.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (659_6i-T1-TRNA-1_A23MVY2LT4_2)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/21b094e195346139dc95eba0b956e5/.command.err
Size: 8.6 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (659_6i-T1-TRNA-1_A23MVY2LT4_2)
Attempt
Content

Loading annotation
Read 3041209 records
Warning in parseGtfAttribute("exon_number", exons) :
  Failed to parse 'exon_number' attribute of 8 record(s).
Loading protein domains
Read 134356 records
Drawing fusion #1: TMPRSS2:ERG
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #2: TMPRSS2:ERG
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #3: TMPRSS2:ERG
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #4: TMPRSS2:ERG
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #5: TMPRSS2:ERG
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #6: TMPRSS2:ERG
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #7: CPNE4:ADGRG7
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #8: TLK2:LINC01347
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #9: TLK2P1:AC110079.1
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #10: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #11: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #12: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #13: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #14: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #15: DAPK2:RAD51B
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #16: DAPK2:RAD51B
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Done