Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/f94b28d8177463291647206793471b/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/e66806826507142bfda1d75fea14f4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/e66806826507142bfda1d75fea14f4/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory