Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/584a35093307a8e72aba342d3f45ee/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/ab24eebf9d28bc7f5d5563477a5aca/659_bQZ-T1-TRNA-1_A23MVY2LT4_2
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/584a35093307a8e72aba342d3f45ee/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/de656b5a389d2190ba8f1005c05180/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_bQZ-T1-TRNA-1_A23MVY2LT4_2/abundance.h5
Successfully converted 659_bQZ-T1-TRNA-1_A23MVY2LT4_2/abundance.h5 to 659_bQZ-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv
  Sample: 659_bQZ-T1-TRNA-1_A23MVY2LT4_2
  Mean Fragment Length: 162.7 bp
  Median Fragment Length: 151.0 bp
  pct_mito_est_counts: 0.005%
  pct_ribo_est_counts: 1.418%
  pct_hk_est_counts: 0.608%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.011%
  pct_ribo_tpm: 4.392%
  pct_hk_tpm: 0.935%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.014%