File Info

Filename
samplesheet.csv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/eda2ad76546625097fd6a34bf53d30/samplesheet.csv
Size
27.8 KB
Task
NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:SAMPLESHEET_FROM_MERGED (samplesheet)
Attempt

Content

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sample,sample_type,fastq_1,fastq_2,strandedness
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659_6i-T1-TRNA-1_A23MVY2LT4_2,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/96/2ba64e90c9543bdea5d4bf4a72c675/659_6i-T1-TRNA-1_A23MVY2LT4_2_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/96/2ba64e90c9543bdea5d4bf4a72c675/659_6i-T1-TRNA-1_A23MVY2LT4_2_R2.fastq.gz,reverse
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659_Dl-T1-TRNA-1_A23MVY2LT4_2,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/406059b448b19f6e729932db9290d3/659_Dl-T1-TRNA-1_A23MVY2LT4_2_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/406059b448b19f6e729932db9290d3/659_Dl-T1-TRNA-1_A23MVY2LT4_2_R2.fastq.gz,reverse
659_Lx-T1-TRNA-1_A23MVY2LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/7bd51c798d81d1d5be9b25f3b3a19d/659_Lx-T1-TRNA-1_A23MVY2LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/7bd51c798d81d1d5be9b25f3b3a19d/659_Lx-T1-TRNA-1_A23MVY2LT4_1_R2.fastq.gz,reverse
659_Lx-T1-TRNA-1_A23MVY2LT4_2,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/2e824eb8dbece78c21f2d548d57b74/659_Lx-T1-TRNA-1_A23MVY2LT4_2_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/2e824eb8dbece78c21f2d548d57b74/659_Lx-T1-TRNA-1_A23MVY2LT4_2_R2.fastq.gz,reverse
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659_bCu-T1-TRNA-1_A23MVY2LT4_2,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/8d96d4b5acc0cac313fbd6c04aba05/659_bCu-T1-TRNA-1_A23MVY2LT4_2_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/8d96d4b5acc0cac313fbd6c04aba05/659_bCu-T1-TRNA-1_A23MVY2LT4_2_R2.fastq.gz,reverse
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659_bNS-T1-TRNA-1_A23MVY2LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/ac069313d645985c923f5ccad8d385/659_bNS-T1-TRNA-1_A23MVY2LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/ac069313d645985c923f5ccad8d385/659_bNS-T1-TRNA-1_A23MVY2LT4_1_R2.fastq.gz,reverse
659_bNS-T1-TRNA-1_A23MVY2LT4_2,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/a4cacc59c76455b30828e057d18ce7/659_bNS-T1-TRNA-1_A23MVY2LT4_2_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/a4cacc59c76455b30828e057d18ce7/659_bNS-T1-TRNA-1_A23MVY2LT4_2_R2.fastq.gz,reverse
659_bQZ-T1-TRNA-1_A23MVY2LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/53aab31f9d213826e2f51864e84816/659_bQZ-T1-TRNA-1_A23MVY2LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/53aab31f9d213826e2f51864e84816/659_bQZ-T1-TRNA-1_A23MVY2LT4_1_R2.fastq.gz,reverse
659_bQZ-T1-TRNA-1_A23MVY2LT4_2,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/f0ce5471b1cbc7322badc52d145b5a/659_bQZ-T1-TRNA-1_A23MVY2LT4_2_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/f0ce5471b1cbc7322badc52d145b5a/659_bQZ-T1-TRNA-1_A23MVY2LT4_2_R2.fastq.gz,reverse
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659_bhK-T1-TRNA-1_A23MVY2LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/13/494a762bf72b99a49a93688bdba74d/659_bhK-T1-TRNA-1_A23MVY2LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/13/494a762bf72b99a49a93688bdba74d/659_bhK-T1-TRNA-1_A23MVY2LT4_1_R2.fastq.gz,reverse
659_bhK-T1-TRNA-1_A23MVY2LT4_2,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/67/cabea52c5e8f23af3b58a4a2b35b47/659_bhK-T1-TRNA-1_A23MVY2LT4_2_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/67/cabea52c5e8f23af3b58a4a2b35b47/659_bhK-T1-TRNA-1_A23MVY2LT4_2_R2.fastq.gz,reverse
659_buD-T1-TRNA-1_A23MVY2LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/6c2478f334fc1595aead98a63bdbfa/659_buD-T1-TRNA-1_A23MVY2LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/6c2478f334fc1595aead98a63bdbfa/659_buD-T1-TRNA-1_A23MVY2LT4_1_R2.fastq.gz,reverse
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PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/26ee6f12f793cc8927148769054795/PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/26ee6f12f793cc8927148769054795/PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1_R2.fastq.gz,reverse
PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/71/31f29c176bd75b195dfe4d46eaa709/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/71/31f29c176bd75b195dfe4d46eaa709/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1_R2.fastq.gz,reverse
PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/da/2e1b0b1435798d98829298971cc5d5/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/da/2e1b0b1435798d98829298971cc5d5/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1_R2.fastq.gz,reverse
PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/727e5a7f66296101b8870bb76be0fa/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/727e5a7f66296101b8870bb76be0fa/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1_R2.fastq.gz,reverse
PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/168244e2c96acf4db5c86a646fe6f1/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/168244e2c96acf4db5c86a646fe6f1/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1_R2.fastq.gz,reverse
PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/d1295f36cf9152595bae7d8d625c48/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/d1295f36cf9152595bae7d8d625c48/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1_R2.fastq.gz,reverse
PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/21f80f342475a43179eff6265c2db5/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/21f80f342475a43179eff6265c2db5/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_R2.fastq.gz,reverse
PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/3bfa3f21041f7ffd8ce67b1440cabc/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/3bfa3f21041f7ffd8ce67b1440cabc/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_R2.fastq.gz,reverse
PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/df/938db0df27a5e45b687ceecde84ce8/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/df/938db0df27a5e45b687ceecde84ce8/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1_R2.fastq.gz,reverse
97 rows