Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/ba29237b19a48bd0059774177ae6f4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/ba29237b19a48bd0059774177ae6f4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/68760a8224d2801d3a953c83ecc6d9/659_dc8-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 291659505
unpaired = 6171323
MERGED PAIRED END READS = 291659505
MATES PROCESSED = 589490333
TOTAL READS     = 297830828
DISTINCT READS  = 1.04301e+08
DISTINCT COUNTS = 1052
MAX COUNT       = 1429408
COUNTS OF 1     = 3.96495e+07
MAX TERMS       = 100
OBSERVED COUNTS (1429409)
1	39649473
2	24225870
3	15190438
4	9292936
5	5632166
6	3434397
7	2127946
8	1352549
9	884529
10	595674
11	414386
12	296365
13	216445
14	161834
15	123829
16	96097
17	77419
18	61901
19	50605
20	42189
21	35669
22	30581
23	26020
24	23000
25	19783
26	17400
27	15501
28	13716
29	12400
30	10934
31	10025
32	9091
33	8388
34	7548
35	6880
36	6452
37	5792
38	5505
39	5015
40	4565
41	4380
42	4003
43	3862
44	3611
45	3374
46	3137
47	2884
48	2754
49	2504
50	2461
51	2316
52	2217
53	2133
54	1999
55	1771
56	1798
57	1675
58	1627
59	1452
60	1458
61	1400
62	1337
63	1328
64	1208
65	1135
66	1128
67	1090
68	1054
69	1026
70	948
71	901
72	914
73	811
74	818
75	805
76	765
77	739
78	682
79	695
80	629
81	620
82	653
83	574
84	584
85	588
86	501
87	519
88	486
89	483
90	475
91	515
92	466
93	423
94	396
95	429
96	418
97	378
98	405
99	371
100	363
101	367
102	320
103	338
104	302
105	299
106	304
107	275
108	281
109	279
110	240
111	293
112	277
113	242
114	240
115	265
116	252
117	218
118	189
119	216
120	197
121	236
122	213
123	218
124	210
125	186
126	177
127	192
128	173
129	185
130	172
131	157
132	168
133	163
134	156
135	172
136	158
137	159
138	140
139	136
140	141
141	131
142	148
143	124
144	126
145	134
146	138
147	109
148	134
149	110
150	101
151	116
152	133
153	113
154	111
155	107
156	96
157	89
158	106
159	95
160	96
161	93
162	82
163	103
164	90
165	70
166	84
167	90
168	91
169	71
170	79
171	96
172	86
173	81
174	73
175	74
176	70
177	73
178	74
179	73
180	63
181	60
182	72
183	75
184	75
185	65
186	95
187	69
188	60
189	65
190	58
191	66
192	59
193	44
194	71
195	44
196	52
197	64
198	54
199	54
200	60
201	60
202	50
203	54
204	39
205	60
206	37
207	50
208	45
209	44
210	65
211	41
212	35
213	44
214	48
215	40
216	36
217	48
218	31
219	41
220	40
221	47
222	47
223	32
224	50
225	37
226	35
227	36
228	46
229	34
230	42
231	37
232	24
233	36
234	37
235	27
236	36
237	41
238	37
239	47
240	23
241	18
242	26
243	24
244	25
245	27
246	35
247	40
248	23
249	31
250	19
251	27
252	26
253	18
254	22
255	31
256	12
257	22
258	35
259	22
260	24
261	23
262	34
263	20
264	16
265	19
266	26
267	30
268	25
269	29
270	27
271	30
272	26
273	15
274	24
275	27
276	13
277	19
278	19
279	22
280	21
281	17
282	21
283	22
284	8
285	28
286	19
287	26
288	21
289	16
290	16
291	22
292	21
293	16
294	27
295	13
296	20
297	18
298	16
299	19
300	9
301	16
302	23
303	11
304	22
305	24
306	12
307	13
308	10
309	19
310	10
311	18
312	14
313	12
314	19
315	14
316	14
317	14
318	14
319	24
320	9
321	20
322	11
323	9
324	11
325	16
326	14
327	8
328	10
329	6
330	15
331	15
332	13
333	13
334	16
335	10
336	11
337	9
338	10
339	12
340	15
341	18
342	14
343	12
344	16
345	12
346	6
347	11
348	8
349	5
350	13
351	8
352	5
353	12
354	14
355	6
356	8
357	10
358	8
359	6
360	13
361	13
362	14
363	10
364	5
365	6
366	13
367	11
368	8
369	9
370	10
371	12
372	9
373	14
374	10
375	8
376	8
377	6
378	7
379	4
380	7
381	7
382	8
383	11
384	8
385	7
386	3
387	10
388	6
389	8
390	4
391	6
392	8
393	11
394	8
395	8
396	12
397	10
398	5
399	3
400	8
401	9
402	5
403	6
404	6
405	5
406	10
407	10
408	9
409	9
410	10
411	10
412	4
413	9
414	5
415	9
416	5
417	11
418	9
419	4
420	5
421	7
422	3
423	5
424	5
425	9
426	5
427	6
428	10
429	3
430	8
431	11
432	11
433	7
434	3
435	8
436	3
437	3
438	5
439	5
440	5
441	5
442	2
443	9
444	6
445	7
446	3
447	6
448	4
449	4
450	8
451	3
452	7
453	10
454	2
455	5
456	9
457	9
458	7
459	1
460	2
461	7
462	4
463	6
464	4
465	5
466	2
467	2
468	3
469	2
470	2
471	5
472	5
473	2
474	4
475	2
476	7
477	3
478	8
479	5
480	3
481	5
482	3
483	4
484	5
485	4
486	5
487	4
488	3
489	2
490	4
491	4
492	2
493	3
494	3
495	6
496	5
497	4
498	5
499	4
500	5
501	6
502	5
503	3
504	3
505	4
506	2
507	6
508	2
509	5
510	4
511	3
512	2
513	2
514	3
515	4
516	2
517	3
518	3
519	2
520	1
522	5
523	2
524	5
525	9
526	3
527	2
528	2
529	1
530	4
531	3
532	4
533	2
534	2
535	1
536	1
537	5
538	6
539	4
540	2
541	3
542	2
543	1
544	4
545	3
546	6
547	3
548	2
549	3
550	2
551	1
552	2
553	6
554	5
555	1
556	2
557	3
558	4
559	3
560	1
561	6
562	1
564	2
565	2
566	3
567	1
568	1
569	3
570	3
572	1
573	1
574	4
575	1
576	3
577	5
578	3
579	2
580	3
581	1
582	3
584	3
585	3
586	4
587	5
588	3
589	2
590	5
591	5
592	3
593	3
594	1
595	3
596	4
597	1
599	2
601	1
602	1
603	3
604	2
605	2
606	1
607	1
608	2
609	2
611	1
612	3
613	3
614	1
615	1
617	2
618	2
619	2
621	5
622	2
623	2
624	1
625	1
626	5
627	8
628	3
629	2
630	2
631	4
632	1
633	4
634	2
635	2
637	1
639	3
640	2
641	1
642	6
643	1
644	2
645	2
646	1
647	2
648	1
650	1
652	1
654	4
655	2
656	3
657	5
658	1
660	1
661	2
662	2
663	1
666	1
668	1
670	1
671	1
672	2
673	2
674	1
675	1
676	2
677	2
678	4
680	4
682	1
683	6
684	2
687	3
689	1
690	1
692	1
693	2
694	4
695	2
696	2
698	2
699	2
700	1
702	2
704	3
705	2
706	3
707	2
708	1
709	3
710	1
712	2
715	1
716	1
717	2
718	1
719	1
722	1
723	1
724	1
725	1
728	2
729	1
732	2
733	3
735	1
736	1
739	1
740	1
742	2
746	1
747	2
748	1
749	3
751	1
753	1
754	1
756	1
757	1
758	1
760	1
765	1
769	1
770	1
773	1
775	2
777	1
778	1
779	2
780	1
782	1
784	2
785	1
786	2
788	1
789	1
790	1
791	1
792	1
796	2
798	1
799	2
801	2
803	2
806	1
807	1
809	1
810	1
811	1
812	2
815	1
817	1
819	1
820	1
822	1
826	1
828	2
830	4
831	1
833	1
835	1
836	1
837	1
839	1
840	2
843	2
845	1
846	1
848	3
849	3
850	2
851	1
852	1
853	2
854	1
855	1
859	1
860	1
861	1
862	2
869	2
870	1
871	1
872	2
873	1
877	1
878	1
880	1
882	1
886	1
890	1
892	1
895	1
899	1
902	1
904	1
908	1
911	1
913	2
916	1
917	1
919	2
921	1
925	2
927	1
929	1
930	2
933	1
935	2
937	1
938	2
941	1
942	1
949	1
951	1
953	1
967	2
968	1
969	1
970	1
971	1
975	1
980	1
981	1
984	2
986	1
994	1
998	1
999	2
1000	1
1001	1
1005	1
1008	1
1012	1
1013	1
1015	1
1017	1
1020	1
1023	1
1024	1
1027	2
1028	1
1032	2
1035	2
1041	1
1044	1
1047	1
1055	1
1062	1
1067	1
1068	2
1069	1
1074	1
1082	1
1084	1
1085	1
1088	1
1101	1
1103	1
1105	1
1112	1
1113	1
1115	1
1117	2
1118	1
1119	1
1126	1
1135	1
1136	1
1140	1
1141	1
1148	1
1150	1
1152	1
1156	1
1162	1
1167	1
1169	1
1175	1
1183	1
1184	1
1193	1
1195	1
1208	2
1210	1
1211	1
1215	1
1219	1
1222	1
1223	1
1230	1
1241	1
1251	1
1253	1
1257	1
1258	1
1268	1
1271	1
1275	1
1276	1
1283	1
1287	2
1290	1
1295	2
1304	1
1305	1
1314	1
1339	1
1354	1
1356	1
1372	1
1376	1
1377	1
1385	1
1386	1
1405	2
1417	1
1424	1
1425	1
1430	1
1436	1
1437	1
1443	1
1444	1
1454	1
1455	1
1468	1
1471	1
1482	1
1483	1
1491	2
1511	1
1513	1
1518	1
1526	1
1529	1
1532	1
1536	1
1548	1
1554	1
1560	1
1561	1
1568	1
1575	1
1586	1
1592	1
1599	1
1609	1
1610	1
1613	1
1624	1
1633	1
1648	1
1650	1
1652	1
1658	1
1672	1
1677	1
1680	1
1693	1
1706	1
1715	1
1717	1
1732	1
1742	1
1749	1
1760	1
1767	1
1771	1
1791	1
1795	1
1830	1
1835	1
1898	1
1905	1
1912	1
1913	1
1916	1
1938	1
1955	1
1963	1
1965	1
1966	1
2034	1
2047	1
2048	1
2051	1
2052	1
2065	1
2071	1
2094	1
2096	1
2100	1
2103	1
2111	1
2112	1
2114	1
2125	1
2129	1
2147	1
2166	1
2169	1
2187	1
2196	1
2197	1
2217	1
2225	1
2249	1
2270	1
2288	1
2333	1
2341	1
2381	1
2395	1
2399	1
2406	1
2434	1
2439	1
2462	1
2473	1
2478	1
2506	1
2520	1
2555	1
2559	1
2580	1
2587	1
2603	1
2621	1
2698	1
2699	1
2722	1
2726	1
2744	1
2795	1
2833	1
2859	1
2863	1
2898	1
2907	1
3159	1
3164	1
3231	2
3322	1
3365	1
3462	1
3527	1
3614	1
3702	1
3916	1
4119	1
4252	1
4625	1
5113	1
5917	1
6658	1
9195	1
15819	1
17157	1
61332	1
1429408	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.................................._.....................................
........._............_........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]