Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/d91a92431ec552fe6e1b7bdffbc5a2/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/d91a92431ec552fe6e1b7bdffbc5a2/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/4135d356b368ca996d5b2887afe346/659_bGc-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bGc-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGc-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_bGc-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:39:45.929 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:39:45 GMT 2026] MarkDuplicates --INPUT 659_bGc-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGc-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_bGc-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:39:45 GMT 2026] Executing as ?@nf-8dd91a92431ec552fe6e1b7bdffbc5a2-41c44-t8bp6 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:39:46 MarkDuplicates Start of doWork freeMemory: 105826896; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:39:46 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:39:46 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,354,052
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 3673 as yet unmatched pairs. 659 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:2,229,649
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 6545 as yet unmatched pairs. 373 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:6,339,578
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 9862 as yet unmatched pairs. 137 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:9,264,434
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 12794 as yet unmatched pairs. 550 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:11,964,275
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 15051 as yet unmatched pairs. 117 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:15,937,934
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 17924 as yet unmatched pairs. 351 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:19,153,815
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 20757 as yet unmatched pairs. 553 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:21,518,304
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 23173 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:21,855,855
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 27268 as yet unmatched pairs. 1056 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:22,644,128
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 30386 as yet unmatched pairs. 1329 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 4s. Last read position: chr1:25,225,047
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 32294 as yet unmatched pairs. 586 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:27,107,654
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 34543 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:28,571,879
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 37351 as yet unmatched pairs. 58 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:32,014,190
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 40783 as yet unmatched pairs. 562 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:35,192,512
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 43826 as yet unmatched pairs. 1032 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:37,612,744
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 45526 as yet unmatched pairs. 34 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:39,357,615
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 49575 as yet unmatched pairs. 1528 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:39,485,561
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 53323 as yet unmatched pairs. 2904 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:42,851,743
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 53074 as yet unmatched pairs. 96 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:44,776,126
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 59940 as yet unmatched pairs. 3890 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:46,810,938
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 61198 as yet unmatched pairs. 2402 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:52,239,018
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 61737 as yet unmatched pairs. 257 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:55,165,939
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 64489 as yet unmatched pairs. 197 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:66,924,505
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 66947 as yet unmatched pairs. 116 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:85,581,364
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 70272 as yet unmatched pairs. 898 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:94,506,573
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 72398 as yet unmatched pairs. 500 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:109,280,868
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 74568 as yet unmatched pairs. 259 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:112,701,511
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 78087 as yet unmatched pairs. 1224 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:114,725,227
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 80986 as yet unmatched pairs. 1418 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:117,402,386
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 82260 as yet unmatched pairs. 188 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:119,963,766
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 88189 as yet unmatched pairs. 3563 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:145,405,142
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 86330 as yet unmatched pairs. 151 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:146,116,004
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 88620 as yet unmatched pairs. 271 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:147,224,912
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 93716 as yet unmatched pairs. 3604 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:149,261,680
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 91506 as yet unmatched pairs. 32 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:150,553,839
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 93928 as yet unmatched pairs. 515 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:151,265,166
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 96456 as yet unmatched pairs. 266 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 2s. Last read position: chr1:152,214,657
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 99741 as yet unmatched pairs. 757 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:153,779,111
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 103197 as yet unmatched pairs. 1392 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:154,272,697
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 104519 as yet unmatched pairs. 410 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:155,058,094
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 107380 as yet unmatched pairs. 433 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:155,189,365
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 110856 as yet unmatched pairs. 1545 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:155,205,177
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 110999 as yet unmatched pairs. 215 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:155,963,168
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 114211 as yet unmatched pairs. 801 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:156,266,078
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 116805 as yet unmatched pairs. 267 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:160,031,127
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 119311 as yet unmatched pairs. 191 records in RAM.
INFO 2026-06-08 08:41:15 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:161,328,417
INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 122674 as yet unmatched pairs. 890 records in RAM.
INFO 2026-06-08 08:41:17 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:169,106,479
INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 124306 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:172,442,273
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 127046 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:180,194,383
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 132079 as yet unmatched pairs. 2679 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:183,884,833
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 132187 as yet unmatched pairs. 87 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:186,327,479
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 134713 as yet unmatched pairs. 359 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:200,850,007
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 136986 as yet unmatched pairs. 209 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:203,475,906
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 139737 as yet unmatched pairs. 274 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:205,720,604
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 143139 as yet unmatched pairs. 1117 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:206,937,543
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 146467 as yet unmatched pairs. 1853 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:207,466,714
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 146979 as yet unmatched pairs. 35 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:214,318,856
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 149642 as yet unmatched pairs. 185 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:223,752,903
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 152587 as yet unmatched pairs. 591 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:226,065,750
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 156403 as yet unmatched pairs. 1950 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:228,372,423
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 157412 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:234,608,938
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 163255 as yet unmatched pairs. 2670 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:243,613,719
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 165191 as yet unmatched pairs. 1891 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 3s. Last read position: chr2:3,388,592
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 166742 as yet unmatched pairs. 166343 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:17,707,258
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 168730 as yet unmatched pairs. 168326 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr2:24,673,452
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 171742 as yet unmatched pairs. 171323 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:27,237,772
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 174396 as yet unmatched pairs. 173975 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:30,234,415
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 178931 as yet unmatched pairs. 178506 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,259
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 249780 as yet unmatched pairs. 174349 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 737116 as yet unmatched pairs. 151649 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,379
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 1333524 as yet unmatched pairs. 124799 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 1382046 as yet unmatched pairs. 122255 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:33,257,381
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 1461471 as yet unmatched pairs. 118942 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:40,429,278
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 1458210 as yet unmatched pairs. 115672 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:43,974,662
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 1455541 as yet unmatched pairs. 112990 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:46,543,075
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 1452711 as yet unmatched pairs. 110153 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:54,631,043
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 1452657 as yet unmatched pairs. 110085 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:55,672,004
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 1447209 as yet unmatched pairs. 104633 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:65,313,741
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 1444922 as yet unmatched pairs. 102344 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:73,080,752
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 1442138 as yet unmatched pairs. 99555 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:75,654,908
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 1439589 as yet unmatched pairs. 97004 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:85,659,634
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 1472660 as yet unmatched pairs. 130062 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:85,662,096
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 1469172 as yet unmatched pairs. 126571 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:85,663,813
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 1464224 as yet unmatched pairs. 121620 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:85,665,653
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 1473753 as yet unmatched pairs. 131147 records in RAM.
INFO 2026-06-08 08:42:23 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:85,667,106
INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 1457151 as yet unmatched pairs. 114542 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:87,782,536
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 1422504 as yet unmatched pairs. 79890 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:96,867,783
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 1420204 as yet unmatched pairs. 77590 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:102,165,214
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 1417826 as yet unmatched pairs. 75198 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:108,773,002
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 1415607 as yet unmatched pairs. 72973 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:112,028,546
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 1414064 as yet unmatched pairs. 71423 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:119,920,127
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 1412010 as yet unmatched pairs. 69367 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:131,125,796
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 1409174 as yet unmatched pairs. 66531 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:151,410,703
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 1406743 as yet unmatched pairs. 64094 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:161,993,315
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 1404470 as yet unmatched pairs. 61810 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:172,504,133
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 1401800 as yet unmatched pairs. 59126 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:178,636,660
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 1399416 as yet unmatched pairs. 56726 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:188,988,097
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 1399489 as yet unmatched pairs. 56792 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:190,649,175
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 1394025 as yet unmatched pairs. 51320 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:197,706,859
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 1391618 as yet unmatched pairs. 48906 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:203,328,445
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 1389058 as yet unmatched pairs. 46344 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:212,124,801
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 1387170 as yet unmatched pairs. 44449 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:215,367,870
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 1401170 as yet unmatched pairs. 58448 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,238
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 1400597 as yet unmatched pairs. 57873 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,569
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 1401348 as yet unmatched pairs. 58624 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:215,383,341
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 1386394 as yet unmatched pairs. 43670 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,676
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 1387690 as yet unmatched pairs. 44958 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,457
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 1388867 as yet unmatched pairs. 46135 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,188
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 1393612 as yet unmatched pairs. 50878 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:215,419,325
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 1371117 as yet unmatched pairs. 28377 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,191
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 1378886 as yet unmatched pairs. 36146 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:215,435,663
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 1387321 as yet unmatched pairs. 44580 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 2s. Last read position: chr2:217,847,934
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 1361544 as yet unmatched pairs. 18794 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:219,178,428
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 1358808 as yet unmatched pairs. 16058 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:226,798,356
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 1354365 as yet unmatched pairs. 11604 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:231,708,693
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 1353453 as yet unmatched pairs. 10681 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:237,363,304
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 1349852 as yet unmatched pairs. 7074 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:238,260,827
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 1346634 as yet unmatched pairs. 3854 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr2:241,436,496
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 1343693 as yet unmatched pairs. 906 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr3:9,820,638
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 1340920 as yet unmatched pairs. 72298 records in RAM.
INFO 2026-06-08 08:43:25 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:13,609,598
INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 1337970 as yet unmatched pairs. 69340 records in RAM.
INFO 2026-06-08 08:43:27 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:25,428,802
INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 1335121 as yet unmatched pairs. 66482 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:36,846,326
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 1332329 as yet unmatched pairs. 63689 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:39,410,784
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 1332231 as yet unmatched pairs. 63589 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:42,642,580
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 1327223 as yet unmatched pairs. 58573 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:47,062,232
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 1324390 as yet unmatched pairs. 55728 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:48,440,542
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 1321951 as yet unmatched pairs. 53286 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:49,124,485
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 1319212 as yet unmatched pairs. 50547 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:49,902,789
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 1316276 as yet unmatched pairs. 47610 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:50,565,623
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 1313268 as yet unmatched pairs. 44577 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:52,502,203
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 1311521 as yet unmatched pairs. 42813 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:57,380,358
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 1307757 as yet unmatched pairs. 39038 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:66,384,134
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 1305737 as yet unmatched pairs. 37013 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:97,872,971
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 1303065 as yet unmatched pairs. 34329 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:101,853,250
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 1301120 as yet unmatched pairs. 32384 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:119,390,814
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 1298754 as yet unmatched pairs. 29993 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:123,614,210
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 1296054 as yet unmatched pairs. 27286 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:126,988,559
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 1292970 as yet unmatched pairs. 24201 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr3:129,437,737
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 1290182 as yet unmatched pairs. 21406 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr3:133,587,918
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 1288389 as yet unmatched pairs. 19599 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:142,469,351
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 1284702 as yet unmatched pairs. 15907 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:152,445,294
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 1283119 as yet unmatched pairs. 14323 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr3:170,113,360
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 1279801 as yet unmatched pairs. 10992 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:183,153,939
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 1277447 as yet unmatched pairs. 8614 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:185,600,827
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 1274657 as yet unmatched pairs. 5807 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr3:191,380,876
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 1272202 as yet unmatched pairs. 3347 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr3:196,368,118
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 1269865 as yet unmatched pairs. 1000 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr4:1,213,540
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 1268634 as yet unmatched pairs. 54736 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:2,931,112
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 1264990 as yet unmatched pairs. 51076 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:7,855,536
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 1261461 as yet unmatched pairs. 47546 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:24,554,727
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 1258551 as yet unmatched pairs. 44625 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:25,666,199
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 1277956 as yet unmatched pairs. 64026 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:25,673,249
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 1267585 as yet unmatched pairs. 53655 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:25,676,392
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 1262943 as yet unmatched pairs. 48997 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:39,572,415
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 1248361 as yet unmatched pairs. 34404 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:48,561,590
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 1245294 as yet unmatched pairs. 31335 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:56,024,500
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 1242639 as yet unmatched pairs. 28668 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:73,090,715
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 1240651 as yet unmatched pairs. 26677 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:77,055,322
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 1239766 as yet unmatched pairs. 25788 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:85,995,451
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 1235064 as yet unmatched pairs. 21068 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr4:87,494,210
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 1233243 as yet unmatched pairs. 19239 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr4:99,316,246
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 1235200 as yet unmatched pairs. 21193 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr4:109,746,296
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 1228368 as yet unmatched pairs. 14357 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr4:122,347,658
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 1225638 as yet unmatched pairs. 11613 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 2s. Last read position: chr4:141,714,854
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 1222910 as yet unmatched pairs. 8879 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:151,175,089
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 1222183 as yet unmatched pairs. 8146 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr4:168,877,964
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 1219543 as yet unmatched pairs. 5494 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 2s. Last read position: chr4:185,310,642
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 1216027 as yet unmatched pairs. 1957 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 2s. Last read position: chr5:1,463,786
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 1214301 as yet unmatched pairs. 99897 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:13,830,108
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 1209895 as yet unmatched pairs. 95488 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:14,462,773
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 1208601 as yet unmatched pairs. 94194 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:32,126,395
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 1204973 as yet unmatched pairs. 90557 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:38,883,841
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 1202046 as yet unmatched pairs. 87624 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:43,556,660
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 1199668 as yet unmatched pairs. 85245 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:57,214,080
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 1196995 as yet unmatched pairs. 82563 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:69,372,136
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 1194214 as yet unmatched pairs. 79772 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:73,562,804
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 1192406 as yet unmatched pairs. 77960 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,164
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 1196442 as yet unmatched pairs. 81995 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:93,587,980
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 1188344 as yet unmatched pairs. 73893 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:103,009,848
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 1186070 as yet unmatched pairs. 71612 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:119,515,010
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 1183713 as yet unmatched pairs. 69236 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:132,934,365
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 1180335 as yet unmatched pairs. 65845 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:138,386,551
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 1177343 as yet unmatched pairs. 62853 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:139,681,078
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 1174344 as yet unmatched pairs. 59842 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 2s. Last read position: chr5:141,137,268
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 1171789 as yet unmatched pairs. 57268 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:141,863,987
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 1169860 as yet unmatched pairs. 55331 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:147,878,831
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 1180392 as yet unmatched pairs. 65858 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:150,051,930
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 1164248 as yet unmatched pairs. 49710 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,049
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 1185034 as yet unmatched pairs. 70480 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,217
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 1277796 as yet unmatched pairs. 163242 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr5:150,403,154
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 1206570 as yet unmatched pairs. 92015 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,089
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 1202665 as yet unmatched pairs. 88110 records in RAM.
INFO 2026-06-08 08:45:32 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr5:150,406,259
INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 1229385 as yet unmatched pairs. 114830 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,948
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 1190900 as yet unmatched pairs. 76336 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr5:150,446,804
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 1148149 as yet unmatched pairs. 33583 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr5:151,030,558
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 1142388 as yet unmatched pairs. 27822 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr5:154,907,611
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 1139520 as yet unmatched pairs. 24951 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr5:169,759,713
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 1137296 as yet unmatched pairs. 22727 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:172,006,473
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 1135185 as yet unmatched pairs. 20592 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:176,881,471
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 1131952 as yet unmatched pairs. 17355 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr5:178,224,614
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 1129385 as yet unmatched pairs. 14782 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 2s. Last read position: chr5:179,821,023
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 1133611 as yet unmatched pairs. 18990 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr5:180,242,658
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 1123719 as yet unmatched pairs. 9084 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:180,590,636
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 1141094 as yet unmatched pairs. 26456 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr5:181,050,204
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 1116287 as yet unmatched pairs. 1649 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr6:4,117,313
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 1113451 as yet unmatched pairs. 86235 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:8,041,243
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 1110517 as yet unmatched pairs. 83298 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:17,760,849
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 1108187 as yet unmatched pairs. 80957 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:26,406,049
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 1105499 as yet unmatched pairs. 78264 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:29,944,529
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 1107898 as yet unmatched pairs. 80663 records in RAM.
INFO 2026-06-08 08:46:03 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:30,888,711
INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 1100699 as yet unmatched pairs. 73463 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:31,355,406
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 1102502 as yet unmatched pairs. 75261 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:31,645,125
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 1095314 as yet unmatched pairs. 68064 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:31,933,739
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 1093640 as yet unmatched pairs. 66390 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:32,032,044
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 1092688 as yet unmatched pairs. 65438 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:32,073,913
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 1089566 as yet unmatched pairs. 62316 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:32,191,799
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 1085337 as yet unmatched pairs. 58087 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:32,581,631
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 1091762 as yet unmatched pairs. 64506 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:33,069,702
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 1084267 as yet unmatched pairs. 57010 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:33,316,257
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 1077613 as yet unmatched pairs. 50355 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr6:33,692,873
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 1074539 as yet unmatched pairs. 47279 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:36,028,201
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 1072130 as yet unmatched pairs. 44860 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:41,690,787
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 1069144 as yet unmatched pairs. 41861 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr6:43,130,569
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 1066679 as yet unmatched pairs. 39395 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:44,253,302
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 1064843 as yet unmatched pairs. 37553 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr6:52,995,629
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 1060963 as yet unmatched pairs. 33660 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr6:62,568,636
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 1058294 as yet unmatched pairs. 30983 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr6:83,119,747
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 1056118 as yet unmatched pairs. 28805 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:104,771,956
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 1053277 as yet unmatched pairs. 25956 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:112,114,687
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 1051012 as yet unmatched pairs. 23685 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr6:117,387,905
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 1052039 as yet unmatched pairs. 24711 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr6:128,322,230
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 1045887 as yet unmatched pairs. 18548 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr6:136,261,072
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 1043207 as yet unmatched pairs. 15855 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:143,537,044
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 1040468 as yet unmatched pairs. 13106 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr6:149,771,226
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 1038073 as yet unmatched pairs. 10711 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr6:154,212,804
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 1035565 as yet unmatched pairs. 8203 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr6:158,783,518
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 1037599 as yet unmatched pairs. 10232 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr6:163,561,988
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 1031201 as yet unmatched pairs. 3834 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 2s. Last read position: chr7:193,687
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 1027485 as yet unmatched pairs. 73821 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:4,178,545
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 1023838 as yet unmatched pairs. 70174 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,732
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 1028323 as yet unmatched pairs. 74651 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,535
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 1024238 as yet unmatched pairs. 70565 records in RAM.
INFO 2026-06-08 08:46:58 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:16,777,797
INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 1016182 as yet unmatched pairs. 62490 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr7:27,832,956
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 1013405 as yet unmatched pairs. 59706 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 60s. Last read position: chr7:37,259,339
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 1010575 as yet unmatched pairs. 56871 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr7:44,109,299
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 1010075 as yet unmatched pairs. 56371 records in RAM.
INFO 2026-06-08 08:48:05 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr7:45,102,374
INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 1005273 as yet unmatched pairs. 51569 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr7:55,181,416
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 1003525 as yet unmatched pairs. 49817 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr7:72,925,135
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 1000005 as yet unmatched pairs. 46295 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr7:74,045,228
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 1003630 as yet unmatched pairs. 49913 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr7:74,885,023
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 994635 as yet unmatched pairs. 40918 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr7:76,303,981
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 994599 as yet unmatched pairs. 40855 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr7:91,265,195
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 990271 as yet unmatched pairs. 36514 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr7:94,409,771
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 989389 as yet unmatched pairs. 35631 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr7:98,190,775
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 984674 as yet unmatched pairs. 30915 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr7:100,072,183
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 982099 as yet unmatched pairs. 28339 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr7:100,818,537
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 979321 as yet unmatched pairs. 25556 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:102,544,743
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 977183 as yet unmatched pairs. 23417 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr7:106,905,209
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 974804 as yet unmatched pairs. 21025 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr7:116,525,582
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 972465 as yet unmatched pairs. 18681 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr7:127,703,309
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 972399 as yet unmatched pairs. 18615 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 2s. Last read position: chr7:131,504,327
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 967631 as yet unmatched pairs. 13834 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr7:138,579,379
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 965341 as yet unmatched pairs. 11541 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr7:141,682,463
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 962267 as yet unmatched pairs. 8464 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr7:149,021,125
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 960299 as yet unmatched pairs. 6493 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr7:151,081,759
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 957403 as yet unmatched pairs. 3596 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr7:158,748,266
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 954559 as yet unmatched pairs. 751 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 2s. Last read position: chr8:12,729,030
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 951774 as yet unmatched pairs. 61664 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:19,955,886
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 949188 as yet unmatched pairs. 59069 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:22,162,680
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 1006714 as yet unmatched pairs. 116589 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:22,163,461
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 986013 as yet unmatched pairs. 95888 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:22,164,277
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 981225 as yet unmatched pairs. 91096 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:22,624,294
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 937462 as yet unmatched pairs. 47331 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:26,643,443
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 936251 as yet unmatched pairs. 46117 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:30,504,374
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 934358 as yet unmatched pairs. 44220 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 2s. Last read position: chr8:38,413,473
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 929443 as yet unmatched pairs. 39304 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:38,827,245
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 933662 as yet unmatched pairs. 43523 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:42,906,227
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 924726 as yet unmatched pairs. 34579 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 2s. Last read position: chr8:54,459,326
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 920577 as yet unmatched pairs. 30430 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:68,027,252
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 918154 as yet unmatched pairs. 28005 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:86,402,136
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 915858 as yet unmatched pairs. 25709 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:99,274,207
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 913393 as yet unmatched pairs. 23233 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr8:102,858,036
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 910982 as yet unmatched pairs. 20817 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr8:120,231,464
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 908584 as yet unmatched pairs. 18403 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr8:133,248,515
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 906119 as yet unmatched pairs. 15937 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr8:143,580,110
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 904286 as yet unmatched pairs. 14097 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,177
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 900937 as yet unmatched pairs. 10743 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,801
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 899754 as yet unmatched pairs. 9560 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,313
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 899685 as yet unmatched pairs. 9491 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr8:144,086,005
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 894527 as yet unmatched pairs. 4329 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr8:144,792,004
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 890628 as yet unmatched pairs. 429 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 2s. Last read position: chr9:6,984,234
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 888101 as yet unmatched pairs. 58315 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:19,378,850
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 891273 as yet unmatched pairs. 61482 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 2s. Last read position: chr9:33,468,326
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 883087 as yet unmatched pairs. 53293 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:35,547,655
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 880446 as yet unmatched pairs. 50649 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr9:36,369,834
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 877707 as yet unmatched pairs. 47908 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:71,750,023
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 875463 as yet unmatched pairs. 45636 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:86,057,754
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 872610 as yet unmatched pairs. 42766 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:93,471,333
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 870651 as yet unmatched pairs. 40805 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:99,055,269
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 867163 as yet unmatched pairs. 37306 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:110,138,018
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 865150 as yet unmatched pairs. 35278 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:113,536,381
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 861877 as yet unmatched pairs. 31996 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr9:120,788,075
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 859365 as yet unmatched pairs. 29474 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr9:122,877,525
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 856560 as yet unmatched pairs. 26663 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr9:127,507,086
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 855388 as yet unmatched pairs. 25476 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr9:128,190,715
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 851016 as yet unmatched pairs. 21103 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:129,009,080
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 848687 as yet unmatched pairs. 18769 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr9:131,260,776
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 845331 as yet unmatched pairs. 15412 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr9:133,257,398
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 842572 as yet unmatched pairs. 12649 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr9:134,796,847
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 840447 as yet unmatched pairs. 10521 records in RAM.
INFO 2026-06-08 08:49:51 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr9:136,497,336
INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 837299 as yet unmatched pairs. 7370 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr9:136,980,238
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 837272 as yet unmatched pairs. 7343 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr9:137,612,976
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 830870 as yet unmatched pairs. 941 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr10:6,114,013
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 827850 as yet unmatched pairs. 49194 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr10:17,229,867
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 826248 as yet unmatched pairs. 47585 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 2s. Last read position: chr10:27,509,889
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 822783 as yet unmatched pairs. 44109 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:32,293,019
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 820906 as yet unmatched pairs. 42231 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:44,977,451
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 822356 as yet unmatched pairs. 43668 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:47,300,767
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 815700 as yet unmatched pairs. 37011 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr10:59,906,215
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 815204 as yet unmatched pairs. 36502 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:69,504,437
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 810804 as yet unmatched pairs. 32102 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:73,500,692
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 808573 as yet unmatched pairs. 29869 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:77,637,264
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 805303 as yet unmatched pairs. 26584 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr10:79,559,379
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 808496 as yet unmatched pairs. 29776 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr10:79,614,055
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 807429 as yet unmatched pairs. 28709 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr10:87,230,989
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 798519 as yet unmatched pairs. 19794 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr10:93,325,842
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 796260 as yet unmatched pairs. 17531 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr10:97,462,626
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 793818 as yet unmatched pairs. 15081 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr10:102,065,941
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 790750 as yet unmatched pairs. 12012 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr10:104,037,708
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 787933 as yet unmatched pairs. 9191 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr10:117,284,267
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 785724 as yet unmatched pairs. 6969 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr10:122,210,714
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 783931 as yet unmatched pairs. 5171 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 2s. Last read position: chr10:127,176,144
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 781276 as yet unmatched pairs. 2515 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 3s. Last read position: chr11:308,364
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 779363 as yet unmatched pairs. 92517 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:722,090
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 774823 as yet unmatched pairs. 87976 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:1,753,629
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 775858 as yet unmatched pairs. 89008 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:2,903,383
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 768751 as yet unmatched pairs. 81892 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:6,616,063
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 766720 as yet unmatched pairs. 79855 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:10,627,758
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 763111 as yet unmatched pairs. 76246 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:16,738,736
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 761005 as yet unmatched pairs. 74138 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:33,107,927
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 757903 as yet unmatched pairs. 71036 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:43,943,162
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 755478 as yet unmatched pairs. 68600 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:47,216,943
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 752461 as yet unmatched pairs. 65574 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:57,416,637
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 749764 as yet unmatched pairs. 62877 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:60,172,880
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 747486 as yet unmatched pairs. 60597 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:62,419,063
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 746340 as yet unmatched pairs. 59451 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:62,523,325
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 744511 as yet unmatched pairs. 57622 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:62,530,634
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 741146 as yet unmatched pairs. 54257 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:62,633,247
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 738324 as yet unmatched pairs. 51434 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:64,237,421
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 735913 as yet unmatched pairs. 49023 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 2s. Last read position: chr11:65,110,763
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 731889 as yet unmatched pairs. 44998 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr11:65,572,591
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 728323 as yet unmatched pairs. 41422 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:65,976,523
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 725304 as yet unmatched pairs. 38402 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:67,254,919
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 722732 as yet unmatched pairs. 35828 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:68,167,080
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 718925 as yet unmatched pairs. 32021 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:71,109,941
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 716673 as yet unmatched pairs. 29765 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:72,695,602
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 714133 as yet unmatched pairs. 27224 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:75,276,691
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 711207 as yet unmatched pairs. 24294 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr11:85,958,902
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 708945 as yet unmatched pairs. 22021 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:96,365,034
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 706012 as yet unmatched pairs. 19084 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:108,177,031
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 703425 as yet unmatched pairs. 16496 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:114,064,537
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 703721 as yet unmatched pairs. 16789 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:115,238,640
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 698437 as yet unmatched pairs. 11499 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:118,584,529
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 695594 as yet unmatched pairs. 8655 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:120,431,888
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 693406 as yet unmatched pairs. 6467 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:125,620,061
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 690472 as yet unmatched pairs. 3532 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:130,419,110
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 687949 as yet unmatched pairs. 1009 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 2s. Last read position: chr12:896,092
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 686096 as yet unmatched pairs. 84419 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 2s. Last read position: chr12:6,018,755
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 684849 as yet unmatched pairs. 83166 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 2s. Last read position: chr12:6,386,144
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 680435 as yet unmatched pairs. 78752 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:6,938,794
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 677622 as yet unmatched pairs. 75939 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:7,499,117
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 674825 as yet unmatched pairs. 73139 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:9,077,804
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 680411 as yet unmatched pairs. 78721 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:9,109,924
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 673731 as yet unmatched pairs. 72040 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:12,487,105
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 667547 as yet unmatched pairs. 65848 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:20,621,407
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 664559 as yet unmatched pairs. 62860 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:32,619,700
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 662271 as yet unmatched pairs. 60572 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:46,196,196
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 659688 as yet unmatched pairs. 57987 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:49,034,419
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 657862 as yet unmatched pairs. 56160 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:49,753,030
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 655719 as yet unmatched pairs. 54017 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,536
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 652924 as yet unmatched pairs. 51222 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:53,060,899
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 651207 as yet unmatched pairs. 49504 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:53,711,964
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 647560 as yet unmatched pairs. 45856 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:55,757,548
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 644395 as yet unmatched pairs. 42688 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:56,326,654
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 641642 as yet unmatched pairs. 39935 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,635
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 641631 as yet unmatched pairs. 39924 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:57,177,170
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 638585 as yet unmatched pairs. 36877 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:57,498,588
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 634120 as yet unmatched pairs. 32408 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:64,694,763
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 631624 as yet unmatched pairs. 29910 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:70,555,889
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 629729 as yet unmatched pairs. 28013 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:89,350,862
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 627693 as yet unmatched pairs. 25973 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:95,670,096
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 624610 as yet unmatched pairs. 22889 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:104,030,760
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 621558 as yet unmatched pairs. 19837 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:109,568,680
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 619111 as yet unmatched pairs. 17384 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:112,193,061
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 616402 as yet unmatched pairs. 14673 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:116,237,625
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 613905 as yet unmatched pairs. 12176 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:120,565,491
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 611201 as yet unmatched pairs. 9470 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:122,982,639
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 609282 as yet unmatched pairs. 7543 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:124,863,578
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 605435 as yet unmatched pairs. 3696 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:132,736,924
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 602518 as yet unmatched pairs. 779 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr13:25,097,193
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 600022 as yet unmatched pairs. 24729 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr13:37,033,566
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 597720 as yet unmatched pairs. 22421 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr13:45,006,246
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 594759 as yet unmatched pairs. 19458 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr13:51,773,960
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 592382 as yet unmatched pairs. 17081 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr13:77,169,624
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 589953 as yet unmatched pairs. 14652 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 2s. Last read position: chr13:98,853,492
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 587848 as yet unmatched pairs. 12547 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr13:109,756,273
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 584770 as yet unmatched pairs. 9469 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr13:110,428,467
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 582659 as yet unmatched pairs. 7355 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr13:112,831,401
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 579123 as yet unmatched pairs. 3817 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 2s. Last read position: chr14:20,369,458
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 575293 as yet unmatched pairs. 53517 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:21,429,188
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 572853 as yet unmatched pairs. 51072 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:23,565,827
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 570349 as yet unmatched pairs. 48567 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr14:24,855,983
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 567596 as yet unmatched pairs. 45814 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr14:36,314,825
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 565543 as yet unmatched pairs. 43761 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,696
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 562143 as yet unmatched pairs. 40353 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr14:58,365,527
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 559505 as yet unmatched pairs. 37715 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:65,076,368
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 557343 as yet unmatched pairs. 35553 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr14:71,057,714
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 554674 as yet unmatched pairs. 32880 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:74,486,356
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 557093 as yet unmatched pairs. 35296 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:74,528,547
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 550882 as yet unmatched pairs. 29079 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:75,048,392
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 546485 as yet unmatched pairs. 24682 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 2s. Last read position: chr14:81,486,342
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 543869 as yet unmatched pairs. 22065 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr14:92,716,167
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 541425 as yet unmatched pairs. 19618 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr14:95,113,171
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 538960 as yet unmatched pairs. 17138 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr14:102,017,481
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 536539 as yet unmatched pairs. 14717 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr14:103,662,777
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 533255 as yet unmatched pairs. 11430 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr14:105,173,143
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 530641 as yet unmatched pairs. 8816 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,252
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 544733 as yet unmatched pairs. 22905 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,775
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 528913 as yet unmatched pairs. 7085 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,583
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 533953 as yet unmatched pairs. 12125 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr15:22,872,884
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 522053 as yet unmatched pairs. 53540 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:30,361,241
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 519171 as yet unmatched pairs. 50644 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr15:39,587,473
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 517479 as yet unmatched pairs. 48952 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr15:41,438,416
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 514030 as yet unmatched pairs. 45502 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:42,442,107
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 512170 as yet unmatched pairs. 43641 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,059
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 515010 as yet unmatched pairs. 46481 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:45,144,923
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 508948 as yet unmatched pairs. 40417 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:49,016,598
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 505143 as yet unmatched pairs. 36612 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:56,096,163
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 501430 as yet unmatched pairs. 32888 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:61,856,398
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 499489 as yet unmatched pairs. 30947 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:64,156,779
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 498208 as yet unmatched pairs. 29666 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:66,703,863
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 494334 as yet unmatched pairs. 25785 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr15:72,242,157
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 491634 as yet unmatched pairs. 23083 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:74,173,964
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 488384 as yet unmatched pairs. 19824 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr15:75,650,141
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 485712 as yet unmatched pairs. 17150 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr15:78,922,010
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 492253 as yet unmatched pairs. 23691 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr15:81,038,480
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 480250 as yet unmatched pairs. 11686 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr15:84,982,277
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 478673 as yet unmatched pairs. 10109 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr15:85,719,156
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 477456 as yet unmatched pairs. 8892 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr15:90,227,633
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 473332 as yet unmatched pairs. 4766 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr15:92,980,909
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 470449 as yet unmatched pairs. 1883 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr16:376,285
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 468083 as yet unmatched pairs. 82182 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr16:954,570
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 465291 as yet unmatched pairs. 79390 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:1,534,524
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 465203 as yet unmatched pairs. 79299 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr16:2,087,883
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 459933 as yet unmatched pairs. 74022 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:2,285,628
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 457475 as yet unmatched pairs. 71564 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:2,762,878
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 454021 as yet unmatched pairs. 68110 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:3,026,268
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 450593 as yet unmatched pairs. 64681 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:4,455,576
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 447815 as yet unmatched pairs. 61902 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:9,092,224
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 445434 as yet unmatched pairs. 59519 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:14,246,883
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 442862 as yet unmatched pairs. 56947 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:14,989,657
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 441327 as yet unmatched pairs. 55405 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:16,263,195
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 438434 as yet unmatched pairs. 52512 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 2s. Last read position: chr16:16,393,782
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 437697 as yet unmatched pairs. 51775 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr16:18,431,880
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 436600 as yet unmatched pairs. 50678 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:21,402,650
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 434283 as yet unmatched pairs. 48361 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:21,962,784
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 433839 as yet unmatched pairs. 47917 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:23,702,197
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 431738 as yet unmatched pairs. 45816 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:28,605,886
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 429950 as yet unmatched pairs. 44027 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:29,449,557
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 428091 as yet unmatched pairs. 42164 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:29,862,700
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 425679 as yet unmatched pairs. 39752 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:30,278,210
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 422609 as yet unmatched pairs. 36681 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr16:30,767,904
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 419961 as yet unmatched pairs. 34033 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr16:31,362,628
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 417432 as yet unmatched pairs. 31504 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:52,450,523
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 414806 as yet unmatched pairs. 28878 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr16:56,466,072
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 411990 as yet unmatched pairs. 26061 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:57,764,155
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 409546 as yet unmatched pairs. 23616 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:66,942,075
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 406370 as yet unmatched pairs. 20439 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr16:67,878,195
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 403384 as yet unmatched pairs. 17452 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 2s. Last read position: chr16:69,647,447
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 400522 as yet unmatched pairs. 14589 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:71,448,537
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 397760 as yet unmatched pairs. 11823 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 2s. Last read position: chr16:75,242,755
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 395778 as yet unmatched pairs. 9841 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 2s. Last read position: chr16:85,077,523
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 392425 as yet unmatched pairs. 6488 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr16:88,734,891
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 390206 as yet unmatched pairs. 4269 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr16:89,896,044
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 387105 as yet unmatched pairs. 1168 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 2s. Last read position: chr17:1,509,139
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 383567 as yet unmatched pairs. 108190 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr17:2,372,990
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 380774 as yet unmatched pairs. 105397 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr17:4,742,040
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 377708 as yet unmatched pairs. 102331 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:6,996,203
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 375153 as yet unmatched pairs. 99776 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:7,484,802
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 372649 as yet unmatched pairs. 97272 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 59s. Last read position: chr17:7,853,355
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 370122 as yet unmatched pairs. 94745 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 73s. Last read position: chr17:8,144,796
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 370356 as yet unmatched pairs. 94977 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr17:9,926,698
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 364567 as yet unmatched pairs. 89188 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:17,143,647
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 362846 as yet unmatched pairs. 87467 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:18,650,244
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 358700 as yet unmatched pairs. 83321 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:28,325,550
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 356683 as yet unmatched pairs. 81302 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr17:29,498,360
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 354111 as yet unmatched pairs. 78729 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 2s. Last read position: chr17:32,446,892
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 351360 as yet unmatched pairs. 75970 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:36,501,081
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 348857 as yet unmatched pairs. 73467 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,100
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 349731 as yet unmatched pairs. 74340 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,443
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 345046 as yet unmatched pairs. 69655 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:40,443,796
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 342946 as yet unmatched pairs. 67555 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 3s. Last read position: chr17:42,322,442
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 338348 as yet unmatched pairs. 62957 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr17:42,950,607
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 335687 as yet unmatched pairs. 60296 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr17:44,352,173
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 334816 as yet unmatched pairs. 59425 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr17:46,331,476
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 330503 as yet unmatched pairs. 55112 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr17:48,576,978
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 327913 as yet unmatched pairs. 52522 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,041
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 334839 as yet unmatched pairs. 59448 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,010
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 334373 as yet unmatched pairs. 58982 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,365
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 331545 as yet unmatched pairs. 56154 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,199
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 331641 as yet unmatched pairs. 56248 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,699,655
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 313733 as yet unmatched pairs. 38340 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr17:58,520,461
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 311148 as yet unmatched pairs. 35754 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:60,157,731
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 308653 as yet unmatched pairs. 33259 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr17:63,484,432
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 305863 as yet unmatched pairs. 30460 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr17:64,506,074
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 303627 as yet unmatched pairs. 28224 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:68,515,538
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 303975 as yet unmatched pairs. 28572 records in RAM.
INFO 2026-06-08 08:57:57 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:74,443,909
INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 298298 as yet unmatched pairs. 22895 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 2s. Last read position: chr17:75,622,043
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 295410 as yet unmatched pairs. 20007 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 2s. Last read position: chr17:76,531,107
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 292513 as yet unmatched pairs. 17109 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:78,855,643
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 290829 as yet unmatched pairs. 15408 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr17:80,339,710
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 287519 as yet unmatched pairs. 12098 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 2s. Last read position: chr17:81,511,073
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 285984 as yet unmatched pairs. 10563 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 2s. Last read position: chr17:82,009,083
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 281609 as yet unmatched pairs. 6188 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:82,091,340
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 278885 as yet unmatched pairs. 3463 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr18:2,762,172
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 274925 as yet unmatched pairs. 14584 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr18:11,851,812
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 272593 as yet unmatched pairs. 12252 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr18:25,226,465
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 269606 as yet unmatched pairs. 9264 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr18:46,088,194
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 267879 as yet unmatched pairs. 7536 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr18:58,323,253
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 264871 as yet unmatched pairs. 4518 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr18:75,208,927
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 262006 as yet unmatched pairs. 1644 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 2s. Last read position: chr19:808,728
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 259444 as yet unmatched pairs. 113615 records in RAM.
INFO 2026-06-08 08:58:26 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:1,207,069
INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 255551 as yet unmatched pairs. 109722 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:1,881,471
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 253333 as yet unmatched pairs. 107504 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 2s. Last read position: chr19:3,011,032
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 249462 as yet unmatched pairs. 103633 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:4,262,083
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 245957 as yet unmatched pairs. 100128 records in RAM.
INFO 2026-06-08 08:58:33 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:5,691,424
INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 243534 as yet unmatched pairs. 97705 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:6,696,451
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 242964 as yet unmatched pairs. 97135 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr19:7,535,817
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 237495 as yet unmatched pairs. 91666 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr19:8,554,708
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 234276 as yet unmatched pairs. 88447 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:10,514,845
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 231160 as yet unmatched pairs. 85331 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 3s. Last read position: chr19:11,193,631
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 229887 as yet unmatched pairs. 84057 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr19:12,663,815
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 227067 as yet unmatched pairs. 81236 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:13,207,276
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 222785 as yet unmatched pairs. 76951 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,791
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 222264 as yet unmatched pairs. 76430 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:15,264,562
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 217830 as yet unmatched pairs. 71996 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:17,000,428
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 214262 as yet unmatched pairs. 68427 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:18,010,205
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 212157 as yet unmatched pairs. 66322 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:18,768,574
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 208396 as yet unmatched pairs. 62561 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:23,827,953
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 205181 as yet unmatched pairs. 59343 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 2s. Last read position: chr19:35,126,529
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 202230 as yet unmatched pairs. 56392 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:36,143,103
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 200253 as yet unmatched pairs. 54415 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:38,734,195
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 195717 as yet unmatched pairs. 49879 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,386
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 196577 as yet unmatched pairs. 50739 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:40,393,954
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 190782 as yet unmatched pairs. 44944 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 3s. Last read position: chr19:40,710,100
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 187654 as yet unmatched pairs. 41816 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:41,422,234
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 184545 as yet unmatched pairs. 38707 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:42,271,986
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 182951 as yet unmatched pairs. 37112 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:43,552,847
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 179206 as yet unmatched pairs. 33367 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:45,395,841
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 176017 as yet unmatched pairs. 30178 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:46,608,892
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 173245 as yet unmatched pairs. 27401 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr19:47,754,585
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 173135 as yet unmatched pairs. 27291 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:48,919,252
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 167423 as yet unmatched pairs. 21579 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 2s. Last read position: chr19:49,513,461
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 165398 as yet unmatched pairs. 19554 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:49,884,731
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 161625 as yet unmatched pairs. 15781 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:50,361,675
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 166449 as yet unmatched pairs. 20604 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr19:53,165,661
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 155739 as yet unmatched pairs. 9894 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:54,465,417
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 153345 as yet unmatched pairs. 7497 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:55,649,473
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 150176 as yet unmatched pairs. 4328 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:58,090,108
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 148375 as yet unmatched pairs. 2527 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:1,922,415
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 145315 as yet unmatched pairs. 34427 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr20:5,184,883
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 142367 as yet unmatched pairs. 31478 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr20:18,414,368
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 139362 as yet unmatched pairs. 28472 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr20:25,309,498
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 136777 as yet unmatched pairs. 25887 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:34,615,979
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 133946 as yet unmatched pairs. 23053 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 2s. Last read position: chr20:36,500,547
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 131638 as yet unmatched pairs. 20742 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 3s. Last read position: chr20:41,114,012
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 128863 as yet unmatched pairs. 17967 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr20:45,327,352
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 132014 as yet unmatched pairs. 21118 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr20:47,633,615
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 123629 as yet unmatched pairs. 12724 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr20:51,694,039
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 120873 as yet unmatched pairs. 9966 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr20:59,944,619
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 117390 as yet unmatched pairs. 6482 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr20:62,909,808
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 114398 as yet unmatched pairs. 3489 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr20:64,260,037
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 111280 as yet unmatched pairs. 371 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,783
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 109742 as yet unmatched pairs. 16471 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 2s. Last read position: chr21:25,975,112
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 108601 as yet unmatched pairs. 15329 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 2s. Last read position: chr21:33,551,637
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 105189 as yet unmatched pairs. 11917 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr21:38,806,036
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 103089 as yet unmatched pairs. 9817 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr21:43,421,743
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 100007 as yet unmatched pairs. 6735 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr21:45,493,524
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 98138 as yet unmatched pairs. 4866 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr21:46,351,465
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 94090 as yet unmatched pairs. 818 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 2s. Last read position: chr22:19,135,123
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 91012 as yet unmatched pairs. 47124 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 2s. Last read position: chr22:20,734,468
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 87816 as yet unmatched pairs. 43928 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr22:23,261,521
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 86681 as yet unmatched pairs. 42793 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr22:24,185,738
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 82775 as yet unmatched pairs. 38887 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr22:27,998,664
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 79614 as yet unmatched pairs. 35726 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr22:29,339,063
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 76980 as yet unmatched pairs. 33092 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr22:31,443,018
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 74013 as yet unmatched pairs. 30125 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr22:36,285,865
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 73157 as yet unmatched pairs. 29269 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr22:37,029,230
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 68822 as yet unmatched pairs. 24934 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr22:38,300,934
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 65812 as yet unmatched pairs. 21924 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr22:39,521,458
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 63301 as yet unmatched pairs. 19413 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr22:41,339,833
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 60892 as yet unmatched pairs. 17004 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 2s. Last read position: chr22:42,213,609
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 57419 as yet unmatched pairs. 13531 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr22:45,737,028
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 54599 as yet unmatched pairs. 10711 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 2s. Last read position: chr22:49,961,509
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 51843 as yet unmatched pairs. 7955 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 2s. Last read position: chr22:50,422,350
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 48378 as yet unmatched pairs. 4489 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr22:50,721,194
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 45704 as yet unmatched pairs. 1815 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chrX:9,932,416
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 41693 as yet unmatched pairs. 38366 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chrX:20,130,555
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 39484 as yet unmatched pairs. 36155 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chrX:40,591,323
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 37744 as yet unmatched pairs. 34415 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chrX:47,145,303
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 34018 as yet unmatched pairs. 30689 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chrX:48,911,576
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 31278 as yet unmatched pairs. 27949 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chrX:53,211,548
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 28936 as yet unmatched pairs. 25607 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 2s. Last read position: chrX:57,593,011
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 25893 as yet unmatched pairs. 22564 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chrX:71,290,701
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 23658 as yet unmatched pairs. 20329 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chrX:77,633,657
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 21365 as yet unmatched pairs. 18036 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chrX:103,216,407
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 18739 as yet unmatched pairs. 15410 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 2s. Last read position: chrX:118,444,439
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 16006 as yet unmatched pairs. 12677 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chrX:130,056,010
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 13781 as yet unmatched pairs. 10452 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chrX:153,273,288
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 11135 as yet unmatched pairs. 7806 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chrX:154,349,434
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 9669 as yet unmatched pairs. 6340 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chrX:154,367,964
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 8024 as yet unmatched pairs. 4695 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: GL000008.2:133,324
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 3220 as yet unmatched pairs. 1 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,268
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 1370 as yet unmatched pairs. 1007 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 624711485 records. 0 pairs never matched.
INFO 2026-06-08 09:02:07 MarkDuplicates After buildSortedReadEndLists freeMemory: 204139808; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:02:07 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:02:15 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:02:15 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:02:29 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:02:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,193
INFO 2026-06-08 09:02:29 OpticalDuplicateFinder Large duplicate set. size = 1602
INFO 2026-06-08 09:02:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,017
INFO 2026-06-08 09:02:29 OpticalDuplicateFinder Large duplicate set. size = 1206
INFO 2026-06-08 09:02:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,178
INFO 2026-06-08 09:02:29 OpticalDuplicateFinder Large duplicate set. size = 1227
INFO 2026-06-08 09:02:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,486
INFO 2026-06-08 09:02:30 OpticalDuplicateFinder Large duplicate set. size = 1125
INFO 2026-06-08 09:02:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,848
INFO 2026-06-08 09:02:30 OpticalDuplicateFinder Large duplicate set. size = 1335
INFO 2026-06-08 09:02:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,512
INFO 2026-06-08 09:02:30 OpticalDuplicateFinder Large duplicate set. size = 1374
INFO 2026-06-08 09:02:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,815
INFO 2026-06-08 09:02:30 OpticalDuplicateFinder Large duplicate set. size = 1015
INFO 2026-06-08 09:02:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,258
INFO 2026-06-08 09:02:30 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 09:02:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,758
INFO 2026-06-08 09:02:30 OpticalDuplicateFinder Large duplicate set. size = 1130
INFO 2026-06-08 09:02:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,289
INFO 2026-06-08 09:02:44 OpticalDuplicateFinder Large duplicate set. size = 1392
INFO 2026-06-08 09:02:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,208
INFO 2026-06-08 09:02:44 OpticalDuplicateFinder Large duplicate set. size = 1269
INFO 2026-06-08 09:02:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,855
INFO 2026-06-08 09:02:44 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:02:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,196
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1160
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,636
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1173
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,923
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1261
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,066
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1826
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,985
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1317
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,916
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1112
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,415
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1414
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,708
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 4568
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,865
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,842
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,826
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,365
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1490
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,002
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 2494
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,591
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,576
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1172
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,218
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 2225
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,216
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,523
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1891
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,695
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1142
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,256
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,194
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1809
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,328
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,938
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1232
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,480
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,390
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,610
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1352
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,320
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1458
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,066
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1167
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,894
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1481
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,754
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1083
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,484
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,658
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1154
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,900
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1222
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,982
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1981
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,755
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1466
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,250
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1444
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,671
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder Large duplicate set. size = 1035
INFO 2026-06-08 09:02:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,232
INFO 2026-06-08 09:02:47 OpticalDuplicateFinder Large duplicate set. size = 1313
INFO 2026-06-08 09:02:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,538
INFO 2026-06-08 09:02:47 OpticalDuplicateFinder Large duplicate set. size = 1514
INFO 2026-06-08 09:02:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,371
INFO 2026-06-08 09:02:47 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 09:02:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,444
INFO 2026-06-08 09:02:47 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 09:02:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,065
INFO 2026-06-08 09:02:47 OpticalDuplicateFinder Large duplicate set. size = 1629
INFO 2026-06-08 09:02:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,760
INFO 2026-06-08 09:02:47 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 09:02:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,670
INFO 2026-06-08 09:02:47 OpticalDuplicateFinder Large duplicate set. size = 1421
INFO 2026-06-08 09:02:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,658
INFO 2026-06-08 09:02:56 OpticalDuplicateFinder Large duplicate set. size = 1303
INFO 2026-06-08 09:02:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,850
INFO 2026-06-08 09:02:56 OpticalDuplicateFinder Large duplicate set. size = 1353
INFO 2026-06-08 09:02:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,545
INFO 2026-06-08 09:02:56 OpticalDuplicateFinder Large duplicate set. size = 1080
INFO 2026-06-08 09:02:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,363
INFO 2026-06-08 09:02:56 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-08 09:02:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,662
INFO 2026-06-08 09:02:56 OpticalDuplicateFinder Large duplicate set. size = 1152
INFO 2026-06-08 09:02:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,749
INFO 2026-06-08 09:03:03 OpticalDuplicateFinder Large duplicate set. size = 1080
INFO 2026-06-08 09:03:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,141
INFO 2026-06-08 09:04:08 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:04:08 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:05:13 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:05:22 MarkDuplicates After generateDuplicateIndexes freeMemory: 203927056; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:05:22 MarkDuplicates Marking 439710564 records as duplicates.
INFO 2026-06-08 09:05:22 MarkDuplicates Found 13811768 optical duplicate clusters.
INFO 2026-06-08 09:05:22 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:05:40 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:18s. Time for last 10,000,000: 18s. Last read position: chr1:22,644,128
INFO 2026-06-08 09:05:57 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:35s. Time for last 10,000,000: 17s. Last read position: chr1:44,776,126
INFO 2026-06-08 09:06:14 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:52s. Time for last 10,000,000: 16s. Last read position: chr1:117,402,386
INFO 2026-06-08 09:06:31 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:08s. Time for last 10,000,000: 16s. Last read position: chr1:154,272,697
INFO 2026-06-08 09:06:47 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:25s. Time for last 10,000,000: 16s. Last read position: chr1:180,194,383
INFO 2026-06-08 09:07:04 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:42s. Time for last 10,000,000: 16s. Last read position: chr1:226,065,750
INFO 2026-06-08 09:07:21 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:59s. Time for last 10,000,000: 16s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:07:38 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:15s. Time for last 10,000,000: 16s. Last read position: chr2:73,080,752
INFO 2026-06-08 09:07:54 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:32s. Time for last 10,000,000: 16s. Last read position: chr2:108,773,002
INFO 2026-06-08 09:08:11 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:49s. Time for last 10,000,000: 16s. Last read position: chr2:197,706,859
INFO 2026-06-08 09:08:28 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:05s. Time for last 10,000,000: 16s. Last read position: chr2:215,419,325
INFO 2026-06-08 09:08:45 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:22s. Time for last 10,000,000: 16s. Last read position: chr3:9,820,638
INFO 2026-06-08 09:09:01 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:39s. Time for last 10,000,000: 16s. Last read position: chr3:50,565,623
INFO 2026-06-08 09:09:18 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:56s. Time for last 10,000,000: 16s. Last read position: chr3:133,587,918
INFO 2026-06-08 09:09:35 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:13s. Time for last 10,000,000: 16s. Last read position: chr4:7,855,536
INFO 2026-06-08 09:09:52 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:30s. Time for last 10,000,000: 17s. Last read position: chr4:85,995,451
INFO 2026-06-08 09:10:09 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:47s. Time for last 10,000,000: 16s. Last read position: chr5:13,830,108
INFO 2026-06-08 09:10:26 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:03s. Time for last 10,000,000: 16s. Last read position: chr5:103,009,848
INFO 2026-06-08 09:10:45 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:23s. Time for last 10,000,000: 19s. Last read position: chr5:150,402,217
INFO 2026-06-08 09:11:04 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:42s. Time for last 10,000,000: 19s. Last read position: chr5:176,881,471
INFO 2026-06-08 09:11:21 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:59s. Time for last 10,000,000: 17s. Last read position: chr6:29,944,529
INFO 2026-06-08 09:11:38 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:16s. Time for last 10,000,000: 16s. Last read position: chr6:33,316,257
INFO 2026-06-08 09:11:55 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:32s. Time for last 10,000,000: 16s. Last read position: chr6:112,114,687
INFO 2026-06-08 09:12:12 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:49s. Time for last 10,000,000: 16s. Last read position: chr7:4,178,545
INFO 2026-06-08 09:12:28 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:06s. Time for last 10,000,000: 16s. Last read position: chr7:74,045,228
INFO 2026-06-08 09:12:45 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:23s. Time for last 10,000,000: 17s. Last read position: chr7:116,525,582
INFO 2026-06-08 09:13:02 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:39s. Time for last 10,000,000: 16s. Last read position: chr8:22,162,680
INFO 2026-06-08 09:13:19 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:56s. Time for last 10,000,000: 16s. Last read position: chr8:68,027,252
INFO 2026-06-08 09:13:36 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:13s. Time for last 10,000,000: 16s. Last read position: chr8:144,086,005
INFO 2026-06-08 09:13:53 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:31s. Time for last 10,000,000: 17s. Last read position: chr9:99,055,269
INFO 2026-06-08 09:14:10 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:47s. Time for last 10,000,000: 16s. Last read position: chr9:134,796,847
INFO 2026-06-08 09:14:27 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:04s. Time for last 10,000,000: 16s. Last read position: chr10:59,906,215
INFO 2026-06-08 09:14:43 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:21s. Time for last 10,000,000: 16s. Last read position: chr10:104,037,708
INFO 2026-06-08 09:15:01 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:38s. Time for last 10,000,000: 17s. Last read position: chr11:16,738,736
INFO 2026-06-08 09:15:17 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:55s. Time for last 10,000,000: 16s. Last read position: chr11:64,237,421
INFO 2026-06-08 09:15:34 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 16s. Last read position: chr11:96,365,034
INFO 2026-06-08 09:15:51 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:28s. Time for last 10,000,000: 16s. Last read position: chr12:6,386,144
INFO 2026-06-08 09:16:10 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:47s. Time for last 10,000,000: 19s. Last read position: chr12:49,753,030
INFO 2026-06-08 09:16:28 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:06s. Time for last 10,000,000: 18s. Last read position: chr12:70,555,889
INFO 2026-06-08 09:16:45 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:23s. Time for last 10,000,000: 17s. Last read position: chr12:132,736,924
INFO 2026-06-08 09:17:02 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:39s. Time for last 10,000,000: 16s. Last read position: chr14:20,369,458
INFO 2026-06-08 09:17:18 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:56s. Time for last 10,000,000: 16s. Last read position: chr14:74,528,547
INFO 2026-06-08 09:17:35 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:13s. Time for last 10,000,000: 16s. Last read position: chr14:105,854,583
INFO 2026-06-08 09:17:52 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:29s. Time for last 10,000,000: 16s. Last read position: chr15:61,856,398
INFO 2026-06-08 09:18:09 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:46s. Time for last 10,000,000: 16s. Last read position: chr15:90,227,633
INFO 2026-06-08 09:18:25 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:03s. Time for last 10,000,000: 16s. Last read position: chr16:9,092,224
INFO 2026-06-08 09:18:42 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:20s. Time for last 10,000,000: 16s. Last read position: chr16:29,449,557
INFO 2026-06-08 09:18:59 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:36s. Time for last 10,000,000: 16s. Last read position: chr16:69,647,447
INFO 2026-06-08 09:19:15 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:53s. Time for last 10,000,000: 16s. Last read position: chr17:7,484,802
INFO 2026-06-08 09:19:32 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:09s. Time for last 10,000,000: 16s. Last read position: chr17:38,850,100
INFO 2026-06-08 09:19:49 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:26s. Time for last 10,000,000: 16s. Last read position: chr17:50,194,365
INFO 2026-06-08 09:20:05 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:43s. Time for last 10,000,000: 16s. Last read position: chr17:76,531,107
INFO 2026-06-08 09:20:22 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:59s. Time for last 10,000,000: 16s. Last read position: chr18:58,323,253
INFO 2026-06-08 09:20:38 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:16s. Time for last 10,000,000: 16s. Last read position: chr19:8,554,708
INFO 2026-06-08 09:20:55 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:32s. Time for last 10,000,000: 16s. Last read position: chr19:23,827,953
INFO 2026-06-08 09:21:11 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:48s. Time for last 10,000,000: 16s. Last read position: chr19:45,395,841
INFO 2026-06-08 09:21:27 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:05s. Time for last 10,000,000: 16s. Last read position: chr19:58,090,108
INFO 2026-06-08 09:21:44 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:21s. Time for last 10,000,000: 16s. Last read position: chr20:51,694,039
INFO 2026-06-08 09:22:00 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:37s. Time for last 10,000,000: 16s. Last read position: chr21:46,351,465
INFO 2026-06-08 09:22:16 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:53s. Time for last 10,000,000: 16s. Last read position: chr22:38,300,934
INFO 2026-06-08 09:22:32 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:10s. Time for last 10,000,000: 16s. Last read position: chrX:40,591,323
INFO 2026-06-08 09:22:49 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:27s. Time for last 10,000,000: 16s. Last read position: chrX:153,273,288
INFO 2026-06-08 09:23:06 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:23:06 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:23:06 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:23:06 MarkDuplicates Before output close freeMemory: 203919056; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:23:06 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:23:06 MarkDuplicates After output close freeMemory: 104141872; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:23:06 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.34 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory