15:62,761,729
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 477265 as yet unmatched pairs. 24834 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr15:65,717,936
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 474278 as yet unmatched pairs. 21846 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr15:72,200,541
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 472148 as yet unmatched pairs. 19716 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr15:73,998,055
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 470611 as yet unmatched pairs. 18178 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr15:74,196,062
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 465473 as yet unmatched pairs. 13040 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr15:75,676,129
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 464185 as yet unmatched pairs. 11752 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr15:81,308,680
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 460220 as yet unmatched pairs. 7787 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr15:85,581,660
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 458950 as yet unmatched pairs. 6517 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr15:90,067,421
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 456036 as yet unmatched pairs. 3599 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr15:99,156,153
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 453221 as yet unmatched pairs. 782 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 2s. Last read position: chr16:546,856
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 450937 as yet unmatched pairs. 72831 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr16:1,446,209
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 447544 as yet unmatched pairs. 69437 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr16:2,072,352
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 444103 as yet unmatched pairs. 65996 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr16:2,112,705
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 440994 as yet unmatched pairs. 62887 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,777
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 438804 as yet unmatched pairs. 60695 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr16:2,930,570
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 436688 as yet unmatched pairs. 58576 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr16:4,337,113
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 433208 as yet unmatched pairs. 55095 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr16:10,969,291
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 429897 as yet unmatched pairs. 51784 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr16:14,925,722
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 428446 as yet unmatched pairs. 50332 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr16:15,434,587
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 427133 as yet unmatched pairs. 49018 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr16:16,326,865
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 425939 as yet unmatched pairs. 47823 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr16:18,318,369
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 424759 as yet unmatched pairs. 46643 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr16:18,383,108
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 424193 as yet unmatched pairs. 46077 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr16:21,402,415
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 421919 as yet unmatched pairs. 43803 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr16:21,835,803
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 423947 as yet unmatched pairs. 45831 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,930
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 420619 as yet unmatched pairs. 42503 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr16:28,106,102
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 418333 as yet unmatched pairs. 40216 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr16:28,985,297
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 415710 as yet unmatched pairs. 37592 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr16:29,806,781
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 415548 as yet unmatched pairs. 37428 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr16:30,069,889
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 412678 as yet unmatched pairs. 34558 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr16:30,583,325
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 410066 as yet unmatched pairs. 31945 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 2s. Last read position: chr16:30,965,064
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 407570 as yet unmatched pairs. 29449 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr16:31,190,976
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 405496 as yet unmatched pairs. 27375 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr16:53,704,170
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 402252 as yet unmatched pairs. 24127 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr16:56,932,294
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 399719 as yet unmatched pairs. 21594 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr16:67,174,305
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 396882 as yet unmatched pairs. 18756 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr16:67,943,915
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 393894 as yet unmatched pairs. 15768 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr16:70,398,440
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 391318 as yet unmatched pairs. 13192 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr16:74,606,835
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 388585 as yet unmatched pairs. 10455 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr16:84,181,154
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 385832 as yet unmatched pairs. 7697 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr16:88,714,131
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 382905 as yet unmatched pairs. 4768 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr16:89,561,307
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 381481 as yet unmatched pairs. 3344 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr17:1,471,054
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 376939 as yet unmatched pairs. 105363 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr17:2,324,802
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 373657 as yet unmatched pairs. 102081 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr17:4,932,830
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 371029 as yet unmatched pairs. 99453 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr17:7,220,054
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 369038 as yet unmatched pairs. 97462 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr17:7,466,494
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 367052 as yet unmatched pairs. 95475 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr17:7,884,896
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 363527 as yet unmatched pairs. 91949 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr17:9,959,217
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 361501 as yet unmatched pairs. 89921 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr17:17,171,786
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 358852 as yet unmatched pairs. 87271 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr17:18,603,608
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 355479 as yet unmatched pairs. 83898 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr17:28,364,428
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 352797 as yet unmatched pairs. 81214 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr17:29,115,707
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 350962 as yet unmatched pairs. 79378 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr17:32,876,796
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 347871 as yet unmatched pairs. 76285 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr17:38,014,215
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 345855 as yet unmatched pairs. 74269 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,186
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 344462 as yet unmatched pairs. 72876 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr17:40,094,110
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 341224 as yet unmatched pairs. 69637 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr17:42,020,145
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 337977 as yet unmatched pairs. 66390 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr17:42,727,682
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 335226 as yet unmatched pairs. 63638 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr17:44,398,201
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 332360 as yet unmatched pairs. 60772 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr17:46,932,025
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 329722 as yet unmatched pairs. 58134 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,056,586
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 327148 as yet unmatched pairs. 55560 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,819
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 330241 as yet unmatched pairs. 58645 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,096
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 350032 as yet unmatched pairs. 78436 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,231
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 331865 as yet unmatched pairs. 60269 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,012
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 338490 as yet unmatched pairs. 66894 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,426
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 333060 as yet unmatched pairs. 61464 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,839
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 330636 as yet unmatched pairs. 59040 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,426
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 326670 as yet unmatched pairs. 55073 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,572
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 332339 as yet unmatched pairs. 60742 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,326
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 332024 as yet unmatched pairs. 60427 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,731
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 325535 as yet unmatched pairs. 53925 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,556
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 304190 as yet unmatched pairs. 32580 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr17:57,841,235
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 292849 as yet unmatched pairs. 21239 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr17:62,516,647
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 290300 as yet unmatched pairs. 18690 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr17:65,056,352
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 288345 as yet unmatched pairs. 16732 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr17:73,285,689
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 285760 as yet unmatched pairs. 14144 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr17:75,624,781
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 282511 as yet unmatched pairs. 10893 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr17:76,736,372
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 280066 as yet unmatched pairs. 8447 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr17:80,010,464
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 277178 as yet unmatched pairs. 5559 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr17:81,700,717
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 274618 as yet unmatched pairs. 2999 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr18:3,450,416
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 271396 as yet unmatched pairs. 11604 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr18:21,573,716
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 268306 as yet unmatched pairs. 8514 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr18:45,839,053
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 265877 as yet unmatched pairs. 6084 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr18:57,611,658
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 263571 as yet unmatched pairs. 3778 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr18:79,410,620
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 260511 as yet unmatched pairs. 716 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr19:1,056,953
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 257010 as yet unmatched pairs. 109220 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr19:1,465,707
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 254049 as yet unmatched pairs. 106258 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr19:2,247,007
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 250740 as yet unmatched pairs. 102949 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr19:3,543,583
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 247655 as yet unmatched pairs. 99864 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr19:4,664,875
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 244349 as yet unmatched pairs. 96557 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr19:5,713,214
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 241644 as yet unmatched pairs. 93845 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr19:7,641,852
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 238461 as yet unmatched pairs. 90661 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr19:10,256,711
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 235857 as yet unmatched pairs. 88057 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr19:11,035,076
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 233199 as yet unmatched pairs. 85399 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr19:11,666,909
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 230265 as yet unmatched pairs. 82464 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr19:13,088,017
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 228040 as yet unmatched pairs. 80238 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr19:14,381,424
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 224247 as yet unmatched pairs. 76444 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr19:15,185,544
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 221703 as yet unmatched pairs. 73900 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 2s. Last read position: chr19:15,272,876
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 218865 as yet unmatched pairs. 71061 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 2s. Last read position: chr19:16,890,393
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 215644 as yet unmatched pairs. 67839 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr19:17,942,781
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 212972 as yet unmatched pairs. 65167 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr19:18,870,106
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 209705 as yet unmatched pairs. 61899 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr19:32,607,768
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 206970 as yet unmatched pairs. 59164 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr19:35,725,538
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 203075 as yet unmatched pairs. 55268 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr19:38,142,608
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 200042 as yet unmatched pairs. 52235 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr19:39,389,541
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 197365 as yet unmatched pairs. 49557 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr19:39,876,772
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 194696 as yet unmatched pairs. 46888 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr19:40,627,255
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 192246 as yet unmatched pairs. 44438 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr19:41,342,040
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 189977 as yet unmatched pairs. 42169 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr19:42,236,878
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 186667 as yet unmatched pairs. 38859 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr19:42,287,644
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 185118 as yet unmatched pairs. 37309 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr19:43,475,308
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 180873 as yet unmatched pairs. 33059 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr19:45,351,909
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 177655 as yet unmatched pairs. 29841 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr19:45,821,154
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 175048 as yet unmatched pairs. 27234 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr19:47,320,300
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 171951 as yet unmatched pairs. 24137 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr19:48,629,032
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 170651 as yet unmatched pairs. 22837 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr19:49,108,347
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 170968 as yet unmatched pairs. 23154 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr19:49,652,066
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 163393 as yet unmatched pairs. 15578 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr19:50,413,817
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 160716 as yet unmatched pairs. 12901 records in RAM.
INFO 2026-06-08 09:02:13 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr19:54,180,983
INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 158379 as yet unmatched pairs. 10564 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr19:55,230,640
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 155469 as yet unmatched pairs. 7654 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr19:55,517,786
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 153978 as yet unmatched pairs. 6163 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr19:57,284,627
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 150209 as yet unmatched pairs. 2394 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr20:1,305,850
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 147017 as yet unmatched pairs. 31464 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr20:3,785,364
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 144185 as yet unmatched pairs. 28631 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr20:17,659,132
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 141313 as yet unmatched pairs. 25759 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr20:31,561,648
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 138916 as yet unmatched pairs. 23362 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr20:35,277,781
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 136804 as yet unmatched pairs. 21250 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr20:36,863,237
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 133538 as yet unmatched pairs. 17984 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr20:44,066,044
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 131309 as yet unmatched pairs. 15755 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr20:45,840,723
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 128590 as yet unmatched pairs. 13036 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr20:49,271,428
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 125382 as yet unmatched pairs. 9828 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr20:58,651,994
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 122464 as yet unmatched pairs. 6909 records in RAM.
INFO 2026-06-08 09:02:35 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,472
INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 120530 as yet unmatched pairs. 4970 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr20:63,959,788
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 116199 as yet unmatched pairs. 639 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,034
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 114793 as yet unmatched pairs. 28525 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,914
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 113266 as yet unmatched pairs. 26993 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,032
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 112849 as yet unmatched pairs. 26572 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,286
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 110173 as yet unmatched pairs. 23893 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr21:26,051,037
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 108602 as yet unmatched pairs. 22320 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr21:34,792,129
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 105641 as yet unmatched pairs. 19359 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr21:43,416,723
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 103228 as yet unmatched pairs. 16946 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr21:45,468,720
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 99566 as yet unmatched pairs. 13284 records in RAM.
INFO 2026-06-08 09:02:49 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr21:45,991,972
INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 99691 as yet unmatched pairs. 13409 records in RAM.
INFO 2026-06-08 09:02:51 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr21:46,003,776
INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 95492 as yet unmatched pairs. 9209 records in RAM.
INFO 2026-06-08 09:02:53 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr21:46,120,537
INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 94781 as yet unmatched pairs. 8498 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr21:46,246,676
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 88306 as yet unmatched pairs. 2023 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 2s. Last read position: chr22:20,131,875
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 84874 as yet unmatched pairs. 41490 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr22:24,623,791
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 81811 as yet unmatched pairs. 38427 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr22:31,091,088
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 79940 as yet unmatched pairs. 36555 records in RAM.
INFO 2026-06-08 09:03:01 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr22:36,289,131
INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 77001 as yet unmatched pairs. 33616 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr22:37,568,218
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 75660 as yet unmatched pairs. 32275 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr22:37,877,908
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 72156 as yet unmatched pairs. 28771 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr22:38,715,933
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 68272 as yet unmatched pairs. 24886 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr22:39,521,655
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 73027 as yet unmatched pairs. 29641 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr22:40,953,498
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 62825 as yet unmatched pairs. 19439 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr22:41,577,080
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 60280 as yet unmatched pairs. 16894 records in RAM.
INFO 2026-06-08 09:05:19 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 128s. Last read position: chr22:42,693,306
INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 57738 as yet unmatched pairs. 14352 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 1s. Last read position: chr22:46,356,950
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 54334 as yet unmatched pairs. 10948 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 2s. Last read position: chr22:50,240,234
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 52088 as yet unmatched pairs. 8702 records in RAM.
INFO 2026-06-08 09:05:24 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 1s. Last read position: chr22:50,312,614
INFO 2026-06-08 09:05:24 MarkDuplicates Tracking 48346 as yet unmatched pairs. 4960 records in RAM.
INFO 2026-06-08 09:05:26 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr22:50,530,398
INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 44990 as yet unmatched pairs. 1604 records in RAM.
INFO 2026-06-08 09:05:27 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chrX:2,723,331
INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 44148 as yet unmatched pairs. 32639 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:56s. Time for last 1,000,000: 1s. Last read position: chrX:23,730,926
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 39406 as yet unmatched pairs. 27890 records in RAM.
INFO 2026-06-08 09:05:30 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chrX:47,144,494
INFO 2026-06-08 09:05:30 MarkDuplicates Tracking 37002 as yet unmatched pairs. 25484 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 1s. Last read position: chrX:48,823,187
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 35024 as yet unmatched pairs. 23506 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chrX:53,214,727
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 32347 as yet unmatched pairs. 20829 records in RAM.
INFO 2026-06-08 09:05:35 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chrX:63,706,292
INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 29366 as yet unmatched pairs. 17848 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chrX:72,130,162
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 27144 as yet unmatched pairs. 15626 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chrX:101,412,194
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 24350 as yet unmatched pairs. 12832 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chrX:121,049,170
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 21755 as yet unmatched pairs. 10237 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 1s. Last read position: chrX:149,486,969
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 19906 as yet unmatched pairs. 8387 records in RAM.
INFO 2026-06-08 09:05:43 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chrX:154,030,344
INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 16805 as yet unmatched pairs. 5286 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chrX:154,364,829
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 14740 as yet unmatched pairs. 3221 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chrX:155,457,985
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 11564 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,324
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 8682 as yet unmatched pairs. 137 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,441
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 8654 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,011
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 6618 as yet unmatched pairs. 6605 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: KI270733.1:169,967
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 682 as yet unmatched pairs. 669 records in RAM.
INFO 2026-06-08 09:05:51 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 0s. Last read position: KI270733.1:178,678
INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 17 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 526244014 records. 0 pairs never matched.
INFO 2026-06-08 09:05:58 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140536; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:05:58 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:06:05 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:06:05 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:07:17 OpticalDuplicateFinder Large duplicate set. size = 1470
INFO 2026-06-08 09:07:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,517
INFO 2026-06-08 09:07:17 OpticalDuplicateFinder Large duplicate set. size = 1259
INFO 2026-06-08 09:07:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,955
INFO 2026-06-08 09:07:17 OpticalDuplicateFinder Large duplicate set. size = 1109
INFO 2026-06-08 09:07:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,336
INFO 2026-06-08 09:07:17 OpticalDuplicateFinder Large duplicate set. size = 1184
INFO 2026-06-08 09:07:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,105
INFO 2026-06-08 09:07:34 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:07:34 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:08:28 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:08:35 MarkDuplicates After generateDuplicateIndexes freeMemory: 203981528; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:08:35 MarkDuplicates Marking 398964050 records as duplicates.
INFO 2026-06-08 09:08:35 MarkDuplicates Found 8439479 optical duplicate clusters.
INFO 2026-06-08 09:08:35 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:08:51 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:39,385,834
INFO 2026-06-08 09:09:07 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 15s. Last read position: chr1:146,691,011
INFO 2026-06-08 09:09:23 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:48s. Time for last 10,000,000: 15s. Last read position: chr1:154,558,350
INFO 2026-06-08 09:09:39 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:03s. Time for last 10,000,000: 15s. Last read position: chr1:171,784,026
INFO 2026-06-08 09:09:55 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:19s. Time for last 10,000,000: 15s. Last read position: chr1:207,752,232
INFO 2026-06-08 09:10:11 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:35s. Time for last 10,000,000: 15s. Last read position: chr2:29,223,435
INFO 2026-06-08 09:10:26 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:50s. Time for last 10,000,000: 15s. Last read position: chr2:69,245,224
INFO 2026-06-08 09:10:41 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:06s. Time for last 10,000,000: 15s. Last read position: chr2:189,075,424
INFO 2026-06-08 09:10:57 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:21s. Time for last 10,000,000: 15s. Last read position: chr2:219,282,890
INFO 2026-06-08 09:11:13 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:37s. Time for last 10,000,000: 15s. Last read position: chr3:48,570,313
INFO 2026-06-08 09:11:28 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:53s. Time for last 10,000,000: 15s. Last read position: chr3:123,700,451
INFO 2026-06-08 09:11:44 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:08s. Time for last 10,000,000: 15s. Last read position: chr4:3,132,646
INFO 2026-06-08 09:12:00 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:24s. Time for last 10,000,000: 15s. Last read position: chr5:14,291,098
INFO 2026-06-08 09:12:16 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:40s. Time for last 10,000,000: 16s. Last read position: chr5:140,505,771
INFO 2026-06-08 09:12:33 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:57s. Time for last 10,000,000: 16s. Last read position: chr5:177,536,479
INFO 2026-06-08 09:12:48 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:12s. Time for last 10,000,000: 15s. Last read position: chr6:32,067,778
INFO 2026-06-08 09:13:03 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:28s. Time for last 10,000,000: 15s. Last read position: chr6:106,640,360
INFO 2026-06-08 09:13:19 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:43s. Time for last 10,000,000: 15s. Last read position: chr7:11,541,468
INFO 2026-06-08 09:13:35 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:00s. Time for last 10,000,000: 16s. Last read position: chr7:100,872,703
INFO 2026-06-08 09:13:51 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:15s. Time for last 10,000,000: 15s. Last read position: chr7:150,951,784
INFO 2026-06-08 09:14:08 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:32s. Time for last 10,000,000: 16s. Last read position: chr8:63,180,499
INFO 2026-06-08 09:14:25 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:49s. Time for last 10,000,000: 16s. Last read position: chr8:144,851,023
INFO 2026-06-08 09:14:41 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:06s. Time for last 10,000,000: 16s. Last read position: chr9:121,282,486
INFO 2026-06-08 09:14:58 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:23s. Time for last 10,000,000: 16s. Last read position: chr10:871,113
INFO 2026-06-08 09:15:15 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:40s. Time for last 10,000,000: 17s. Last read position: chr10:84,513,873
INFO 2026-06-08 09:15:31 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:56s. Time for last 10,000,000: 15s. Last read position: chr11:2,317,828
INFO 2026-06-08 09:15:47 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:11s. Time for last 10,000,000: 15s. Last read position: chr11:57,795,620
INFO 2026-06-08 09:16:03 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:27s. Time for last 10,000,000: 15s. Last read position: chr11:67,611,115
INFO 2026-06-08 09:16:18 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:43s. Time for last 10,000,000: 15s. Last read position: chr11:128,974,862
INFO 2026-06-08 09:16:34 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:58s. Time for last 10,000,000: 15s. Last read position: chr12:52,054,829
INFO 2026-06-08 09:16:49 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:14s. Time for last 10,000,000: 15s. Last read position: chr12:76,030,587
INFO 2026-06-08 09:17:05 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:29s. Time for last 10,000,000: 15s. Last read position: chr13:20,596,226
INFO 2026-06-08 09:17:20 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:45s. Time for last 10,000,000: 15s. Last read position: chr14:68,790,248
INFO 2026-06-08 09:17:36 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:00s. Time for last 10,000,000: 15s. Last read position: chr15:28,655,977
INFO 2026-06-08 09:17:51 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:16s. Time for last 10,000,000: 15s. Last read position: chr15:74,196,062
INFO 2026-06-08 09:18:07 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:31s. Time for last 10,000,000: 15s. Last read position: chr16:2,761,777
INFO 2026-06-08 09:18:22 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:47s. Time for last 10,000,000: 15s. Last read position: chr16:21,835,803
INFO 2026-06-08 09:18:38 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:02s. Time for last 10,000,000: 15s. Last read position: chr16:56,932,294
INFO 2026-06-08 09:18:53 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:18s. Time for last 10,000,000: 15s. Last read position: chr17:4,932,830
INFO 2026-06-08 09:19:09 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:33s. Time for last 10,000,000: 15s. Last read position: chr17:38,014,215
INFO 2026-06-08 09:19:24 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:49s. Time for last 10,000,000: 15s. Last read position: chr17:50,189,231
INFO 2026-06-08 09:19:40 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:05s. Time for last 10,000,000: 16s. Last read position: chr17:62,516,647
INFO 2026-06-08 09:19:56 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:20s. Time for last 10,000,000: 15s. Last read position: chr18:57,611,658
INFO 2026-06-08 09:20:12 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:36s. Time for last 10,000,000: 15s. Last read position: chr19:11,035,076
INFO 2026-06-08 09:20:27 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:52s. Time for last 10,000,000: 15s. Last read position: chr19:35,725,538
INFO 2026-06-08 09:20:43 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:08s. Time for last 10,000,000: 15s. Last read position: chr19:45,821,154
INFO 2026-06-08 09:20:59 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:23s. Time for last 10,000,000: 15s. Last read position: chr20:1,305,850
INFO 2026-06-08 09:21:14 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:39s. Time for last 10,000,000: 15s. Last read position: chr20:62,813,472
INFO 2026-06-08 09:21:29 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:54s. Time for last 10,000,000: 15s. Last read position: chr21:45,991,972
INFO 2026-06-08 09:21:45 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:10s. Time for last 10,000,000: 15s. Last read position: chr22:38,715,933
INFO 2026-06-08 09:22:01 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:25s. Time for last 10,000,000: 15s. Last read position: chrX:23,730,926
INFO 2026-06-08 09:22:17 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:41s. Time for last 10,000,000: 15s. Last read position: chrX:154,364,829
INFO 2026-06-08 09:22:35 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:59s. Time for last 10,000,000: 17s. Last read position: */*
INFO 2026-06-08 09:22:35 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:22:35 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:22:35 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:22:35 MarkDuplicates Before output close freeMemory: 203964544; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:22:35 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:22:35 MarkDuplicates After output close freeMemory: 104193280; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:22:35 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 34.07 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory