File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/0abb93a479497c8010a6733832c59d/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (659_bNS-T1-TRNA-1_A23MVY2LT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/5e87ad9f2b92038a203a50ec5061e2/659_bNS-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/0abb93a479497c8010a6733832c59d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/486aec410fed2a0a5941a018ee2bde/659_bNS-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/0abb93a479497c8010a6733832c59d/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 373061638
[W::hts_idx_load3] The index file is older than the data file: 659_bNS-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	373061638
Known Splicing Events:	369638475
Partial Novel Splicing Events:	1868833
Novel Splicing Events:	1395579
Filtered Splicing Events:	158751

Total splicing  Junctions:	584637
Known Splicing Junctions:	277090
Partial Novel Splicing Junctions:	156431
Novel Splicing Junctions:	151116

===================================================================
Create BED file ...
Create Interact file ...