Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/c45623e8a93965f664e6434c5e58d2/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/87fb07343d841fd0f2a7f2e6a94df1/659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/c45623e8a93965f664e6434c5e58d2/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
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paired = 200025845
unpaired = 4155798
MERGED PAIRED END READS = 200025845
MATES PROCESSED = 404207488
TOTAL READS = 204181643
DISTINCT READS = 4.4529e+07
DISTINCT COUNTS = 621
MAX COUNT = 865203
COUNTS OF 1 = 1.13961e+07
MAX TERMS = 100
OBSERVED COUNTS (865204)
1 11396063
2 6814327
3 5522743
4 4530225
5 3642785
6 2875816
7 2230505
8 1708162
9 1299802
10 981378
11 743162
12 563573
13 429719
14 330383
15 256401
16 200429
17 159086
18 127167
19 103434
20 84783
21 70704
22 59294
23 50025
24 42297
25 36016
26 31315
27 26440
28 22971
29 20029
30 17170
31 15176
32 13185
33 11572
34 9969
35 9056
36 7801
37 7035
38 6031
39 5431
40 4827
41 4372
42 3921
43 3408
44 3179
45 2890
46 2635
47 2418
48 2138
49 2006
50 1928
51 1696
52 1589
53 1465
54 1403
55 1341
56 1249
57 1156
58 1116
59 1007
60 937
61 904
62 857
63 777
64 729
65 674
66 621
67 632
68 602
69 582
70 515
71 477
72 451
73 422
74 397
75 379
76 392
77 381
78 350
79 333
80 287
81 322
82 296
83 298
84 256
85 221
86 243
87 220
88 218
89 221
90 216
91 187
92 201
93 210
94 171
95 186
96 181
97 171
98 135
99 132
100 120
101 129
102 141
103 140
104 134
105 117
106 107
107 120
108 98
109 117
110 92
111 98
112 84
113 88
114 89
115 76
116 90
117 79
118 80
119 93
120 73
121 72
122 66
123 73
124 58
125 67
126 64
127 74
128 70
129 63
130 64
131 52
132 49
133 78
134 37
135 49
136 49
137 49
138 47
139 49
140 44
141 31
142 36
143 41
144 34
145 35
146 37
147 34
148 36
149 39
150 35
151 33
152 34
153 32
154 27
155 28
156 37
157 31
158 26
159 30
160 32
161 20
162 29
163 36
164 31
165 24
166 25
167 32
168 23
169 15
170 25
171 36
172 25
173 18
174 21
175 23
176 17
177 26
178 15
179 24
180 13
181 19
182 19
183 12
184 22
185 25
186 12
187 19
188 15
189 13
190 11
191 19
192 13
193 21
194 20
195 10
196 12
197 22
198 8
199 15
200 12
201 16
202 25
203 11
204 10
205 4
206 12
207 16
208 18
209 20
210 9
211 20
212 17
213 10
214 20
215 21
216 7
217 9
218 13
219 7
220 8
221 12
222 12
223 8
224 6
225 6
226 6
227 6
228 7
229 9
230 6
231 10
232 11
233 9
234 4
235 10
236 6
237 4
238 10
239 3
240 9
241 7
242 14
243 11
244 4
245 8
246 5
247 8
248 6
249 8
250 8
251 2
252 10
253 6
254 9
255 6
256 9
257 7
258 9
259 4
260 5
261 7
262 3
263 7
264 8
265 8
266 4
267 5
268 4
269 8
270 2
271 7
272 5
273 3
274 7
275 4
276 4
277 6
278 5
279 10
280 4
281 1
282 3
283 5
284 3
285 5
286 9
287 4
288 2
289 4
290 1
291 1
292 4
293 4
294 3
295 1
296 2
297 6
298 2
299 3
300 6
301 3
302 1
303 2
304 1
305 3
306 3
307 1
308 1
309 5
310 2
311 1
312 4
313 1
314 2
316 3
317 1
318 3
319 1
320 3
321 2
322 5
323 3
324 1
325 2
326 3
327 3
328 4
329 1
330 3
331 3
332 4
333 4
334 4
335 1
336 4
337 1
338 3
339 3
340 1
341 5
342 3
343 5
344 2
346 1
347 2
348 3
349 2
350 2
351 3
352 1
353 1
354 4
355 3
356 3
357 2
358 1
359 3
360 1
362 4
363 1
364 2
365 1
366 1
368 1
369 2
370 3
372 1
373 4
374 2
375 2
376 1
377 2
379 1
381 2
383 3
384 1
385 3
386 4
387 1
388 1
389 1
390 3
391 2
392 1
393 2
394 3
396 1
397 3
398 2
399 1
400 2
401 1
402 1
404 2
406 1
407 1
409 3
411 3
414 2
415 2
416 1
417 3
418 1
419 1
420 1
422 2
423 1
424 3
426 2
427 1
428 2
429 2
431 1
432 1
434 2
435 2
437 1
438 2
439 1
440 1
441 1
442 1
444 2
445 1
446 2
451 1
453 3
458 2
459 2
461 1
462 1
465 1
467 1
471 1
473 1
474 1
475 1
478 2
479 3
480 1
482 2
483 1
485 2
486 1
489 2
490 1
491 2
493 1
496 1
500 1
504 2
508 1
514 2
516 1
517 2
521 1
524 2
526 3
532 1
537 1
539 1
540 1
542 1
546 1
547 1
549 1
551 1
553 1
555 1
558 1
562 1
576 2
578 1
579 1
581 1
582 1
584 1
585 1
587 1
590 1
593 1
597 2
605 1
606 1
607 1
611 2
612 1
614 1
625 1
632 1
636 1
637 1
640 1
644 2
645 1
653 2
655 1
663 1
667 1
673 1
674 1
679 2
681 1
682 1
687 1
697 1
705 1
707 1
711 1
721 2
732 1
733 1
747 1
752 1
758 1
766 1
774 1
782 1
786 1
789 1
791 1
795 1
797 1
814 1
816 1
818 1
821 1
826 1
828 1
840 1
844 1
863 2
881 1
882 1
883 1
901 1
902 1
917 1
926 1
929 1
943 1
950 1
1004 1
1013 1
1022 1
1024 1
1034 1
1037 1
1042 1
1066 1
1085 1
1087 1
1091 1
1104 1
1106 1
1107 1
1112 1
1115 1
1116 1
1130 1
1132 1
1134 1
1137 1
1149 1
1152 1
1154 1
1155 1
1172 1
1202 1
1212 1
1214 1
1226 1
1227 1
1244 1
1248 1
1254 1
1257 1
1265 1
1281 1
1293 1
1304 1
1310 1
1311 1
1322 1
1332 1
1345 1
1354 1
1357 1
1361 1
1383 1
1387 1
1391 1
1428 1
1450 1
1488 2
1493 1
1498 1
1511 1
1522 1
1561 1
1637 1
1654 1
1667 1
1773 1
1796 1
1808 1
1861 1
1884 1
1911 1
1941 1
2026 1
2101 1
2308 1
2823 1
3272 1
3770 1
4599 1
7975 1
8579 1
31352 1
865203 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
_.._..__......_..._........_._..........._._._...__._.._._.._..._....__.
._....................._._....._...._..__._......__.......
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]