File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/fb447b73441512ecdeaf3aebc977bd/.command.log
Size
2.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_6i-T1-TRNA-1_A23MVY2LT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/964ef30a689b144fb4a036145bd4f3/659_6i-T1-TRNA-1_A23MVY2LT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-bba2394f-ea06-4038-829e-f0bb41c45b0f/67/1d6e211d8f66f1c89f8ec9083ff96d/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/fb447b73441512ecdeaf3aebc977bd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/fb447b73441512ecdeaf3aebc977bd/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/2bf3f61fee3aaf91418ac245ae77de/659_6i-T1-TRNA-1_A23MVY2LT4_2.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TMPRSS2--ERG
starfusion
arriba
CPNE4--ADGRG7
starfusion
arriba
AC025884.2--IGH-@-ext
starfusion
TLK2--LINC01347
starfusion
TLK2P1--AC110079.1
starfusion
DAPK2--RAD51B
starfusion
TVP23C--CDRT4
arriba

  0%|          | 0/7 [00:00<?, ?it/s]
Processing TMPRSS2--ERG:   0%|          | 0/7 [00:00<?, ?it/s]
Processing TMPRSS2--ERG:  14%|█▍        | 1/7 [00:00<00:00,  9.25it/s]
Processing CPNE4--ADGRG7:  14%|█▍        | 1/7 [00:00<00:00,  9.25it/s]
Processing CPNE4--ADGRG7:  29%|██▊       | 2/7 [00:00<00:00,  9.48it/s]
Processing AC025884.2--IGH-@-ext:  29%|██▊       | 2/7 [00:00<00:00,  9.48it/s]
Processing AC025884.2--IGH-@-ext:  43%|████▎     | 3/7 [00:00<00:00,  9.56it/s]
Processing TLK2--LINC01347:  43%|████▎     | 3/7 [00:00<00:00,  9.56it/s]      
Processing TLK2--LINC01347:  57%|█████▋    | 4/7 [00:00<00:00,  9.59it/s]
Processing TLK2P1--AC110079.1:  57%|█████▋    | 4/7 [00:00<00:00,  9.59it/s]
Processing TLK2P1--AC110079.1:  71%|███████▏  | 5/7 [00:00<00:00,  9.61it/s]
Processing DAPK2--RAD51B:  71%|███████▏  | 5/7 [00:00<00:00,  9.61it/s]     
Processing DAPK2--RAD51B:  86%|████████▌ | 6/7 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  86%|████████▌ | 6/7 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4: 100%|██████████| 7/7 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4: 100%|██████████| 7/7 [00:00<00:00,  9.59it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory