Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/08673ee12ee6a0211e830547e14205/659_bCu-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/ac204485ce270f77937b89e3fdaa08/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/ac204485ce270f77937b89e3fdaa08/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/4d11b394d48aa0fc84d79c8c8c6711/659_bCu-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 220603188
[W::hts_idx_load3] The index file is older than the data file: 659_bCu-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	220603188
Known Splicing Events:	218218538
Partial Novel Splicing Events:	1436385
Novel Splicing Events:	833743
Filtered Splicing Events:	114522

Total splicing  Junctions:	312980
Known Splicing Junctions:	208646
Partial Novel Splicing Junctions:	58901
Novel Splicing Junctions:	45433

===================================================================
Create BED file ...
Create Interact file ...