Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/5ce7ea0dc5109ea4b05ddcf276e12b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/61f5051c05c1f2da17aa654d7f8d7d/659_cWx-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/5ce7ea0dc5109ea4b05ddcf276e12b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/831fa0e0a84d22d25a2feb8ebbc56c/659_cWx-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory