Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/cdddb5463469974f08597fdcafc2b9/fi_workdir/659_c95-T1-TRNA-1_A23MVY2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/8bae3b5ede6916e629298674bbd1eb/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/8bae3b5ede6916e629298674bbd1eb/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 12535
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 12535
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:12535
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 3 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL049641.1--EDA2R HAVANA gene 7263 11932 . + . FI_gene_label "EDA2R^ENSG00000131080.15" ; ID "AL049641.1--EDA2R^EDA2R^ENSG00000131080.15" ; ccdsid "CCDS56603.1" ; exon_id "ENSE00001756655.1" ; exon_number 1 ; gene_id "AL049641.1--EDA2R^EDA2R^ENSG00000131080.15" ; gene_name EDA2R ; gene_type protein_coding ; havana_gene "OTTHUMG00000021736.3" ; havana_transcript "OTTHUMT00000057003.2" ; hgnc_id "HGNC:17756" ; level 2 ; orig_coord_info "chrX,66615934,66616020,-" ; protein_id "ENSP00000253392.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "AL049641.1--EDA2R^ENST00000253392.5" ; transcript_name "EDA2R-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL049641.1--EDA2R HAVANA mRNA 7263 11932 . + . FI_gene_label "EDA2R^ENSG00000131080.15" ; ID "AL049641.1--EDA2R^ENST00000253392.5" ; Parent "AL049641.1--EDA2R^EDA2R^ENSG00000131080.15" ; ccdsid "CCDS56603.1" ; exon_id "ENSE00001756655.1" ; exon_number 1 ; gene_id "AL049641.1--EDA2R^EDA2R^ENSG00000131080.15" ; gene_name EDA2R ; gene_type protein_coding ; havana_gene "OTTHUMG00000021736.3" ; havana_transcript "OTTHUMT00000057003.2" ; hgnc_id "HGNC:17756" ; level 2 ; orig_coord_info "chrX,66615934,66616020,-" ; protein_id "ENSP00000253392.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "AL049641.1--EDA2R^ENST00000253392.5" ; transcript_name "EDA2R-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL669831.1--SEPTIN14 HAVANA gene 24499 38046 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "AL669831.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "AL669831.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL669831.1--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
AL669831.1--SEPTIN14 HAVANA mRNA 24499 38046 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "AL669831.1--SEPTIN14^ENST00000388975.4" ; Parent "AL669831.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "AL669831.1--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL669831.1--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ARSG--GLT1D1 HAVANA gene 25324 42400 . + . FI_gene_label "GLT1D1^ENSG00000151948.12" ; ID "ARSG--GLT1D1^GLT1D1^ENSG00000151948.12" ; ccdsid "CCDS9265.1" ; exon_id "ENSE00002245589.2" ; exon_number 1 ; gene_id "ARSG--GLT1D1^GLT1D1^ENSG00000151948.12" ; gene_name GLT1D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168437.3" ; havana_transcript "OTTHUMT00000399741.3" ; hgnc_id "HGNC:26483" ; level 2 ; orig_coord_info "chr12,128853582,128853649,+" ; protein_id "ENSP00000281703.6" ; tag basic MANE_Select CCDS ; transcript_id "ARSG--GLT1D1^ENST00000281703.11" ; transcript_name "GLT1D1-201" ; transcript_support_level 2 ; transcript_type protein_coding
ARSG--GLT1D1 HAVANA mRNA 25324 42400 . + . FI_gene_label "GLT1D1^ENSG00000151948.12" ; ID "ARSG--GLT1D1^ENST00000281703.11" ; Parent "ARSG--GLT1D1^GLT1D1^ENSG00000151948.12" ; ccdsid "CCDS9265.1" ; exon_id "ENSE00002245589.2" ; exon_number 1 ; gene_id "ARSG--GLT1D1^GLT1D1^ENSG00000151948.12" ; gene_name GLT1D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168437.3" ; havana_transcript "OTTHUMT00000399741.3" ; hgnc_id "HGNC:26483" ; level 2 ; orig_coord_info "chr12,128853582,128853649,+" ; protein_id "ENSP00000281703.6" ; tag basic MANE_Select CCDS ; transcript_id "ARSG--GLT1D1^ENST00000281703.11" ; transcript_name "GLT1D1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ARSG--GLT1D1 HAVANA gene 1001 22272 . + . FI_gene_label "ARSG^ENSG00000141337.13" ; ID "ARSG--GLT1D1^ARSG^ENSG00000141337.13" ; ccdsid "CCDS11676.1" ; exon_id "ENSE00001598531.1" ; exon_number 2 ; gene_id "ARSG--GLT1D1^ARSG^ENSG00000141337.13" ; gene_name ARSG ; gene_type protein_coding ; havana_gene "OTTHUMG00000179810.6" ; havana_transcript "OTTHUMT00000448369.1" ; hgnc_id "HGNC:24102" ; level 2 ; orig_coord_info "chr17,68307494,68307711,+" ; protein_id "ENSP00000407193.2" ; tag basic appris_principal_1 CCDS ; transcript_id "ARSG--GLT1D1^ENST00000448504.6" ; transcript_name "ARSG-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARSG--GLT1D1 HAVANA mRNA 1001 22272 . + . FI_gene_label "ARSG^ENSG00000141337.13" ; ID "ARSG--GLT1D1^ENST00000448504.6" ; Parent "ARSG--GLT1D1^ARSG^ENSG00000141337.13" ; ccdsid "CCDS11676.1" ; exon_id "ENSE00001598531.1" ; exon_number 2 ; gene_id "ARSG--GLT1D1^ARSG^ENSG00000141337.13" ; gene_name ARSG ; gene_type protein_coding ; havana_gene "OTTHUMG00000179810.6" ; havana_transcript "OTTHUMT00000448369.1" ; hgnc_id "HGNC:24102" ; level 2 ; orig_coord_info "chr17,68307494,68307711,+" ; protein_id "ENSP00000407193.2" ; tag basic appris_principal_1 CCDS ; transcript_id "ARSG--GLT1D1^ENST00000448504.6" ; transcript_name "ARSG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAIAP2--FP236383.3 HAVANA gene 1001 24597 . + . FI_gene_label "BAIAP2^ENSG00000175866.15" ; ID "BAIAP2--FP236383.3^BAIAP2^ENSG00000175866.15" ; ccdsid "CCDS11777.1" ; exon_id "ENSE00003642064.2" ; exon_number 1 ; gene_id "BAIAP2--FP236383.3^BAIAP2^ENSG00000175866.15" ; gene_name BAIAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177698.4" ; havana_transcript "OTTHUMT00000438547.2" ; hgnc_id "HGNC:947" ; level 2 ; orig_coord_info "chr17,81035255,81035308,+" ; protein_id "ENSP00000315685.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "BAIAP2--FP236383.3^ENST00000321280.11" ; transcript_name "BAIAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAIAP2--FP236383.3 HAVANA mRNA 1001 24597 . + . FI_gene_label "BAIAP2^ENSG00000175866.15" ; ID "BAIAP2--FP236383.3^ENST00000321280.11" ; Parent "BAIAP2--FP236383.3^BAIAP2^ENSG00000175866.15" ; ccdsid "CCDS11777.1" ; exon_id "ENSE00003642064.2" ; exon_number 1 ; gene_id "BAIAP2--FP236383.3^BAIAP2^ENSG00000175866.15" ; gene_name BAIAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177698.4" ; havana_transcript "OTTHUMT00000438547.2" ; hgnc_id "HGNC:947" ; level 2 ; orig_coord_info "chr17,81035255,81035308,+" ; protein_id "ENSP00000315685.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "BAIAP2--FP236383.3^ENST00000321280.11" ; transcript_name "BAIAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAIAP2--FP236383.6 HAVANA gene 1001 24597 . + . FI_gene_label "BAIAP2^ENSG00000175866.15" ; ID "BAIAP2--FP236383.6^BAIAP2^ENSG00000175866.15" ; ccdsid "CCDS11777.1" ; exon_id "ENSE00003642064.2" ; exon_number 1 ; gene_id "BAIAP2--FP236383.6^BAIAP2^ENSG00000175866.15" ; gene_name BAIAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177698.4" ; havana_transcript "OTTHUMT00000438547.2" ; hgnc_id "HGNC:947" ; level 2 ; orig_coord_info "chr17,81035255,81035308,+" ; protein_id "ENSP00000315685.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "BAIAP2--FP236383.6^ENST00000321280.11" ; transcript_name "BAIAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAIAP2--FP236383.6 HAVANA mRNA 1001 24597 . + . FI_gene_label "BAIAP2^ENSG00000175866.15" ; ID "BAIAP2--FP236383.6^ENST00000321280.11" ; Parent "BAIAP2--FP236383.6^BAIAP2^ENSG00000175866.15" ; ccdsid "CCDS11777.1" ; exon_id "ENSE00003642064.2" ; exon_number 1 ; gene_id "BAIAP2--FP236383.6^BAIAP2^ENSG00000175866.15" ; gene_name BAIAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177698.4" ; havana_transcript "OTTHUMT00000438547.2" ; hgnc_id "HGNC:947" ; level 2 ; orig_coord_info "chr17,81035255,81035308,+" ; protein_id "ENSP00000315685.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "BAIAP2--FP236383.6^ENST00000321280.11" ; transcript_name "BAIAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C16orf70--CES4A HAVANA gene 1001 16487 . + . FI_gene_label "C16orf70^ENSG00000125149.12" ; ID "C16orf70--CES4A^C16orf70^ENSG00000125149.12" ; ccdsid "CCDS10828.1" ; exon_id "ENSE00001206381.4" ; exon_number 1 ; gene_id "C16orf70--CES4A^C16orf70^ENSG00000125149.12" ; gene_name C16orf70 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137510.6" ; havana_transcript "OTTHUMT00000268829.3" ; hgnc_id "HGNC:29564" ; level 2 ; orig_coord_info "chr16,67110176,67110239,+" ; protein_id "ENSP00000219139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf70--CES4A^ENST00000219139.8" ; transcript_name "C16orf70-201" ; transcript_support_level 1 ; transcript_type protein_coding
C16orf70--CES4A HAVANA mRNA 1001 16487 . + . FI_gene_label "C16orf70^ENSG00000125149.12" ; ID "C16orf70--CES4A^ENST00000219139.8" ; Parent "C16orf70--CES4A^C16orf70^ENSG00000125149.12" ; ccdsid "CCDS10828.1" ; exon_id "ENSE00001206381.4" ; exon_number 1 ; gene_id "C16orf70--CES4A^C16orf70^ENSG00000125149.12" ; gene_name C16orf70 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137510.6" ; havana_transcript "OTTHUMT00000268829.3" ; hgnc_id "HGNC:29564" ; level 2 ; orig_coord_info "chr16,67110176,67110239,+" ; protein_id "ENSP00000219139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf70--CES4A^ENST00000219139.8" ; transcript_name "C16orf70-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C16orf70--CES4A HAVANA gene 22295 29731 . + . FI_gene_label "CES4A^ENSG00000172824.16" ; ID "C16orf70--CES4A^CES4A^ENSG00000172824.16" ; exon_id "ENSE00002270778.1" ; exon_number 1 ; gene_id "C16orf70--CES4A^CES4A^ENSG00000172824.16" ; gene_name CES4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167866.7" ; havana_transcript "OTTHUMT00000396717.1" ; hgnc_id "HGNC:26741" ; level 2 ; orig_coord_info "chr16,67000672,67000779,+" ; protein_id "ENSP00000444182.1" ; transcript_id "C16orf70--CES4A^ENST00000535543.5" ; transcript_name "CES4A-202" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
C16orf70--CES4A HAVANA mRNA 22295 29731 . + . FI_gene_label "CES4A^ENSG00000172824.16" ; ID "C16orf70--CES4A^ENST00000535543.5" ; Parent "C16orf70--CES4A^CES4A^ENSG00000172824.16" ; exon_id "ENSE00002270778.1" ; exon_number 1 ; gene_id "C16orf70--CES4A^CES4A^ENSG00000172824.16" ; gene_name CES4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167866.7" ; havana_transcript "OTTHUMT00000396717.1" ; hgnc_id "HGNC:26741" ; level 2 ; orig_coord_info "chr16,67000672,67000779,+" ; protein_id "ENSP00000444182.1" ; transcript_id "C16orf70--CES4A^ENST00000535543.5" ; transcript_name "CES4A-202" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^ENST00000239859.8" ; Parent "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^ENST00000317764.6" ; Parent "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHD2--ACSS3 HAVANA gene 73848 90757 . + . FI_gene_label "ACSS3^ENSG00000111058.8" ; ID "CHD2--ACSS3^ACSS3^ENSG00000111058.8" ; ccdsid "CCDS81716.1" ; exon_id "ENSE00001329127.4" ; exon_number 1 ; gene_id "CHD2--ACSS3^ACSS3^ENSG00000111058.8" ; gene_name ACSS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170179.6" ; havana_transcript "OTTHUMT00000407795.1" ; hgnc_id "HGNC:24723" ; level 2 ; orig_coord_info "chr12,81078121,81078428,+" ; protein_id "ENSP00000261206.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "CHD2--ACSS3^ENST00000261206.7" ; transcript_name "ACSS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
CHD2--ACSS3 HAVANA mRNA 73848 90757 . + . FI_gene_label "ACSS3^ENSG00000111058.8" ; ID "CHD2--ACSS3^ENST00000261206.7" ; Parent "CHD2--ACSS3^ACSS3^ENSG00000111058.8" ; ccdsid "CCDS81716.1" ; exon_id "ENSE00001329127.4" ; exon_number 1 ; gene_id "CHD2--ACSS3^ACSS3^ENSG00000111058.8" ; gene_name ACSS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170179.6" ; havana_transcript "OTTHUMT00000407795.1" ; hgnc_id "HGNC:24723" ; level 2 ; orig_coord_info "chr12,81078121,81078428,+" ; protein_id "ENSP00000261206.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "CHD2--ACSS3^ENST00000261206.7" ; transcript_name "ACSS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHD2--ACSS3 HAVANA gene 1136 57872 . + . FI_gene_label "CHD2^ENSG00000173575.22" ; ID "CHD2--ACSS3^CHD2^ENSG00000173575.22" ; ccdsid "CCDS10374.2" ; exon_id "ENSE00003552452.1" ; exon_number 2 ; gene_id "CHD2--ACSS3^CHD2^ENSG00000173575.22" ; gene_name CHD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000185958.14" ; havana_transcript "OTTHUMT00000313528.5" ; hgnc_id "HGNC:1917" ; level 1 ; orig_coord_info "chr15,92901238,92901299,+" ; protein_id "ENSP00000377747.4" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "CHD2--ACSS3^ENST00000394196.9" ; transcript_name "CHD2-201" ; transcript_support_level 5 ; transcript_type protein_coding
CHD2--ACSS3 HAVANA mRNA 1136 57872 . + . FI_gene_label "CHD2^ENSG00000173575.22" ; ID "CHD2--ACSS3^ENST00000394196.9" ; Parent "CHD2--ACSS3^CHD2^ENSG00000173575.22" ; ccdsid "CCDS10374.2" ; exon_id "ENSE00003552452.1" ; exon_number 2 ; gene_id "CHD2--ACSS3^CHD2^ENSG00000173575.22" ; gene_name CHD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000185958.14" ; havana_transcript "OTTHUMT00000313528.5" ; hgnc_id "HGNC:1917" ; level 1 ; orig_coord_info "chr15,92901238,92901299,+" ; protein_id "ENSP00000377747.4" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "CHD2--ACSS3^ENST00000394196.9" ; transcript_name "CHD2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CRYZL2P--SEC16B HAVANA gene 18631 44079 . + . FI_gene_label "SEC16B^ENSG00000120341.18" ; ID "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; ccdsid "CCDS44281.1" ; exon_id "ENSE00003707644.1" ; exon_number 2 ; gene_id "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; gene_name SEC16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167206.20" ; havana_transcript "OTTHUMT00000084773.22" ; hgnc_id "HGNC:30301" ; level 2 ; orig_coord_info "chr1,177967683,177967981,-" ; protein_id "ENSP00000308339.6" ; tag basic appris_principal_2 CCDS ; transcript_id "CRYZL2P--SEC16B^ENST00000308284.10" ; transcript_name "SEC16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRYZL2P--SEC16B HAVANA mRNA 18631 44079 . + . FI_gene_label "SEC16B^ENSG00000120341.18" ; ID "CRYZL2P--SEC16B^ENST00000308284.10" ; Parent "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; ccdsid "CCDS44281.1" ; exon_id "ENSE00003707644.1" ; exon_number 2 ; gene_id "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; gene_name SEC16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167206.20" ; havana_transcript "OTTHUMT00000084773.22" ; hgnc_id "HGNC:30301" ; level 2 ; orig_coord_info "chr1,177967683,177967981,-" ; protein_id "ENSP00000308339.6" ; tag basic appris_principal_2 CCDS ; transcript_id "CRYZL2P--SEC16B^ENST00000308284.10" ; transcript_name "SEC16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DEGS1--FBXO28 HAVANA gene 2193 7474 . + . FI_gene_label "DEGS1^ENSG00000143753.13" ; ID "DEGS1--FBXO28^DEGS1^ENSG00000143753.13" ; ccdsid "CCDS1540.1" ; exon_id "ENSE00001866625.2" ; exon_number 1 ; gene_id "DEGS1--FBXO28^DEGS1^ENSG00000143753.13" ; gene_name DEGS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037496.5" ; havana_transcript "OTTHUMT00000091285.3" ; hgnc_id "HGNC:13709" ; level 2 ; orig_coord_info "chr1,224183337,224183418,+" ; protein_id "ENSP00000316476.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DEGS1--FBXO28^ENST00000323699.9" ; transcript_name "DEGS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
DEGS1--FBXO28 HAVANA mRNA 2193 7474 . + . FI_gene_label "DEGS1^ENSG00000143753.13" ; ID "DEGS1--FBXO28^ENST00000323699.9" ; Parent "DEGS1--FBXO28^DEGS1^ENSG00000143753.13" ; ccdsid "CCDS1540.1" ; exon_id "ENSE00001866625.2" ; exon_number 1 ; gene_id "DEGS1--FBXO28^DEGS1^ENSG00000143753.13" ; gene_name DEGS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037496.5" ; havana_transcript "OTTHUMT00000091285.3" ; hgnc_id "HGNC:13709" ; level 2 ; orig_coord_info "chr1,224183337,224183418,+" ; protein_id "ENSP00000316476.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DEGS1--FBXO28^ENST00000323699.9" ; transcript_name "DEGS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DEGS1--FBXO28 HAVANA gene 10475 20494 . + . FI_gene_label "FBXO28^ENSG00000143756.12" ; ID "DEGS1--FBXO28^FBXO28^ENSG00000143756.12" ; ccdsid "CCDS1539.1" ; exon_id "ENSE00001957764.1" ; exon_number 1 ; gene_id "DEGS1--FBXO28^FBXO28^ENSG00000143756.12" ; gene_name FBXO28 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037495.3" ; havana_transcript "OTTHUMT00000091283.3" ; hgnc_id "HGNC:29046" ; level 2 ; orig_coord_info "chr1,224114130,224114396,+" ; protein_id "ENSP00000355827.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DEGS1--FBXO28^ENST00000366862.10" ; transcript_name "FBXO28-201" ; transcript_support_level 1 ; transcript_type protein_coding
DEGS1--FBXO28 HAVANA mRNA 10475 20494 . + . FI_gene_label "FBXO28^ENSG00000143756.12" ; ID "DEGS1--FBXO28^ENST00000366862.10" ; Parent "DEGS1--FBXO28^FBXO28^ENSG00000143756.12" ; ccdsid "CCDS1539.1" ; exon_id "ENSE00001957764.1" ; exon_number 1 ; gene_id "DEGS1--FBXO28^FBXO28^ENSG00000143756.12" ; gene_name FBXO28 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037495.3" ; havana_transcript "OTTHUMT00000091283.3" ; hgnc_id "HGNC:29046" ; level 2 ; orig_coord_info "chr1,224114130,224114396,+" ; protein_id "ENSP00000355827.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DEGS1--FBXO28^ENST00000366862.10" ; transcript_name "FBXO28-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DIABLO--GRHL2 HAVANA gene 2418 13245 . + . FI_gene_label "DIABLO^ENSG00000184047.20" ; ID "DIABLO--GRHL2^DIABLO^ENSG00000184047.20" ; exon_id "ENSE00001693864.2" ; exon_number 1 ; gene_id "DIABLO--GRHL2^DIABLO^ENSG00000184047.20" ; gene_name DIABLO ; gene_type protein_coding ; havana_transcript "OTTHUMT00000495544.1" ; hgnc_id "HGNC:21528" ; level 2 ; orig_coord_info "chr12,122225965,122226014,-" ; protein_id "ENSP00000267169.7" ; tag RNA_Seq_supported_only basic ; transcript_id "DIABLO--GRHL2^ENST00000267169.11" ; transcript_name "DIABLO-201" ; transcript_support_level 1 ; transcript_type protein_coding
DIABLO--GRHL2 HAVANA mRNA 2418 13245 . + . FI_gene_label "DIABLO^ENSG00000184047.20" ; ID "DIABLO--GRHL2^ENST00000267169.11" ; Parent "DIABLO--GRHL2^DIABLO^ENSG00000184047.20" ; exon_id "ENSE00001693864.2" ; exon_number 1 ; gene_id "DIABLO--GRHL2^DIABLO^ENSG00000184047.20" ; gene_name DIABLO ; gene_type protein_coding ; havana_transcript "OTTHUMT00000495544.1" ; hgnc_id "HGNC:21528" ; level 2 ; orig_coord_info "chr12,122225965,122226014,-" ; protein_id "ENSP00000267169.7" ; tag RNA_Seq_supported_only basic ; transcript_id "DIABLO--GRHL2^ENST00000267169.11" ; transcript_name "DIABLO-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DIABLO--GRHL2 HAVANA gene 16696 34097 . + . FI_gene_label "GRHL2^ENSG00000083307.12" ; ID "DIABLO--GRHL2^GRHL2^ENSG00000083307.12" ; ccdsid "CCDS83312.1" ; exon_id "ENSE00003671771.1" ; exon_number 2 ; gene_id "DIABLO--GRHL2^GRHL2^ENSG00000083307.12" ; gene_name GRHL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149915.5" ; havana_transcript "OTTHUMT00000313883.1" ; hgnc_id "HGNC:2799" ; level 2 ; orig_coord_info "chr8,101543269,101543436,+" ; protein_id "ENSP00000379260.1" ; tag basic CCDS ; transcript_id "DIABLO--GRHL2^ENST00000395927.1" ; transcript_name "GRHL2-201" ; transcript_support_level 2 ; transcript_type protein_coding
DIABLO--GRHL2 HAVANA mRNA 16696 34097 . + . FI_gene_label "GRHL2^ENSG00000083307.12" ; ID "DIABLO--GRHL2^ENST00000395927.1" ; Parent "DIABLO--GRHL2^GRHL2^ENSG00000083307.12" ; ccdsid "CCDS83312.1" ; exon_id "ENSE00003671771.1" ; exon_number 2 ; gene_id "DIABLO--GRHL2^GRHL2^ENSG00000083307.12" ; gene_name GRHL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149915.5" ; havana_transcript "OTTHUMT00000313883.1" ; hgnc_id "HGNC:2799" ; level 2 ; orig_coord_info "chr8,101543269,101543436,+" ; protein_id "ENSP00000379260.1" ; tag basic CCDS ; transcript_id "DIABLO--GRHL2^ENST00000395927.1" ; transcript_name "GRHL2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DNM1L--FGD4 HAVANA gene 1104 23928 . + . FI_gene_label "DNM1L^ENSG00000087470.19" ; ID "DNM1L--FGD4^DNM1L^ENSG00000087470.19" ; ccdsid "CCDS8728.1" ; exon_id "ENSE00002365308.1" ; exon_number 1 ; gene_id "DNM1L--FGD4^DNM1L^ENSG00000087470.19" ; gene_name DNM1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000169451.3" ; havana_transcript "OTTHUMT00000404127.1" ; hgnc_id "HGNC:2973" ; level 2 ; orig_coord_info "chr12,32679364,32679465,+" ; protein_id "ENSP00000266481.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "DNM1L--FGD4^ENST00000266481.10" ; transcript_name "DNM1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
DNM1L--FGD4 HAVANA mRNA 1104 23928 . + . FI_gene_label "DNM1L^ENSG00000087470.19" ; ID "DNM1L--FGD4^ENST00000266481.10" ; Parent "DNM1L--FGD4^DNM1L^ENSG00000087470.19" ; ccdsid "CCDS8728.1" ; exon_id "ENSE00002365308.1" ; exon_number 1 ; gene_id "DNM1L--FGD4^DNM1L^ENSG00000087470.19" ; gene_name DNM1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000169451.3" ; havana_transcript "OTTHUMT00000404127.1" ; hgnc_id "HGNC:2973" ; level 2 ; orig_coord_info "chr12,32679364,32679465,+" ; protein_id "ENSP00000266481.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "DNM1L--FGD4^ENST00000266481.10" ; transcript_name "DNM1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DNM1L--FGD4 HAVANA gene 30930 55256 . + . FI_gene_label "FGD4^ENSG00000139132.15" ; ID "DNM1L--FGD4^FGD4^ENSG00000139132.15" ; exon_id "ENSE00003586205.1" ; exon_number 3 ; gene_id "DNM1L--FGD4^FGD4^ENSG00000139132.15" ; gene_name FGD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137374.7" ; havana_transcript "OTTHUMT00000268019.2" ; hgnc_id "HGNC:19125" ; level 2 ; orig_coord_info "chr12,32576358,32576449,+" ; protein_id "ENSP00000379089.1" ; transcript_id "DNM1L--FGD4^ENST00000395740.5" ; transcript_name "FGD4-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
DNM1L--FGD4 HAVANA mRNA 30930 55256 . + . FI_gene_label "FGD4^ENSG00000139132.15" ; ID "DNM1L--FGD4^ENST00000395740.5" ; Parent "DNM1L--FGD4^FGD4^ENSG00000139132.15" ; exon_id "ENSE00003586205.1" ; exon_number 3 ; gene_id "DNM1L--FGD4^FGD4^ENSG00000139132.15" ; gene_name FGD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137374.7" ; havana_transcript "OTTHUMT00000268019.2" ; hgnc_id "HGNC:19125" ; level 2 ; orig_coord_info "chr12,32576358,32576449,+" ; protein_id "ENSP00000379089.1" ; transcript_id "DNM1L--FGD4^ENST00000395740.5" ; transcript_name "FGD4-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
ERBB2--FP236383.3 HAVANA gene 5981 25761 . + . FI_gene_label "ERBB2^ENSG00000141736.14" ; ID "ERBB2--FP236383.3^ERBB2^ENSG00000141736.14" ; ccdsid "CCDS32642.1" ; exon_id "ENSE00003909903.1" ; exon_number 1 ; gene_id "ERBB2--FP236383.3^ERBB2^ENSG00000141736.14" ; gene_name ERBB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179300.3" ; havana_transcript "OTTHUMT00000445621.2" ; hgnc_id "HGNC:3430" ; level 2 ; orig_coord_info "chr17,39700239,39700311,+" ; protein_id "ENSP00000269571.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERBB2--FP236383.3^ENST00000269571.10" ; transcript_name "ERBB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERBB2--FP236383.3 HAVANA mRNA 5981 25761 . + . FI_gene_label "ERBB2^ENSG00000141736.14" ; ID "ERBB2--FP236383.3^ENST00000269571.10" ; Parent "ERBB2--FP236383.3^ERBB2^ENSG00000141736.14" ; ccdsid "CCDS32642.1" ; exon_id "ENSE00003909903.1" ; exon_number 1 ; gene_id "ERBB2--FP236383.3^ERBB2^ENSG00000141736.14" ; gene_name ERBB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179300.3" ; havana_transcript "OTTHUMT00000445621.2" ; hgnc_id "HGNC:3430" ; level 2 ; orig_coord_info "chr17,39700239,39700311,+" ; protein_id "ENSP00000269571.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERBB2--FP236383.3^ENST00000269571.10" ; transcript_name "ERBB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERBB2--FP671120.4 HAVANA gene 5981 25761 . + . FI_gene_label "ERBB2^ENSG00000141736.14" ; ID "ERBB2--FP671120.4^ERBB2^ENSG00000141736.14" ; ccdsid "CCDS32642.1" ; exon_id "ENSE00003909903.1" ; exon_number 1 ; gene_id "ERBB2--FP671120.4^ERBB2^ENSG00000141736.14" ; gene_name ERBB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179300.3" ; havana_transcript "OTTHUMT00000445621.2" ; hgnc_id "HGNC:3430" ; level 2 ; orig_coord_info "chr17,39700239,39700311,+" ; protein_id "ENSP00000269571.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERBB2--FP671120.4^ENST00000269571.10" ; transcript_name "ERBB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERBB2--FP671120.4 HAVANA mRNA 5981 25761 . + . FI_gene_label "ERBB2^ENSG00000141736.14" ; ID "ERBB2--FP671120.4^ENST00000269571.10" ; Parent "ERBB2--FP671120.4^ERBB2^ENSG00000141736.14" ; ccdsid "CCDS32642.1" ; exon_id "ENSE00003909903.1" ; exon_number 1 ; gene_id "ERBB2--FP671120.4^ERBB2^ENSG00000141736.14" ; gene_name ERBB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179300.3" ; havana_transcript "OTTHUMT00000445621.2" ; hgnc_id "HGNC:3430" ; level 2 ; orig_coord_info "chr17,39700239,39700311,+" ; protein_id "ENSP00000269571.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERBB2--FP671120.4^ENST00000269571.10" ; transcript_name "ERBB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERBB2--THRA HAVANA gene 32265 47736 . + . FI_gene_label "THRA^ENSG00000126351.13" ; ID "ERBB2--THRA^THRA^ENSG00000126351.13" ; ccdsid "CCDS11360.1" ; exon_id "ENSE00001254896.3" ; exon_number 2 ; gene_id "ERBB2--THRA^THRA^ENSG00000126351.13" ; gene_name THRA ; gene_type protein_coding ; havana_gene "OTTHUMG00000133332.3" ; havana_transcript "OTTHUMT00000257160.2" ; hgnc_id "HGNC:11796" ; level 2 ; orig_coord_info "chr17,40074489,40074541,+" ; protein_id "ENSP00000264637.4" ; tag basic CCDS ; transcript_id "ERBB2--THRA^ENST00000264637.8" ; transcript_name "THRA-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERBB2--THRA HAVANA mRNA 32265 47736 . + . FI_gene_label "THRA^ENSG00000126351.13" ; ID "ERBB2--THRA^ENST00000264637.8" ; Parent "ERBB2--THRA^THRA^ENSG00000126351.13" ; ccdsid "CCDS11360.1" ; exon_id "ENSE00001254896.3" ; exon_number 2 ; gene_id "ERBB2--THRA^THRA^ENSG00000126351.13" ; gene_name THRA ; gene_type protein_coding ; havana_gene "OTTHUMG00000133332.3" ; havana_transcript "OTTHUMT00000257160.2" ; hgnc_id "HGNC:11796" ; level 2 ; orig_coord_info "chr17,40074489,40074541,+" ; protein_id "ENSP00000264637.4" ; tag basic CCDS ; transcript_id "ERBB2--THRA^ENST00000264637.8" ; transcript_name "THRA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERBB2--THRA HAVANA gene 5981 25761 . + . FI_gene_label "ERBB2^ENSG00000141736.14" ; ID "ERBB2--THRA^ERBB2^ENSG00000141736.14" ; ccdsid "CCDS32642.1" ; exon_id "ENSE00003909903.1" ; exon_number 1 ; gene_id "ERBB2--THRA^ERBB2^ENSG00000141736.14" ; gene_name ERBB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179300.3" ; havana_transcript "OTTHUMT00000445621.2" ; hgnc_id "HGNC:3430" ; level 2 ; orig_coord_info "chr17,39700239,39700311,+" ; protein_id "ENSP00000269571.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERBB2--THRA^ENST00000269571.10" ; transcript_name "ERBB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERBB2--THRA HAVANA mRNA 5981 25761 . + . FI_gene_label "ERBB2^ENSG00000141736.14" ; ID "ERBB2--THRA^ENST00000269571.10" ; Parent "ERBB2--THRA^ERBB2^ENSG00000141736.14" ; ccdsid "CCDS32642.1" ; exon_id "ENSE00003909903.1" ; exon_number 1 ; gene_id "ERBB2--THRA^ERBB2^ENSG00000141736.14" ; gene_name ERBB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179300.3" ; havana_transcript "OTTHUMT00000445621.2" ; hgnc_id "HGNC:3430" ; level 2 ; orig_coord_info "chr17,39700239,39700311,+" ; protein_id "ENSP00000269571.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERBB2--THRA^ENST00000269571.10" ; transcript_name "ERBB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FP236383.3--PPP1R1B HAVANA gene 15760 24203 . + . FI_gene_label "PPP1R1B^ENSG00000131771.14" ; ID "FP236383.3--PPP1R1B^PPP1R1B^ENSG00000131771.14" ; ccdsid "CCDS11339.1" ; exon_id "ENSE00002305674.3" ; exon_number 1 ; gene_id "FP236383.3--PPP1R1B^PPP1R1B^ENSG00000131771.14" ; gene_name PPP1R1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000133210.8" ; havana_transcript "OTTHUMT00000256925.3" ; hgnc_id "HGNC:9287" ; level 2 ; orig_coord_info "chr17,39627393,39627473,+" ; protein_id "ENSP00000254079.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FP236383.3--PPP1R1B^ENST00000254079.9" ; transcript_name "PPP1R1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
FP236383.3--PPP1R1B HAVANA mRNA 15760 24203 . + . FI_gene_label "PPP1R1B^ENSG00000131771.14" ; ID "FP236383.3--PPP1R1B^ENST00000254079.9" ; Parent "FP236383.3--PPP1R1B^PPP1R1B^ENSG00000131771.14" ; ccdsid "CCDS11339.1" ; exon_id "ENSE00002305674.3" ; exon_number 1 ; gene_id "FP236383.3--PPP1R1B^PPP1R1B^ENSG00000131771.14" ; gene_name PPP1R1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000133210.8" ; havana_transcript "OTTHUMT00000256925.3" ; hgnc_id "HGNC:9287" ; level 2 ; orig_coord_info "chr17,39627393,39627473,+" ; protein_id "ENSP00000254079.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FP236383.3--PPP1R1B^ENST00000254079.9" ; transcript_name "PPP1R1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FSIP1--AC013652.1 HAVANA mRNA 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^ENST00000350221.4" ; Parent "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRB7--STARD3 HAVANA gene 1012 9289 . + . FI_gene_label "GRB7^ENSG00000141738.14" ; ID "GRB7--STARD3^GRB7^ENSG00000141738.14" ; ccdsid "CCDS11345.1" ; exon_id "ENSE00003687545.1" ; exon_number 2 ; gene_id "GRB7--STARD3^GRB7^ENSG00000141738.14" ; gene_name GRB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133253.6" ; havana_transcript "OTTHUMT00000257024.3" ; hgnc_id "HGNC:4567" ; level 2 ; orig_coord_info "chr17,39742302,39742456,+" ; protein_id "ENSP00000310771.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRB7--STARD3^ENST00000309156.9" ; transcript_name "GRB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRB7--STARD3 HAVANA mRNA 1012 9289 . + . FI_gene_label "GRB7^ENSG00000141738.14" ; ID "GRB7--STARD3^ENST00000309156.9" ; Parent "GRB7--STARD3^GRB7^ENSG00000141738.14" ; ccdsid "CCDS11345.1" ; exon_id "ENSE00003687545.1" ; exon_number 2 ; gene_id "GRB7--STARD3^GRB7^ENSG00000141738.14" ; gene_name GRB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133253.6" ; havana_transcript "OTTHUMT00000257024.3" ; hgnc_id "HGNC:4567" ; level 2 ; orig_coord_info "chr17,39742302,39742456,+" ; protein_id "ENSP00000310771.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRB7--STARD3^ENST00000309156.9" ; transcript_name "GRB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRB7--STARD3 HAVANA gene 12350 24024 . + . FI_gene_label "STARD3^ENSG00000131748.16" ; ID "GRB7--STARD3^STARD3^ENSG00000131748.16" ; ccdsid "CCDS11341.1" ; exon_id "ENSE00003493315.1" ; exon_number 2 ; gene_id "GRB7--STARD3^STARD3^ENSG00000131748.16" ; gene_name STARD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133213.13" ; havana_transcript "OTTHUMT00000256933.2" ; hgnc_id "HGNC:17579" ; level 2 ; orig_coord_info "chr17,39653532,39653750,+" ; protein_id "ENSP00000337446.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRB7--STARD3^ENST00000336308.10" ; transcript_name "STARD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRB7--STARD3 HAVANA mRNA 12350 24024 . + . FI_gene_label "STARD3^ENSG00000131748.16" ; ID "GRB7--STARD3^ENST00000336308.10" ; Parent "GRB7--STARD3^STARD3^ENSG00000131748.16" ; ccdsid "CCDS11341.1" ; exon_id "ENSE00003493315.1" ; exon_number 2 ; gene_id "GRB7--STARD3^STARD3^ENSG00000131748.16" ; gene_name STARD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133213.13" ; havana_transcript "OTTHUMT00000256933.2" ; hgnc_id "HGNC:17579" ; level 2 ; orig_coord_info "chr17,39653532,39653750,+" ; protein_id "ENSP00000337446.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRB7--STARD3^ENST00000336308.10" ; transcript_name "STARD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HOMER2--AC124066.1 HAVANA gene 4781 16293 . + . FI_gene_label "HOMER2^ENSG00000103942.13" ; ID "HOMER2--AC124066.1^HOMER2^ENSG00000103942.13" ; ccdsid "CCDS45334.1" ; exon_id "ENSE00002568521.1" ; exon_number 1 ; gene_id "HOMER2--AC124066.1^HOMER2^ENSG00000103942.13" ; gene_name HOMER2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172462.7" ; havana_transcript "OTTHUMT00000418689.1" ; hgnc_id "HGNC:17513" ; level 2 ; orig_coord_info "chr15,82952531,82952535,-" ; protein_id "ENSP00000305632.8" ; tag basic appris_principal_1 CCDS ; transcript_id "HOMER2--AC124066.1^ENST00000304231.12" ; transcript_name "HOMER2-201" ; transcript_support_level 5 ; transcript_type protein_coding
HOMER2--AC124066.1 HAVANA mRNA 4781 16293 . + . FI_gene_label "HOMER2^ENSG00000103942.13" ; ID "HOMER2--AC124066.1^ENST00000304231.12" ; Parent "HOMER2--AC124066.1^HOMER2^ENSG00000103942.13" ; ccdsid "CCDS45334.1" ; exon_id "ENSE00002568521.1" ; exon_number 1 ; gene_id "HOMER2--AC124066.1^HOMER2^ENSG00000103942.13" ; gene_name HOMER2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172462.7" ; havana_transcript "OTTHUMT00000418689.1" ; hgnc_id "HGNC:17513" ; level 2 ; orig_coord_info "chr15,82952531,82952535,-" ; protein_id "ENSP00000305632.8" ; tag basic appris_principal_1 CCDS ; transcript_id "HOMER2--AC124066.1^ENST00000304231.12" ; transcript_name "HOMER2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
IGH-@-ext--KLHL35 HAVANA gene 1296942 1304039 . + . FI_gene_label "KLHL35^ENSG00000149243.16" ; ID "IGH-@-ext--KLHL35^KLHL35^ENSG00000149243.16" ; exon_id "ENSE00001470101.3" ; exon_number 1 ; gene_id "IGH-@-ext--KLHL35^KLHL35^ENSG00000149243.16" ; gene_name KLHL35 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133573.3" ; havana_transcript "OTTHUMT00000257675.3" ; hgnc_id "HGNC:26597" ; level 2 ; orig_coord_info "chr11,75429749,75429969,-" ; protein_id "ENSP00000365469.4" ; tag CAGE_supported_TSS basic ; transcript_id "IGH-@-ext--KLHL35^ENST00000376292.8" ; transcript_name "KLHL35-201" ; transcript_support_level 1 ; transcript_type protein_coding
IGH-@-ext--KLHL35 HAVANA mRNA 1296942 1304039 . + . FI_gene_label "KLHL35^ENSG00000149243.16" ; ID "IGH-@-ext--KLHL35^ENST00000376292.8" ; Parent "IGH-@-ext--KLHL35^KLHL35^ENSG00000149243.16" ; exon_id "ENSE00001470101.3" ; exon_number 1 ; gene_id "IGH-@-ext--KLHL35^KLHL35^ENSG00000149243.16" ; gene_name KLHL35 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133573.3" ; havana_transcript "OTTHUMT00000257675.3" ; hgnc_id "HGNC:26597" ; level 2 ; orig_coord_info "chr11,75429749,75429969,-" ; protein_id "ENSP00000365469.4" ; tag CAGE_supported_TSS basic ; transcript_id "IGH-@-ext--KLHL35^ENST00000376292.8" ; transcript_name "KLHL35-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IGL-@-ext--MYO1E HAVANA gene 896102 932593 . + . FI_gene_label "MYO1E^ENSG00000157483.9" ; ID "IGL-@-ext--MYO1E^MYO1E^ENSG00000157483.9" ; ccdsid "CCDS32254.1" ; exon_id "ENSE00002548049.2" ; exon_number 1 ; gene_id "IGL-@-ext--MYO1E^MYO1E^ENSG00000157483.9" ; gene_name MYO1E ; gene_type protein_coding ; havana_gene "OTTHUMG00000171944.4" ; havana_transcript "OTTHUMT00000416024.3" ; hgnc_id "HGNC:7599" ; level 2 ; orig_coord_info "chr15,59372498,59372500,-" ; protein_id "ENSP00000288235.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IGL-@-ext--MYO1E^ENST00000288235.9" ; transcript_name "MYO1E-201" ; transcript_support_level 1 ; transcript_type protein_coding
IGL-@-ext--MYO1E HAVANA mRNA 896102 932593 . + . FI_gene_label "MYO1E^ENSG00000157483.9" ; ID "IGL-@-ext--MYO1E^ENST00000288235.9" ; Parent "IGL-@-ext--MYO1E^MYO1E^ENSG00000157483.9" ; ccdsid "CCDS32254.1" ; exon_id "ENSE00002548049.2" ; exon_number 1 ; gene_id "IGL-@-ext--MYO1E^MYO1E^ENSG00000157483.9" ; gene_name MYO1E ; gene_type protein_coding ; havana_gene "OTTHUMG00000171944.4" ; havana_transcript "OTTHUMT00000416024.3" ; hgnc_id "HGNC:7599" ; level 2 ; orig_coord_info "chr15,59372498,59372500,-" ; protein_id "ENSP00000288235.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IGL-@-ext--MYO1E^ENST00000288235.9" ; transcript_name "MYO1E-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KAT6A--AC083973.1 HAVANA gene 1008 38830 . + . FI_gene_label "KAT6A^ENSG00000083168.11" ; ID "KAT6A--AC083973.1^KAT6A^ENSG00000083168.11" ; ccdsid "CCDS6124.1" ; exon_id "ENSE00002107560.1" ; exon_number 2 ; gene_id "KAT6A--AC083973.1^KAT6A^ENSG00000083168.11" ; gene_name KAT6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150453.6" ; havana_transcript "OTTHUMT00000318160.3" ; hgnc_id "HGNC:13013" ; level 2 ; orig_coord_info "chr8,42048378,42048977,-" ; protein_id "ENSP00000265713.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "KAT6A--AC083973.1^ENST00000265713.8" ; transcript_name "KAT6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
KAT6A--AC083973.1 HAVANA mRNA 1008 38830 . + . FI_gene_label "KAT6A^ENSG00000083168.11" ; ID "KAT6A--AC083973.1^ENST00000265713.8" ; Parent "KAT6A--AC083973.1^KAT6A^ENSG00000083168.11" ; ccdsid "CCDS6124.1" ; exon_id "ENSE00002107560.1" ; exon_number 2 ; gene_id "KAT6A--AC083973.1^KAT6A^ENSG00000083168.11" ; gene_name KAT6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150453.6" ; havana_transcript "OTTHUMT00000318160.3" ; hgnc_id "HGNC:13013" ; level 2 ; orig_coord_info "chr8,42048378,42048977,-" ; protein_id "ENSP00000265713.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "KAT6A--AC083973.1^ENST00000265713.8" ; transcript_name "KAT6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC02614--CYP4F8 HAVANA gene 26958 37036 . + . FI_gene_label "CYP4F8^ENSG00000186526.13" ; ID "LINC02614--CYP4F8^CYP4F8^ENSG00000186526.13" ; exon_id "ENSE00003712741.1" ; exon_number 2 ; gene_id "LINC02614--CYP4F8^CYP4F8^ENSG00000186526.13" ; gene_name CYP4F8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182386.7" ; havana_transcript "OTTHUMT00000460899.2" ; hgnc_id "HGNC:2648" ; level 2 ; orig_coord_info "chr19,15615617,15615814,+" ; protein_id "ENSP00000479430.1" ; tag CAGE_supported_TSS ; transcript_id "LINC02614--CYP4F8^ENST00000325723.10" ; transcript_name "CYP4F8-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
LINC02614--CYP4F8 HAVANA mRNA 26958 37036 . + . FI_gene_label "CYP4F8^ENSG00000186526.13" ; ID "LINC02614--CYP4F8^ENST00000325723.10" ; Parent "LINC02614--CYP4F8^CYP4F8^ENSG00000186526.13" ; exon_id "ENSE00003712741.1" ; exon_number 2 ; gene_id "LINC02614--CYP4F8^CYP4F8^ENSG00000186526.13" ; gene_name CYP4F8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182386.7" ; havana_transcript "OTTHUMT00000460899.2" ; hgnc_id "HGNC:2648" ; level 2 ; orig_coord_info "chr19,15615617,15615814,+" ; protein_id "ENSP00000479430.1" ; tag CAGE_supported_TSS ; transcript_id "LINC02614--CYP4F8^ENST00000325723.10" ; transcript_name "CYP4F8-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
LUC7L3--LINC01982 HAVANA gene 1039 17722 . + . FI_gene_label "LUC7L3^ENSG00000108848.16" ; ID "LUC7L3--LINC01982^LUC7L3^ENSG00000108848.16" ; ccdsid "CCDS11573.1" ; exon_id "ENSE00001018561.1" ; exon_number 1 ; gene_id "LUC7L3--LINC01982^LUC7L3^ENSG00000108848.16" ; gene_name LUC7L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162257.13" ; havana_transcript "OTTHUMT00000368206.1" ; hgnc_id "HGNC:24309" ; level 2 ; orig_coord_info "chr17,50719733,50719831,+" ; protein_id "ENSP00000240304.1" ; tag alternative_3_UTR basic appris_principal_1 CCDS ; transcript_id "LUC7L3--LINC01982^ENST00000240304.5" ; transcript_name "LUC7L3-201" ; transcript_support_level 2 ; transcript_type protein_coding
LUC7L3--LINC01982 HAVANA mRNA 1039 17722 . + . FI_gene_label "LUC7L3^ENSG00000108848.16" ; ID "LUC7L3--LINC01982^ENST00000240304.5" ; Parent "LUC7L3--LINC01982^LUC7L3^ENSG00000108848.16" ; ccdsid "CCDS11573.1" ; exon_id "ENSE00001018561.1" ; exon_number 1 ; gene_id "LUC7L3--LINC01982^LUC7L3^ENSG00000108848.16" ; gene_name LUC7L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162257.13" ; havana_transcript "OTTHUMT00000368206.1" ; hgnc_id "HGNC:24309" ; level 2 ; orig_coord_info "chr17,50719733,50719831,+" ; protein_id "ENSP00000240304.1" ; tag alternative_3_UTR basic appris_principal_1 CCDS ; transcript_id "LUC7L3--LINC01982^ENST00000240304.5" ; transcript_name "LUC7L3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MOB1A--DCTN1 HAVANA gene 21060 39224 . + . FI_gene_label "DCTN1^ENSG00000204843.13" ; ID "MOB1A--DCTN1^DCTN1^ENSG00000204843.13" ; exon_id "ENSE00001940242.1" ; exon_number 1 ; gene_id "MOB1A--DCTN1^DCTN1^ENSG00000204843.13" ; gene_name DCTN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129963.31" ; hgnc_id "HGNC:2711" ; level 2 ; orig_coord_info "chr2,74380005,74380037,-" ; protein_id "ENSP00000354791.4" ; tag RNA_Seq_supported_only basic ; transcript_id "MOB1A--DCTN1^ENST00000361874.8" ; transcript_name "DCTN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MOB1A--DCTN1 HAVANA mRNA 21060 39224 . + . FI_gene_label "DCTN1^ENSG00000204843.13" ; ID "MOB1A--DCTN1^ENST00000361874.8" ; Parent "MOB1A--DCTN1^DCTN1^ENSG00000204843.13" ; exon_id "ENSE00001940242.1" ; exon_number 1 ; gene_id "MOB1A--DCTN1^DCTN1^ENSG00000204843.13" ; gene_name DCTN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129963.31" ; hgnc_id "HGNC:2711" ; level 2 ; orig_coord_info "chr2,74380005,74380037,-" ; protein_id "ENSP00000354791.4" ; tag RNA_Seq_supported_only basic ; transcript_id "MOB1A--DCTN1^ENST00000361874.8" ; transcript_name "DCTN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MOB1A--DCTN1 HAVANA gene 1020 12786 . + . FI_gene_label "MOB1A^ENSG00000114978.18" ; ID "MOB1A--DCTN1^MOB1A^ENSG00000114978.18" ; ccdsid "CCDS46340.1" ; exon_id "ENSE00003530028.2" ; exon_number 1 ; gene_id "MOB1A--DCTN1^MOB1A^ENSG00000114978.18" ; gene_name MOB1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000152833.3" ; havana_transcript "OTTHUMT00000328200.3" ; hgnc_id "HGNC:16015" ; level 2 ; orig_coord_info "chr2,74178661,74178674,-" ; protein_id "ENSP00000379364.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MOB1A--DCTN1^ENST00000396049.5" ; transcript_name "MOB1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
MOB1A--DCTN1 HAVANA mRNA 1020 12786 . + . FI_gene_label "MOB1A^ENSG00000114978.18" ; ID "MOB1A--DCTN1^ENST00000396049.5" ; Parent "MOB1A--DCTN1^MOB1A^ENSG00000114978.18" ; ccdsid "CCDS46340.1" ; exon_id "ENSE00003530028.2" ; exon_number 1 ; gene_id "MOB1A--DCTN1^MOB1A^ENSG00000114978.18" ; gene_name MOB1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000152833.3" ; havana_transcript "OTTHUMT00000328200.3" ; hgnc_id "HGNC:16015" ; level 2 ; orig_coord_info "chr2,74178661,74178674,-" ; protein_id "ENSP00000379364.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MOB1A--DCTN1^ENST00000396049.5" ; transcript_name "MOB1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MRNIP--RUFY1 HAVANA gene 3451 14783 . + . FI_gene_label "MRNIP^ENSG00000161010.15" ; ID "MRNIP--RUFY1^MRNIP^ENSG00000161010.15" ; ccdsid "CCDS34319.1" ; exon_id "ENSE00002119961.1" ; exon_number 1 ; gene_id "MRNIP--RUFY1^MRNIP^ENSG00000161010.15" ; gene_name MRNIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000163490.8" ; havana_transcript "OTTHUMT00000373760.3" ; hgnc_id "HGNC:30817" ; level 2 ; orig_coord_info "chr5,179858731,179858796,-" ; protein_id "ENSP00000292586.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MRNIP--RUFY1^ENST00000292586.11" ; transcript_name "MRNIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
MRNIP--RUFY1 HAVANA mRNA 3451 14783 . + . FI_gene_label "MRNIP^ENSG00000161010.15" ; ID "MRNIP--RUFY1^ENST00000292586.11" ; Parent "MRNIP--RUFY1^MRNIP^ENSG00000161010.15" ; ccdsid "CCDS34319.1" ; exon_id "ENSE00002119961.1" ; exon_number 1 ; gene_id "MRNIP--RUFY1^MRNIP^ENSG00000161010.15" ; gene_name MRNIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000163490.8" ; havana_transcript "OTTHUMT00000373760.3" ; hgnc_id "HGNC:30817" ; level 2 ; orig_coord_info "chr5,179858731,179858796,-" ; protein_id "ENSP00000292586.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MRNIP--RUFY1^ENST00000292586.11" ; transcript_name "MRNIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MRNIP--RUFY1 HAVANA gene 19927 44811 . + . FI_gene_label "RUFY1^ENSG00000176783.15" ; ID "MRNIP--RUFY1^RUFY1^ENSG00000176783.15" ; ccdsid "CCDS4445.2" ; exon_id "ENSE00001372451.4" ; exon_number 1 ; gene_id "MRNIP--RUFY1^RUFY1^ENSG00000176783.15" ; gene_name RUFY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130913.11" ; havana_transcript "OTTHUMT00000253505.3" ; hgnc_id "HGNC:19760" ; level 2 ; orig_coord_info "chr5,179550570,179550879,+" ; protein_id "ENSP00000325594.4" ; tag basic MANE_Select CCDS ; transcript_id "MRNIP--RUFY1^ENST00000319449.9" ; transcript_name "RUFY1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MRNIP--RUFY1 HAVANA mRNA 19927 44811 . + . FI_gene_label "RUFY1^ENSG00000176783.15" ; ID "MRNIP--RUFY1^ENST00000319449.9" ; Parent "MRNIP--RUFY1^RUFY1^ENSG00000176783.15" ; ccdsid "CCDS4445.2" ; exon_id "ENSE00001372451.4" ; exon_number 1 ; gene_id "MRNIP--RUFY1^RUFY1^ENSG00000176783.15" ; gene_name RUFY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130913.11" ; havana_transcript "OTTHUMT00000253505.3" ; hgnc_id "HGNC:19760" ; level 2 ; orig_coord_info "chr5,179550570,179550879,+" ; protein_id "ENSP00000325594.4" ; tag basic MANE_Select CCDS ; transcript_id "MRNIP--RUFY1^ENST00000319449.9" ; transcript_name "RUFY1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MYO5B--ACAA2 HAVANA gene 1001 50773 . + . FI_gene_label "MYO5B^ENSG00000167306.20" ; ID "MYO5B--ACAA2^MYO5B^ENSG00000167306.20" ; ccdsid "CCDS42436.1" ; exon_id "ENSE00002302584.3" ; exon_number 1 ; gene_id "MYO5B--ACAA2^MYO5B^ENSG00000167306.20" ; gene_name MYO5B ; gene_type protein_coding ; havana_gene "OTTHUMG00000179843.5" ; havana_transcript "OTTHUMT00000448515.3" ; hgnc_id "HGNC:7603" ; level 2 ; orig_coord_info "chr18,50194767,50194793,-" ; protein_id "ENSP00000285039.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYO5B--ACAA2^ENST00000285039.12" ; transcript_name "MYO5B-201" ; transcript_support_level 1 ; transcript_type protein_coding
MYO5B--ACAA2 HAVANA mRNA 1001 50773 . + . FI_gene_label "MYO5B^ENSG00000167306.20" ; ID "MYO5B--ACAA2^ENST00000285039.12" ; Parent "MYO5B--ACAA2^MYO5B^ENSG00000167306.20" ; ccdsid "CCDS42436.1" ; exon_id "ENSE00002302584.3" ; exon_number 1 ; gene_id "MYO5B--ACAA2^MYO5B^ENSG00000167306.20" ; gene_name MYO5B ; gene_type protein_coding ; havana_gene "OTTHUMG00000179843.5" ; havana_transcript "OTTHUMT00000448515.3" ; hgnc_id "HGNC:7603" ; level 2 ; orig_coord_info "chr18,50194767,50194793,-" ; protein_id "ENSP00000285039.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYO5B--ACAA2^ENST00000285039.12" ; transcript_name "MYO5B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MYO5B--ACAA2 HAVANA gene 54194 68490 . + . FI_gene_label "ACAA2^ENSG00000167315.18" ; ID "MYO5B--ACAA2^ACAA2^ENSG00000167315.18" ; ccdsid "CCDS11939.1" ; exon_id "ENSE00001321121.10" ; exon_number 1 ; gene_id "MYO5B--ACAA2^ACAA2^ENSG00000167315.18" ; gene_name ACAA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132667.11" ; havana_transcript "OTTHUMT00000255921.4" ; hgnc_id "HGNC:83" ; level 2 ; orig_coord_info "chr18,49813469,49813484,-" ; protein_id "ENSP00000285093.8" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MYO5B--ACAA2^ENST00000285093.15" ; transcript_name "ACAA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MYO5B--ACAA2 HAVANA mRNA 54194 68490 . + . FI_gene_label "ACAA2^ENSG00000167315.18" ; ID "MYO5B--ACAA2^ENST00000285093.15" ; Parent "MYO5B--ACAA2^ACAA2^ENSG00000167315.18" ; ccdsid "CCDS11939.1" ; exon_id "ENSE00001321121.10" ; exon_number 1 ; gene_id "MYO5B--ACAA2^ACAA2^ENSG00000167315.18" ; gene_name ACAA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132667.11" ; havana_transcript "OTTHUMT00000255921.4" ; hgnc_id "HGNC:83" ; level 2 ; orig_coord_info "chr18,49813469,49813484,-" ; protein_id "ENSP00000285093.8" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MYO5B--ACAA2^ENST00000285093.15" ; transcript_name "ACAA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NME2--SPAG9 HAVANA gene 9835 52347 . + . FI_gene_label "SPAG9^ENSG00000008294.21" ; ID "NME2--SPAG9^SPAG9^ENSG00000008294.21" ; ccdsid "CCDS45740.1" ; exon_id "ENSE00003850676.1" ; exon_number 1 ; gene_id "NME2--SPAG9^SPAG9^ENSG00000008294.21" ; gene_name SPAG9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162316.7" ; havana_transcript "OTTHUMT00000368543.3" ; hgnc_id "HGNC:14524" ; level 2 ; orig_coord_info "chr17,51120354,51120656,-" ; protein_id "ENSP00000262013.7" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "NME2--SPAG9^ENST00000262013.12" ; transcript_name "SPAG9-201" ; transcript_support_level 1 ; transcript_type protein_coding
NME2--SPAG9 HAVANA mRNA 9835 52347 . + . FI_gene_label "SPAG9^ENSG00000008294.21" ; ID "NME2--SPAG9^ENST00000262013.12" ; Parent "NME2--SPAG9^SPAG9^ENSG00000008294.21" ; ccdsid "CCDS45740.1" ; exon_id "ENSE00003850676.1" ; exon_number 1 ; gene_id "NME2--SPAG9^SPAG9^ENSG00000008294.21" ; gene_name SPAG9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162316.7" ; havana_transcript "OTTHUMT00000368543.3" ; hgnc_id "HGNC:14524" ; level 2 ; orig_coord_info "chr17,51120354,51120656,-" ; protein_id "ENSP00000262013.7" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "NME2--SPAG9^ENST00000262013.12" ; transcript_name "SPAG9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NME2--SPAG9 HAVANA gene 1986 6834 . + . FI_gene_label "NME2^ENSG00000243678.12" ; ID "NME2--SPAG9^NME2^ENSG00000243678.12" ; ccdsid "CCDS74107.1" ; exon_id "ENSE00003721718.1" ; exon_number 2 ; gene_id "NME2--SPAG9^NME2^ENSG00000243678.12" ; gene_name NME2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154062.4" ; havana_transcript "OTTHUMT00000487784.1" ; hgnc_id "HGNC:7850" ; level 2 ; orig_coord_info "chr17,51166831,51166956,+" ; protein_id "ENSP00000376880.4" ; tag basic CCDS ; transcript_id "NME2--SPAG9^ENST00000393183.7" ; transcript_name "NME2-201" ; transcript_support_level 2 ; transcript_type protein_coding
NME2--SPAG9 HAVANA mRNA 1986 6834 . + . FI_gene_label "NME2^ENSG00000243678.12" ; ID "NME2--SPAG9^ENST00000393183.7" ; Parent "NME2--SPAG9^NME2^ENSG00000243678.12" ; ccdsid "CCDS74107.1" ; exon_id "ENSE00003721718.1" ; exon_number 2 ; gene_id "NME2--SPAG9^NME2^ENSG00000243678.12" ; gene_name NME2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154062.4" ; havana_transcript "OTTHUMT00000487784.1" ; hgnc_id "HGNC:7850" ; level 2 ; orig_coord_info "chr17,51166831,51166956,+" ; protein_id "ENSP00000376880.4" ; tag basic CCDS ; transcript_id "NME2--SPAG9^ENST00000393183.7" ; transcript_name "NME2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NUS1--AC114501.3 HAVANA gene 1001 9659 . + . FI_gene_label "NUS1^ENSG00000153989.8" ; ID "NUS1--AC114501.3^NUS1^ENSG00000153989.8" ; ccdsid "CCDS5118.1" ; exon_id "ENSE00001447272.4" ; exon_number 1 ; gene_id "NUS1--AC114501.3^NUS1^ENSG00000153989.8" ; gene_name NUS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015458.2" ; havana_transcript "OTTHUMT00000041989.2" ; hgnc_id "HGNC:21042" ; level 2 ; orig_coord_info "chr6,117675671,117676085,+" ; protein_id "ENSP00000357480.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NUS1--AC114501.3^ENST00000368494.4" ; transcript_name "NUS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NUS1--AC114501.3 HAVANA mRNA 1001 9659 . + . FI_gene_label "NUS1^ENSG00000153989.8" ; ID "NUS1--AC114501.3^ENST00000368494.4" ; Parent "NUS1--AC114501.3^NUS1^ENSG00000153989.8" ; ccdsid "CCDS5118.1" ; exon_id "ENSE00001447272.4" ; exon_number 1 ; gene_id "NUS1--AC114501.3^NUS1^ENSG00000153989.8" ; gene_name NUS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015458.2" ; havana_transcript "OTTHUMT00000041989.2" ; hgnc_id "HGNC:21042" ; level 2 ; orig_coord_info "chr6,117675671,117676085,+" ; protein_id "ENSP00000357480.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NUS1--AC114501.3^ENST00000368494.4" ; transcript_name "NUS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^ENST00000289272.3" ; Parent "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^ENST00000378126.4" ; Parent "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA10 HAVANA gene 6885 16338 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA10 HAVANA mRNA 6885 16338 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA3--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA10 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA10 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA10^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA11 HAVANA gene 6700 15505 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA11 HAVANA mRNA 6700 15505 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA3--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA11 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA11 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA11^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA12 HAVANA gene 6696 14588 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA12 HAVANA mRNA 6696 14588 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA3--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA12 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA12 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA12^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA8 HAVANA gene 9172 18352 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA8 HAVANA mRNA 9172 18352 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA3--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA8 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA8 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA8^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA9 HAVANA gene 6717 14444 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA9 HAVANA mRNA 6717 14444 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA3--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA9 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA9 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA9^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB6 HAVANA gene 6878 16477 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGB6 HAVANA mRNA 6878 16477 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA3--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB6 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGB6 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB6^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB7 HAVANA gene 6728 14657 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGB7 HAVANA mRNA 6728 14657 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA3--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB7 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGB7 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB7^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC3 HAVANA gene 6715 16901 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC3 HAVANA mRNA 6715 16901 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA3--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC3 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC3 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC3^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC4 HAVANA gene 6873 14669 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC4 HAVANA mRNA 6873 14669 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA3--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC4 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC4 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC4^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC5 HAVANA gene 6696 14721 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC5 HAVANA mRNA 6696 14721 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA3--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC5 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC5 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC5^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCMTD2--IKZF3 HAVANA gene 19608 29163 . + . FI_gene_label "IKZF3^ENSG00000161405.17" ; ID "PCMTD2--IKZF3^IKZF3^ENSG00000161405.17" ; exon_id "ENSE00002692875.1" ; exon_number 1 ; gene_id "PCMTD2--IKZF3^IKZF3^ENSG00000161405.17" ; gene_name IKZF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133250.5" ; havana_transcript "OTTHUMT00000257011.2" ; hgnc_id "HGNC:13178" ; level 2 ; orig_coord_info "chr17,39864120,39864126,-" ; protein_id "ENSP00000462791.1" ; transcript_id "PCMTD2--IKZF3^ENST00000293068.9" ; transcript_name "IKZF3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
PCMTD2--IKZF3 HAVANA mRNA 19608 29163 . + . FI_gene_label "IKZF3^ENSG00000161405.17" ; ID "PCMTD2--IKZF3^ENST00000293068.9" ; Parent "PCMTD2--IKZF3^IKZF3^ENSG00000161405.17" ; exon_id "ENSE00002692875.1" ; exon_number 1 ; gene_id "PCMTD2--IKZF3^IKZF3^ENSG00000161405.17" ; gene_name IKZF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133250.5" ; havana_transcript "OTTHUMT00000257011.2" ; hgnc_id "HGNC:13178" ; level 2 ; orig_coord_info "chr17,39864120,39864126,-" ; protein_id "ENSP00000462791.1" ; transcript_id "PCMTD2--IKZF3^ENST00000293068.9" ; transcript_name "IKZF3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
PCMTD2--IKZF3 ENSEMBL gene 1001 16483 . + . FI_gene_label "PCMTD2^ENSG00000203880.12" ; ID "PCMTD2--IKZF3^PCMTD2^ENSG00000203880.12" ; exon_id "ENSE00000856691.3" ; exon_number 2 ; gene_id "PCMTD2--IKZF3^PCMTD2^ENSG00000203880.12" ; gene_name PCMTD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033029.6" ; hgnc_id "HGNC:15882" ; level 3 ; orig_coord_info "chr20,64259966,64260272,+" ; protein_id "ENSP00000299468.7" ; tag basic ; transcript_id "PCMTD2--IKZF3^ENST00000299468.11" ; transcript_name "PCMTD2-202" ; transcript_support_level 5 ; transcript_type protein_coding
PCMTD2--IKZF3 ENSEMBL mRNA 1001 16483 . + . FI_gene_label "PCMTD2^ENSG00000203880.12" ; ID "PCMTD2--IKZF3^ENST00000299468.11" ; Parent "PCMTD2--IKZF3^PCMTD2^ENSG00000203880.12" ; exon_id "ENSE00000856691.3" ; exon_number 2 ; gene_id "PCMTD2--IKZF3^PCMTD2^ENSG00000203880.12" ; gene_name PCMTD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033029.6" ; hgnc_id "HGNC:15882" ; level 3 ; orig_coord_info "chr20,64259966,64260272,+" ; protein_id "ENSP00000299468.7" ; tag basic ; transcript_id "PCMTD2--IKZF3^ENST00000299468.11" ; transcript_name "PCMTD2-202" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PITPNC1--AC092969.1 ENSEMBL gene 1001 20422 . + . FI_gene_label "PITPNC1^ENSG00000154217.15" ; ID "PITPNC1--AC092969.1^PITPNC1^ENSG00000154217.15" ; exon_id "ENSE00001407094.2" ; exon_number 1 ; gene_id "PITPNC1--AC092969.1^PITPNC1^ENSG00000154217.15" ; gene_name PITPNC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179602.3" ; hgnc_id "HGNC:21045" ; level 3 ; orig_coord_info "chr17,67378155,67378202,+" ; protein_id "ENSP00000299954.10" ; tag basic appris_alternative_1 ; transcript_id "PITPNC1--AC092969.1^ENST00000299954.13" ; transcript_name "PITPNC1-201" ; transcript_support_level 5 ; transcript_type protein_coding
PITPNC1--AC092969.1 ENSEMBL mRNA 1001 20422 . + . FI_gene_label "PITPNC1^ENSG00000154217.15" ; ID "PITPNC1--AC092969.1^ENST00000299954.13" ; Parent "PITPNC1--AC092969.1^PITPNC1^ENSG00000154217.15" ; exon_id "ENSE00001407094.2" ; exon_number 1 ; gene_id "PITPNC1--AC092969.1^PITPNC1^ENSG00000154217.15" ; gene_name PITPNC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179602.3" ; hgnc_id "HGNC:21045" ; level 3 ; orig_coord_info "chr17,67378155,67378202,+" ; protein_id "ENSP00000299954.10" ; tag basic appris_alternative_1 ; transcript_id "PITPNC1--AC092969.1^ENST00000299954.13" ; transcript_name "PITPNC1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PRSS27--TPSB2 HAVANA gene 1328 8540 . + . FI_gene_label "PRSS27^ENSG00000172382.10" ; ID "PRSS27--TPSB2^PRSS27^ENSG00000172382.10" ; ccdsid "CCDS10476.1" ; exon_id "ENSE00001215985.4" ; exon_number 1 ; gene_id "PRSS27--TPSB2^PRSS27^ENSG00000172382.10" ; gene_name PRSS27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128929.3" ; havana_transcript "OTTHUMT00000250908.2" ; hgnc_id "HGNC:15475" ; level 2 ; orig_coord_info "chr16,2720115,2720160,-" ; protein_id "ENSP00000306390.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRSS27--TPSB2^ENST00000302641.8" ; transcript_name "PRSS27-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRSS27--TPSB2 HAVANA mRNA 1328 8540 . + . FI_gene_label "PRSS27^ENSG00000172382.10" ; ID "PRSS27--TPSB2^ENST00000302641.8" ; Parent "PRSS27--TPSB2^PRSS27^ENSG00000172382.10" ; ccdsid "CCDS10476.1" ; exon_id "ENSE00001215985.4" ; exon_number 1 ; gene_id "PRSS27--TPSB2^PRSS27^ENSG00000172382.10" ; gene_name PRSS27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128929.3" ; havana_transcript "OTTHUMT00000250908.2" ; hgnc_id "HGNC:15475" ; level 2 ; orig_coord_info "chr16,2720115,2720160,-" ; protein_id "ENSP00000306390.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRSS27--TPSB2^ENST00000302641.8" ; transcript_name "PRSS27-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRSS27--TPSB2 HAVANA gene 11544 13392 . + . FI_gene_label "TPSB2^ENSG00000197253.13" ; ID "PRSS27--TPSB2^TPSB2^ENSG00000197253.13" ; exon_id "ENSE00003747406.1" ; exon_number 2 ; gene_id "PRSS27--TPSB2^TPSB2^ENSG00000197253.13" ; gene_name TPSB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155926.4" ; havana_transcript "OTTHUMT00000342363.2" ; hgnc_id "HGNC:14120" ; level 2 ; orig_coord_info "chr16,1229891,1229951,-" ; protein_id "ENSP00000482743.1" ; tag basic MANE_Select appris_principal_4 ; transcript_id "PRSS27--TPSB2^ENST00000606293.5" ; transcript_name "TPSB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRSS27--TPSB2 HAVANA mRNA 11544 13392 . + . FI_gene_label "TPSB2^ENSG00000197253.13" ; ID "PRSS27--TPSB2^ENST00000606293.5" ; Parent "PRSS27--TPSB2^TPSB2^ENSG00000197253.13" ; exon_id "ENSE00003747406.1" ; exon_number 2 ; gene_id "PRSS27--TPSB2^TPSB2^ENSG00000197253.13" ; gene_name TPSB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155926.4" ; havana_transcript "OTTHUMT00000342363.2" ; hgnc_id "HGNC:14120" ; level 2 ; orig_coord_info "chr16,1229891,1229951,-" ; protein_id "ENSP00000482743.1" ; tag basic MANE_Select appris_principal_4 ; transcript_id "PRSS27--TPSB2^ENST00000606293.5" ; transcript_name "TPSB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PXYLP1--AC092925.1 HAVANA gene 2120 19354 . + . FI_gene_label "PXYLP1^ENSG00000155893.13" ; ID "PXYLP1--AC092925.1^PXYLP1^ENSG00000155893.13" ; ccdsid "CCDS3116.1" ; exon_id "ENSE00003480344.1" ; exon_number 2 ; gene_id "PXYLP1--AC092925.1^PXYLP1^ENSG00000155893.13" ; gene_name PXYLP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160171.6" ; havana_transcript "OTTHUMT00000359533.4" ; hgnc_id "HGNC:26303" ; level 2 ; orig_coord_info "chr3,141260176,141260254,+" ; protein_id "ENSP00000286353.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PXYLP1--AC092925.1^ENST00000286353.9" ; transcript_name "PXYLP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PXYLP1--AC092925.1 HAVANA mRNA 2120 19354 . + . FI_gene_label "PXYLP1^ENSG00000155893.13" ; ID "PXYLP1--AC092925.1^ENST00000286353.9" ; Parent "PXYLP1--AC092925.1^PXYLP1^ENSG00000155893.13" ; ccdsid "CCDS3116.1" ; exon_id "ENSE00003480344.1" ; exon_number 2 ; gene_id "PXYLP1--AC092925.1^PXYLP1^ENSG00000155893.13" ; gene_name PXYLP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160171.6" ; havana_transcript "OTTHUMT00000359533.4" ; hgnc_id "HGNC:26303" ; level 2 ; orig_coord_info "chr3,141260176,141260254,+" ; protein_id "ENSP00000286353.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PXYLP1--AC092925.1^ENST00000286353.9" ; transcript_name "PXYLP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PXYLP1--NPM1P28 HAVANA gene 2120 19354 . + . FI_gene_label "PXYLP1^ENSG00000155893.13" ; ID "PXYLP1--NPM1P28^PXYLP1^ENSG00000155893.13" ; ccdsid "CCDS3116.1" ; exon_id "ENSE00003480344.1" ; exon_number 2 ; gene_id "PXYLP1--NPM1P28^PXYLP1^ENSG00000155893.13" ; gene_name PXYLP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160171.6" ; havana_transcript "OTTHUMT00000359533.4" ; hgnc_id "HGNC:26303" ; level 2 ; orig_coord_info "chr3,141260176,141260254,+" ; protein_id "ENSP00000286353.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PXYLP1--NPM1P28^ENST00000286353.9" ; transcript_name "PXYLP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PXYLP1--NPM1P28 HAVANA mRNA 2120 19354 . + . FI_gene_label "PXYLP1^ENSG00000155893.13" ; ID "PXYLP1--NPM1P28^ENST00000286353.9" ; Parent "PXYLP1--NPM1P28^PXYLP1^ENSG00000155893.13" ; ccdsid "CCDS3116.1" ; exon_id "ENSE00003480344.1" ; exon_number 2 ; gene_id "PXYLP1--NPM1P28^PXYLP1^ENSG00000155893.13" ; gene_name PXYLP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160171.6" ; havana_transcript "OTTHUMT00000359533.4" ; hgnc_id "HGNC:26303" ; level 2 ; orig_coord_info "chr3,141260176,141260254,+" ; protein_id "ENSP00000286353.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PXYLP1--NPM1P28^ENST00000286353.9" ; transcript_name "PXYLP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNU6-394P--EDA2R HAVANA gene 5422 10091 . + . FI_gene_label "EDA2R^ENSG00000131080.15" ; ID "RNU6-394P--EDA2R^EDA2R^ENSG00000131080.15" ; ccdsid "CCDS56603.1" ; exon_id "ENSE00001756655.1" ; exon_number 1 ; gene_id "RNU6-394P--EDA2R^EDA2R^ENSG00000131080.15" ; gene_name EDA2R ; gene_type protein_coding ; havana_gene "OTTHUMG00000021736.3" ; havana_transcript "OTTHUMT00000057003.2" ; hgnc_id "HGNC:17756" ; level 2 ; orig_coord_info "chrX,66615934,66616020,-" ; protein_id "ENSP00000253392.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "RNU6-394P--EDA2R^ENST00000253392.5" ; transcript_name "EDA2R-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNU6-394P--EDA2R HAVANA mRNA 5422 10091 . + . FI_gene_label "EDA2R^ENSG00000131080.15" ; ID "RNU6-394P--EDA2R^ENST00000253392.5" ; Parent "RNU6-394P--EDA2R^EDA2R^ENSG00000131080.15" ; ccdsid "CCDS56603.1" ; exon_id "ENSE00001756655.1" ; exon_number 1 ; gene_id "RNU6-394P--EDA2R^EDA2R^ENSG00000131080.15" ; gene_name EDA2R ; gene_type protein_coding ; havana_gene "OTTHUMG00000021736.3" ; havana_transcript "OTTHUMT00000057003.2" ; hgnc_id "HGNC:17756" ; level 2 ; orig_coord_info "chrX,66615934,66616020,-" ; protein_id "ENSP00000253392.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "RNU6-394P--EDA2R^ENST00000253392.5" ; transcript_name "EDA2R-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC38A1--SLC38A2 HAVANA gene 29750 41678 . + . FI_gene_label "SLC38A2^ENSG00000134294.14" ; ID "SLC38A1--SLC38A2^SLC38A2^ENSG00000134294.14" ; ccdsid "CCDS8749.1" ; exon_id "ENSE00003459885.1" ; exon_number 2 ; gene_id "SLC38A1--SLC38A2^SLC38A2^ENSG00000134294.14" ; gene_name SLC38A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169471.2" ; havana_transcript "OTTHUMT00000404226.2" ; hgnc_id "HGNC:13448" ; level 2 ; orig_coord_info "chr12,46371178,46371293,-" ; protein_id "ENSP00000256689.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC38A1--SLC38A2^ENST00000256689.10" ; transcript_name "SLC38A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC38A1--SLC38A2 HAVANA mRNA 29750 41678 . + . FI_gene_label "SLC38A2^ENSG00000134294.14" ; ID "SLC38A1--SLC38A2^ENST00000256689.10" ; Parent "SLC38A1--SLC38A2^SLC38A2^ENSG00000134294.14" ; ccdsid "CCDS8749.1" ; exon_id "ENSE00003459885.1" ; exon_number 2 ; gene_id "SLC38A1--SLC38A2^SLC38A2^ENSG00000134294.14" ; gene_name SLC38A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169471.2" ; havana_transcript "OTTHUMT00000404226.2" ; hgnc_id "HGNC:13448" ; level 2 ; orig_coord_info "chr12,46371178,46371293,-" ; protein_id "ENSP00000256689.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC38A1--SLC38A2^ENST00000256689.10" ; transcript_name "SLC38A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC38A1--SLC38A2 HAVANA gene 1975 26749 . + . FI_gene_label "SLC38A1^ENSG00000111371.16" ; ID "SLC38A1--SLC38A2^SLC38A1^ENSG00000111371.16" ; ccdsid "CCDS41774.1" ; exon_id "ENSE00000914027.4" ; exon_number 3 ; gene_id "SLC38A1--SLC38A2^SLC38A1^ENSG00000111371.16" ; gene_name SLC38A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169470.4" ; havana_transcript "OTTHUMT00000404218.3" ; hgnc_id "HGNC:13447" ; level 2 ; orig_coord_info "chr12,46239679,46239800,-" ; protein_id "ENSP00000381634.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC38A1--SLC38A2^ENST00000398637.10" ; transcript_name "SLC38A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC38A1--SLC38A2 HAVANA mRNA 1975 26749 . + . FI_gene_label "SLC38A1^ENSG00000111371.16" ; ID "SLC38A1--SLC38A2^ENST00000398637.10" ; Parent "SLC38A1--SLC38A2^SLC38A1^ENSG00000111371.16" ; ccdsid "CCDS41774.1" ; exon_id "ENSE00000914027.4" ; exon_number 3 ; gene_id "SLC38A1--SLC38A2^SLC38A1^ENSG00000111371.16" ; gene_name SLC38A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169470.4" ; havana_transcript "OTTHUMT00000404218.3" ; hgnc_id "HGNC:13447" ; level 2 ; orig_coord_info "chr12,46239679,46239800,-" ; protein_id "ENSP00000381634.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC38A1--SLC38A2^ENST00000398637.10" ; transcript_name "SLC38A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMG6--TSR1 HAVANA gene 1001 36536 . + . FI_gene_label "SMG6^ENSG00000070366.14" ; ID "SMG6--TSR1^SMG6^ENSG00000070366.14" ; ccdsid "CCDS11016.1" ; exon_id "ENSE00001133693.6" ; exon_number 1 ; gene_id "SMG6--TSR1^SMG6^ENSG00000070366.14" ; gene_name SMG6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177578.15" ; havana_transcript "OTTHUMT00000437826.4" ; hgnc_id "HGNC:17809" ; level 2 ; orig_coord_info "chr17,2303633,2303720,-" ; protein_id "ENSP00000263073.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMG6--TSR1^ENST00000263073.11" ; transcript_name "SMG6-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMG6--TSR1 HAVANA mRNA 1001 36536 . + . FI_gene_label "SMG6^ENSG00000070366.14" ; ID "SMG6--TSR1^ENST00000263073.11" ; Parent "SMG6--TSR1^SMG6^ENSG00000070366.14" ; ccdsid "CCDS11016.1" ; exon_id "ENSE00001133693.6" ; exon_number 1 ; gene_id "SMG6--TSR1^SMG6^ENSG00000070366.14" ; gene_name SMG6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177578.15" ; havana_transcript "OTTHUMT00000437826.4" ; hgnc_id "HGNC:17809" ; level 2 ; orig_coord_info "chr17,2303633,2303720,-" ; protein_id "ENSP00000263073.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMG6--TSR1^ENST00000263073.11" ; transcript_name "SMG6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMG6--TSR1 HAVANA gene 39741 50782 . + . FI_gene_label "TSR1^ENSG00000167721.11" ; ID "SMG6--TSR1^TSR1^ENSG00000167721.11" ; ccdsid "CCDS32525.1" ; exon_id "ENSE00002683031.1" ; exon_number 1 ; gene_id "SMG6--TSR1^TSR1^ENSG00000167721.11" ; gene_name TSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177636.7" ; havana_transcript "OTTHUMT00000438180.3" ; hgnc_id "HGNC:25542" ; level 2 ; orig_coord_info "chr17,2336331,2336427,-" ; protein_id "ENSP00000301364.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMG6--TSR1^ENST00000301364.10" ; transcript_name "TSR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMG6--TSR1 HAVANA mRNA 39741 50782 . + . FI_gene_label "TSR1^ENSG00000167721.11" ; ID "SMG6--TSR1^ENST00000301364.10" ; Parent "SMG6--TSR1^TSR1^ENSG00000167721.11" ; ccdsid "CCDS32525.1" ; exon_id "ENSE00002683031.1" ; exon_number 1 ; gene_id "SMG6--TSR1^TSR1^ENSG00000167721.11" ; gene_name TSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177636.7" ; havana_transcript "OTTHUMT00000438180.3" ; hgnc_id "HGNC:25542" ; level 2 ; orig_coord_info "chr17,2336331,2336427,-" ; protein_id "ENSP00000301364.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMG6--TSR1^ENST00000301364.10" ; transcript_name "TSR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBC1D16--GAA HAVANA gene 27214 41456 . + . FI_gene_label "GAA^ENSG00000171298.13" ; ID "TBC1D16--GAA^GAA^ENSG00000171298.13" ; ccdsid "CCDS32760.1" ; exon_id "ENSE00001291648.2" ; exon_number 2 ; gene_id "TBC1D16--GAA^GAA^ENSG00000171298.13" ; gene_name GAA ; gene_type protein_coding ; havana_gene "OTTHUMG00000177537.3" ; havana_transcript "OTTHUMT00000437441.2" ; hgnc_id "HGNC:4065" ; level 2 ; orig_coord_info "chr17,80104587,80105132,+" ; protein_id "ENSP00000305692.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBC1D16--GAA^ENST00000302262.8" ; transcript_name "GAA-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBC1D16--GAA HAVANA mRNA 27214 41456 . + . FI_gene_label "GAA^ENSG00000171298.13" ; ID "TBC1D16--GAA^ENST00000302262.8" ; Parent "TBC1D16--GAA^GAA^ENSG00000171298.13" ; ccdsid "CCDS32760.1" ; exon_id "ENSE00001291648.2" ; exon_number 2 ; gene_id "TBC1D16--GAA^GAA^ENSG00000171298.13" ; gene_name GAA ; gene_type protein_coding ; havana_gene "OTTHUMG00000177537.3" ; havana_transcript "OTTHUMT00000437441.2" ; hgnc_id "HGNC:4065" ; level 2 ; orig_coord_info "chr17,80104587,80105132,+" ; protein_id "ENSP00000305692.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBC1D16--GAA^ENST00000302262.8" ; transcript_name "GAA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBC1D16--GAA HAVANA gene 1001 24188 . + . FI_gene_label "TBC1D16^ENSG00000167291.16" ; ID "TBC1D16--GAA^TBC1D16^ENSG00000167291.16" ; ccdsid "CCDS11766.1" ; exon_id "ENSE00001382516.1" ; exon_number 2 ; gene_id "TBC1D16--GAA^TBC1D16^ENSG00000167291.16" ; gene_name TBC1D16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177489.5" ; havana_transcript "OTTHUMT00000437145.2" ; hgnc_id "HGNC:28356" ; level 2 ; orig_coord_info "chr17,80013367,80013547,-" ; protein_id "ENSP00000309794.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TBC1D16--GAA^ENST00000310924.7" ; transcript_name "TBC1D16-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBC1D16--GAA HAVANA mRNA 1001 24188 . + . FI_gene_label "TBC1D16^ENSG00000167291.16" ; ID "TBC1D16--GAA^ENST00000310924.7" ; Parent "TBC1D16--GAA^TBC1D16^ENSG00000167291.16" ; ccdsid "CCDS11766.1" ; exon_id "ENSE00001382516.1" ; exon_number 2 ; gene_id "TBC1D16--GAA^TBC1D16^ENSG00000167291.16" ; gene_name TBC1D16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177489.5" ; havana_transcript "OTTHUMT00000437145.2" ; hgnc_id "HGNC:28356" ; level 2 ; orig_coord_info "chr17,80013367,80013547,-" ; protein_id "ENSP00000309794.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TBC1D16--GAA^ENST00000310924.7" ; transcript_name "TBC1D16-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
THRA--FP671120.4 HAVANA gene 3096 18567 . + . FI_gene_label "THRA^ENSG00000126351.13" ; ID "THRA--FP671120.4^THRA^ENSG00000126351.13" ; ccdsid "CCDS11360.1" ; exon_id "ENSE00001254896.3" ; exon_number 2 ; gene_id "THRA--FP671120.4^THRA^ENSG00000126351.13" ; gene_name THRA ; gene_type protein_coding ; havana_gene "OTTHUMG00000133332.3" ; havana_transcript "OTTHUMT00000257160.2" ; hgnc_id "HGNC:11796" ; level 2 ; orig_coord_info "chr17,40074489,40074541,+" ; protein_id "ENSP00000264637.4" ; tag basic CCDS ; transcript_id "THRA--FP671120.4^ENST00000264637.8" ; transcript_name "THRA-201" ; transcript_support_level 1 ; transcript_type protein_coding
THRA--FP671120.4 HAVANA mRNA 3096 18567 . + . FI_gene_label "THRA^ENSG00000126351.13" ; ID "THRA--FP671120.4^ENST00000264637.8" ; Parent "THRA--FP671120.4^THRA^ENSG00000126351.13" ; ccdsid "CCDS11360.1" ; exon_id "ENSE00001254896.3" ; exon_number 2 ; gene_id "THRA--FP671120.4^THRA^ENSG00000126351.13" ; gene_name THRA ; gene_type protein_coding ; havana_gene "OTTHUMG00000133332.3" ; havana_transcript "OTTHUMT00000257160.2" ; hgnc_id "HGNC:11796" ; level 2 ; orig_coord_info "chr17,40074489,40074541,+" ; protein_id "ENSP00000264637.4" ; tag basic CCDS ; transcript_id "THRA--FP671120.4^ENST00000264637.8" ; transcript_name "THRA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^ENST00000427199.3" ; Parent "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^ENST00000456936.4" ; Parent "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF827--CYTIP HAVANA gene 47851 57278 . + . FI_gene_label "CYTIP^ENSG00000115165.10" ; ID "ZNF827--CYTIP^CYTIP^ENSG00000115165.10" ; ccdsid "CCDS2204.1" ; exon_id "ENSE00001957810.2" ; exon_number 1 ; gene_id "ZNF827--CYTIP^CYTIP^ENSG00000115165.10" ; gene_name CYTIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000154551.7" ; havana_transcript "OTTHUMT00000254926.2" ; hgnc_id "HGNC:9506" ; level 2 ; orig_coord_info "chr2,157443847,157444020,-" ; protein_id "ENSP00000264192.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF827--CYTIP^ENST00000264192.8" ; transcript_name "CYTIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF827--CYTIP HAVANA mRNA 47851 57278 . + . FI_gene_label "CYTIP^ENSG00000115165.10" ; ID "ZNF827--CYTIP^ENST00000264192.8" ; Parent "ZNF827--CYTIP^CYTIP^ENSG00000115165.10" ; ccdsid "CCDS2204.1" ; exon_id "ENSE00001957810.2" ; exon_number 1 ; gene_id "ZNF827--CYTIP^CYTIP^ENSG00000115165.10" ; gene_name CYTIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000154551.7" ; havana_transcript "OTTHUMT00000254926.2" ; hgnc_id "HGNC:9506" ; level 2 ; orig_coord_info "chr2,157443847,157444020,-" ; protein_id "ENSP00000264192.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF827--CYTIP^ENST00000264192.8" ; transcript_name "CYTIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF827--CYTIP HAVANA gene 1394 38008 . + . FI_gene_label "ZNF827^ENSG00000151612.18" ; ID "ZNF827--CYTIP^ZNF827^ENSG00000151612.18" ; ccdsid "CCDS34072.1" ; exon_id "ENSE00003893855.1" ; exon_number 1 ; gene_id "ZNF827--CYTIP^ZNF827^ENSG00000151612.18" ; gene_name ZNF827 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161362.10" ; havana_transcript "OTTHUMT00000364656.1" ; hgnc_id "HGNC:27193" ; level 2 ; orig_coord_info "chr4,145938365,145938407,-" ; protein_id "ENSP00000368761.4" ; tag basic CCDS ; transcript_id "ZNF827--CYTIP^ENST00000379448.9" ; transcript_name "ZNF827-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZNF827--CYTIP HAVANA mRNA 1394 38008 . + . FI_gene_label "ZNF827^ENSG00000151612.18" ; ID "ZNF827--CYTIP^ENST00000379448.9" ; Parent "ZNF827--CYTIP^ZNF827^ENSG00000151612.18" ; ccdsid "CCDS34072.1" ; exon_id "ENSE00003893855.1" ; exon_number 1 ; gene_id "ZNF827--CYTIP^ZNF827^ENSG00000151612.18" ; gene_name ZNF827 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161362.10" ; havana_transcript "OTTHUMT00000364656.1" ; hgnc_id "HGNC:27193" ; level 2 ; orig_coord_info "chr4,145938365,145938407,-" ; protein_id "ENSP00000368761.4" ; tag basic CCDS ; transcript_id "ZNF827--CYTIP^ENST00000379448.9" ; transcript_name "ZNF827-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ZNF827--FAM133DP HAVANA gene 1394 38008 . + . FI_gene_label "ZNF827^ENSG00000151612.18" ; ID "ZNF827--FAM133DP^ZNF827^ENSG00000151612.18" ; ccdsid "CCDS34072.1" ; exon_id "ENSE00003893855.1" ; exon_number 1 ; gene_id "ZNF827--FAM133DP^ZNF827^ENSG00000151612.18" ; gene_name ZNF827 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161362.10" ; havana_transcript "OTTHUMT00000364656.1" ; hgnc_id "HGNC:27193" ; level 2 ; orig_coord_info "chr4,145938365,145938407,-" ; protein_id "ENSP00000368761.4" ; tag basic CCDS ; transcript_id "ZNF827--FAM133DP^ENST00000379448.9" ; transcript_name "ZNF827-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZNF827--FAM133DP HAVANA mRNA 1394 38008 . + . FI_gene_label "ZNF827^ENSG00000151612.18" ; ID "ZNF827--FAM133DP^ENST00000379448.9" ; Parent "ZNF827--FAM133DP^ZNF827^ENSG00000151612.18" ; ccdsid "CCDS34072.1" ; exon_id "ENSE00003893855.1" ; exon_number 1 ; gene_id "ZNF827--FAM133DP^ZNF827^ENSG00000151612.18" ; gene_name ZNF827 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161362.10" ; havana_transcript "OTTHUMT00000364656.1" ; hgnc_id "HGNC:27193" ; level 2 ; orig_coord_info "chr4,145938365,145938407,-" ; protein_id "ENSP00000368761.4" ; tag basic CCDS ; transcript_id "ZNF827--FAM133DP^ENST00000379448.9" ; transcript_name "ZNF827-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ZPLD1--NFKBIZ HAVANA gene 13124 27257 . + . FI_gene_label "ZPLD1^ENSG00000170044.8" ; ID "ZPLD1--NFKBIZ^ZPLD1^ENSG00000170044.8" ; ccdsid "CCDS2947.1" ; exon_id "ENSE00001209486.3" ; exon_number 1 ; gene_id "ZPLD1--NFKBIZ^ZPLD1^ENSG00000170044.8" ; gene_name ZPLD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159229.5" ; havana_transcript "OTTHUMT00000354023.2" ; hgnc_id "HGNC:27022" ; level 2 ; orig_coord_info "chr3,102435115,102435154,+" ; protein_id "ENSP00000307801.1" ; tag basic CCDS ; transcript_id "ZPLD1--NFKBIZ^ENST00000306176.5" ; transcript_name "ZPLD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZPLD1--NFKBIZ HAVANA mRNA 13124 27257 . + . FI_gene_label "ZPLD1^ENSG00000170044.8" ; ID "ZPLD1--NFKBIZ^ENST00000306176.5" ; Parent "ZPLD1--NFKBIZ^ZPLD1^ENSG00000170044.8" ; ccdsid "CCDS2947.1" ; exon_id "ENSE00001209486.3" ; exon_number 1 ; gene_id "ZPLD1--NFKBIZ^ZPLD1^ENSG00000170044.8" ; gene_name ZPLD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159229.5" ; havana_transcript "OTTHUMT00000354023.2" ; hgnc_id "HGNC:27022" ; level 2 ; orig_coord_info "chr3,102435115,102435154,+" ; protein_id "ENSP00000307801.1" ; tag basic CCDS ; transcript_id "ZPLD1--NFKBIZ^ENST00000306176.5" ; transcript_name "ZPLD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZPLD1--NFKBIZ HAVANA gene 33150 41643 . + . FI_gene_label "NFKBIZ^ENSG00000144802.11" ; ID "ZPLD1--NFKBIZ^NFKBIZ^ENSG00000144802.11" ; exon_id "ENSE00001248779.5" ; exon_number 1 ; gene_id "ZPLD1--NFKBIZ^NFKBIZ^ENSG00000144802.11" ; gene_name NFKBIZ ; gene_type protein_coding ; havana_gene "OTTHUMG00000159194.18" ; havana_transcript "OTTHUMT00000353779.1" ; hgnc_id "HGNC:29805" ; level 2 ; orig_coord_info "chr3,101849629,101849917,+" ; protein_id "ENSP00000325593.5" ; tag basic appris_alternative_2 ; transcript_id "ZPLD1--NFKBIZ^ENST00000326151.9" ; transcript_name "NFKBIZ-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZPLD1--NFKBIZ HAVANA mRNA 33150 41643 . + . FI_gene_label "NFKBIZ^ENSG00000144802.11" ; ID "ZPLD1--NFKBIZ^ENST00000326151.9" ; Parent "ZPLD1--NFKBIZ^NFKBIZ^ENSG00000144802.11" ; exon_id "ENSE00001248779.5" ; exon_number 1 ; gene_id "ZPLD1--NFKBIZ^NFKBIZ^ENSG00000144802.11" ; gene_name NFKBIZ ; gene_type protein_coding ; havana_gene "OTTHUMG00000159194.18" ; havana_transcript "OTTHUMT00000353779.1" ; hgnc_id "HGNC:29805" ; level 2 ; orig_coord_info "chr3,101849629,101849917,+" ; protein_id "ENSP00000325593.5" ; tag basic appris_alternative_2 ; transcript_id "ZPLD1--NFKBIZ^ENST00000326151.9" ; transcript_name "NFKBIZ-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AL049641.1--EDA2R HAVANA gene 1001 2948 . + . FI_gene_label "AL049641.1^ENSG00000226280.2" ; ID "AL049641.1--EDA2R^AL049641.1^ENSG00000226280.2" ; exon_id "ENSE00001727019.1" ; exon_number 1 ; gene_id "AL049641.1--EDA2R^AL049641.1^ENSG00000226280.2" ; gene_name "AL049641.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000021737.2" ; havana_transcript "OTTHUMT00000057004.2" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chrX,67373573,67375520,+" ; tag basic ; transcript_id "AL049641.1--EDA2R^ENST00000441055.1" ; transcript_name "AL049641.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AL049641.1--EDA2R HAVANA RNA 1001 2948 . + . FI_gene_label "AL049641.1^ENSG00000226280.2" ; ID "AL049641.1--EDA2R^ENST00000441055.1" ; Parent "AL049641.1--EDA2R^AL049641.1^ENSG00000226280.2" ; exon_id "ENSE00001727019.1" ; exon_number 1 ; gene_id "AL049641.1--EDA2R^AL049641.1^ENSG00000226280.2" ; gene_name "AL049641.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000021737.2" ; havana_transcript "OTTHUMT00000057004.2" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chrX,67373573,67375520,+" ; tag basic ; transcript_id "AL049641.1--EDA2R^ENST00000441055.1" ; transcript_name "AL049641.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AL669831.1--SEPTIN14 HAVANA gene 2344 8334 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "AL669831.1--SEPTIN14^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "AL669831.1--SEPTIN14^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "AL669831.1--SEPTIN14^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AL669831.1--SEPTIN14 HAVANA RNA 2344 8334 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "AL669831.1--SEPTIN14^ENST00000428504.2" ; Parent "AL669831.1--SEPTIN14^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "AL669831.1--SEPTIN14^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "AL669831.1--SEPTIN14^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
BAIAP2--FP236383.3 HAVANA gene 31982 38577 . + . FI_gene_label "FP236383.3^ENSG00000280441.3" ; ID "BAIAP2--FP236383.3^FP236383.3^ENSG00000280441.3" ; exon_id "ENSE00003845623.1" ; exon_number 1 ; gene_id "BAIAP2--FP236383.3^FP236383.3^ENSG00000280441.3" ; gene_name "FP236383.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189419.3" ; havana_transcript "OTTHUMT00000479653.3" ; level 2 ; orig_coord_info "chr21,8380643,8380972,+" ; tag basic ; transcript_id "BAIAP2--FP236383.3^ENST00000623860.3" ; transcript_name "FP236383.3-201" ; transcript_support_level 2 ; transcript_type lncRNA
BAIAP2--FP236383.3 HAVANA RNA 31982 38577 . + . FI_gene_label "FP236383.3^ENSG00000280441.3" ; ID "BAIAP2--FP236383.3^ENST00000623860.3" ; Parent "BAIAP2--FP236383.3^FP236383.3^ENSG00000280441.3" ; exon_id "ENSE00003845623.1" ; exon_number 1 ; gene_id "BAIAP2--FP236383.3^FP236383.3^ENSG00000280441.3" ; gene_name "FP236383.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189419.3" ; havana_transcript "OTTHUMT00000479653.3" ; level 2 ; orig_coord_info "chr21,8380643,8380972,+" ; tag basic ; transcript_id "BAIAP2--FP236383.3^ENST00000623860.3" ; transcript_name "FP236383.3-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
BAIAP2--FP236383.6 HAVANA gene 31982 32314 . + . FI_gene_label "FP236383.6^ENSG00000286032.1" ; ID "BAIAP2--FP236383.6^FP236383.6^ENSG00000286032.1" ; exon_id "ENSE00003846747.1" ; exon_number 1 ; gene_id "BAIAP2--FP236383.6^FP236383.6^ENSG00000286032.1" ; gene_name "FP236383.6" ; gene_type TEC ; havana_gene "OTTHUMG00000193762.1" ; havana_transcript "OTTHUMT00000504496.1" ; level 2 ; orig_coord_info "chr21,8465254,8465586,+" ; tag basic ; transcript_id "BAIAP2--FP236383.6^ENST00000651130.1" ; transcript_name "FP236383.6-201" ; transcript_type TEC
BAIAP2--FP236383.6 HAVANA RNA 31982 32314 . + . FI_gene_label "FP236383.6^ENSG00000286032.1" ; ID "BAIAP2--FP236383.6^ENST00000651130.1" ; Parent "BAIAP2--FP236383.6^FP236383.6^ENSG00000286032.1" ; exon_id "ENSE00003846747.1" ; exon_number 1 ; gene_id "BAIAP2--FP236383.6^FP236383.6^ENSG00000286032.1" ; gene_name "FP236383.6" ; gene_type TEC ; havana_gene "OTTHUMG00000193762.1" ; havana_transcript "OTTHUMT00000504496.1" ; level 2 ; orig_coord_info "chr21,8465254,8465586,+" ; tag basic ; transcript_id "BAIAP2--FP236383.6^ENST00000651130.1" ; transcript_name "FP236383.6-201" ; transcript_type TEC
L1 and L2 created:
CRYZL2P--SEC16B HAVANA gene 1005 12289 . + . FI_gene_label "CRYZL2P^ENSG00000242193.11" ; ID "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; exon_id "ENSE00001918901.2" ; exon_number 1 ; gene_id "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; gene_name CRYZL2P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000154878.4" ; havana_transcript "OTTHUMT00000337460.2" ; hgnc_id "HGNC:52164" ; level 2 ; orig_coord_info "chr1,178037897,178037946,-" ; tag basic ; transcript_id "CRYZL2P--SEC16B^ENST00000462729.2" ; transcript_name "CRYZL2P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
CRYZL2P--SEC16B HAVANA RNA 1005 12289 . + . FI_gene_label "CRYZL2P^ENSG00000242193.11" ; ID "CRYZL2P--SEC16B^ENST00000462729.2" ; Parent "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; exon_id "ENSE00001918901.2" ; exon_number 1 ; gene_id "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; gene_name CRYZL2P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000154878.4" ; havana_transcript "OTTHUMT00000337460.2" ; hgnc_id "HGNC:52164" ; level 2 ; orig_coord_info "chr1,178037897,178037946,-" ; tag basic ; transcript_id "CRYZL2P--SEC16B^ENST00000462729.2" ; transcript_name "CRYZL2P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
ERBB2--FP236383.3 HAVANA gene 30170 36765 . + . FI_gene_label "FP236383.3^ENSG00000280441.3" ; ID "ERBB2--FP236383.3^FP236383.3^ENSG00000280441.3" ; exon_id "ENSE00003845623.1" ; exon_number 1 ; gene_id "ERBB2--FP236383.3^FP236383.3^ENSG00000280441.3" ; gene_name "FP236383.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189419.3" ; havana_transcript "OTTHUMT00000479653.3" ; level 2 ; orig_coord_info "chr21,8380643,8380972,+" ; tag basic ; transcript_id "ERBB2--FP236383.3^ENST00000623860.3" ; transcript_name "FP236383.3-201" ; transcript_support_level 2 ; transcript_type lncRNA
ERBB2--FP236383.3 HAVANA RNA 30170 36765 . + . FI_gene_label "FP236383.3^ENSG00000280441.3" ; ID "ERBB2--FP236383.3^ENST00000623860.3" ; Parent "ERBB2--FP236383.3^FP236383.3^ENSG00000280441.3" ; exon_id "ENSE00003845623.1" ; exon_number 1 ; gene_id "ERBB2--FP236383.3^FP236383.3^ENSG00000280441.3" ; gene_name "FP236383.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189419.3" ; havana_transcript "OTTHUMT00000479653.3" ; level 2 ; orig_coord_info "chr21,8380643,8380972,+" ; tag basic ; transcript_id "ERBB2--FP236383.3^ENST00000623860.3" ; transcript_name "FP236383.3-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
ERBB2--FP671120.4 HAVANA gene 30170 36743 . + . FI_gene_label "FP671120.4^ENSG00000278996.1" ; ID "ERBB2--FP671120.4^FP671120.4^ENSG00000278996.1" ; exon_id "ENSE00003755016.1" ; exon_number 1 ; gene_id "ERBB2--FP671120.4^FP671120.4^ENSG00000278996.1" ; gene_name "FP671120.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189417.1" ; havana_transcript "OTTHUMT00000479651.1" ; level 2 ; orig_coord_info "chr21,8197620,8197927,+" ; tag basic ; transcript_id "ERBB2--FP671120.4^ENST00000623664.1" ; transcript_name "FP671120.4-201" ; transcript_support_level 2 ; transcript_type lncRNA
ERBB2--FP671120.4 HAVANA RNA 30170 36743 . + . FI_gene_label "FP671120.4^ENSG00000278996.1" ; ID "ERBB2--FP671120.4^ENST00000623664.1" ; Parent "ERBB2--FP671120.4^FP671120.4^ENSG00000278996.1" ; exon_id "ENSE00003755016.1" ; exon_number 1 ; gene_id "ERBB2--FP671120.4^FP671120.4^ENSG00000278996.1" ; gene_name "FP671120.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189417.1" ; havana_transcript "OTTHUMT00000479651.1" ; level 2 ; orig_coord_info "chr21,8197620,8197927,+" ; tag basic ; transcript_id "ERBB2--FP671120.4^ENST00000623664.1" ; transcript_name "FP671120.4-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
FP236383.3--PPP1R1B HAVANA gene 1001 7596 . + . FI_gene_label "FP236383.3^ENSG00000280441.3" ; ID "FP236383.3--PPP1R1B^FP236383.3^ENSG00000280441.3" ; exon_id "ENSE00003845623.1" ; exon_number 1 ; gene_id "FP236383.3--PPP1R1B^FP236383.3^ENSG00000280441.3" ; gene_name "FP236383.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189419.3" ; havana_transcript "OTTHUMT00000479653.3" ; level 2 ; orig_coord_info "chr21,8380643,8380972,+" ; tag basic ; transcript_id "FP236383.3--PPP1R1B^ENST00000623860.3" ; transcript_name "FP236383.3-201" ; transcript_support_level 2 ; transcript_type lncRNA
FP236383.3--PPP1R1B HAVANA RNA 1001 7596 . + . FI_gene_label "FP236383.3^ENSG00000280441.3" ; ID "FP236383.3--PPP1R1B^ENST00000623860.3" ; Parent "FP236383.3--PPP1R1B^FP236383.3^ENSG00000280441.3" ; exon_id "ENSE00003845623.1" ; exon_number 1 ; gene_id "FP236383.3--PPP1R1B^FP236383.3^ENSG00000280441.3" ; gene_name "FP236383.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189419.3" ; havana_transcript "OTTHUMT00000479653.3" ; level 2 ; orig_coord_info "chr21,8380643,8380972,+" ; tag basic ; transcript_id "FP236383.3--PPP1R1B^ENST00000623860.3" ; transcript_name "FP236383.3-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
FSIP1--AC013652.1 HAVANA RNA 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^ENST00000558209.1" ; Parent "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
HOMER2--AC124066.1 HAVANA gene 30596 32416 . + . FI_gene_label "AC124066.1^ENSG00000286799.1" ; ID "HOMER2--AC124066.1^AC124066.1^ENSG00000286799.1" ; exon_id "ENSE00003877986.1" ; exon_number 1 ; gene_id "HOMER2--AC124066.1^AC124066.1^ENSG00000286799.1" ; gene_name "AC124066.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193994.1" ; havana_transcript "OTTHUMT00000508351.1" ; level 2 ; orig_coord_info "chr17,19362760,19362810,+" ; tag basic ; transcript_id "HOMER2--AC124066.1^ENST00000655381.1" ; transcript_name "AC124066.1-201" ; transcript_type lncRNA
HOMER2--AC124066.1 HAVANA RNA 30596 32416 . + . FI_gene_label "AC124066.1^ENSG00000286799.1" ; ID "HOMER2--AC124066.1^ENST00000655381.1" ; Parent "HOMER2--AC124066.1^AC124066.1^ENSG00000286799.1" ; exon_id "ENSE00003877986.1" ; exon_number 1 ; gene_id "HOMER2--AC124066.1^AC124066.1^ENSG00000286799.1" ; gene_name "AC124066.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193994.1" ; havana_transcript "OTTHUMT00000508351.1" ; level 2 ; orig_coord_info "chr17,19362760,19362810,+" ; tag basic ; transcript_id "HOMER2--AC124066.1^ENST00000655381.1" ; transcript_name "AC124066.1-201" ; transcript_type lncRNA
L1 and L2 created:
IGH-@-ext--KLHL35 SuperLocus-ext gene 1001 1292341 . + . FI_gene_label "IGH-@-ext^IGH-.g@-ext" ; ID "IGH-@-ext--KLHL35^IGH-@-ext^IGH-.g@-ext" ; gene_id "IGH-@-ext--KLHL35^IGH-@-ext^IGH-.g@-ext" ; gene_name "IGH-@-ext" ; orig_coord_info "chr14,105583731,106875071,+" ; transcript_id "IGH-@-ext--KLHL35^IGH-.t@-ext"
IGH-@-ext--KLHL35 SuperLocus-ext RNA 1001 1292341 . + . FI_gene_label "IGH-@-ext^IGH-.g@-ext" ; ID "IGH-@-ext--KLHL35^IGH-.t@-ext" ; Parent "IGH-@-ext--KLHL35^IGH-@-ext^IGH-.g@-ext" ; gene_id "IGH-@-ext--KLHL35^IGH-@-ext^IGH-.g@-ext" ; gene_name "IGH-@-ext" ; orig_coord_info "chr14,105583731,106875071,+" ; transcript_id "IGH-@-ext--KLHL35^IGH-.t@-ext"
L1 and L2 created:
IGL-@-ext--MYO1E SuperLocus-ext gene 1001 893101 . + . FI_gene_label "IGL-@-ext^IGL-.g@-ext" ; ID "IGL-@-ext--MYO1E^IGL-@-ext^IGL-.g@-ext" ; gene_id "IGL-@-ext--MYO1E^IGL-@-ext^IGL-.g@-ext" ; gene_name "IGL-@-ext" ; orig_coord_info "chr22,22030934,22923034,-" ; transcript_id "IGL-@-ext--MYO1E^IGL-.t@-ext"
IGL-@-ext--MYO1E SuperLocus-ext RNA 1001 893101 . + . FI_gene_label "IGL-@-ext^IGL-.g@-ext" ; ID "IGL-@-ext--MYO1E^IGL-.t@-ext" ; Parent "IGL-@-ext--MYO1E^IGL-@-ext^IGL-.g@-ext" ; gene_id "IGL-@-ext--MYO1E^IGL-@-ext^IGL-.g@-ext" ; gene_name "IGL-@-ext" ; orig_coord_info "chr22,22030934,22923034,-" ; transcript_id "IGL-@-ext--MYO1E^IGL-.t@-ext"
L1 and L2 created:
KAT6A--AC083973.1 HAVANA gene 41844 49362 . + . FI_gene_label "AC083973.1^ENSG00000253408.6" ; ID "KAT6A--AC083973.1^AC083973.1^ENSG00000253408.6" ; exon_id "ENSE00002119589.2" ; exon_number 1 ; gene_id "KAT6A--AC083973.1^AC083973.1^ENSG00000253408.6" ; gene_name "AC083973.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164073.5" ; havana_transcript "OTTHUMT00000377116.2" ; level 2 ; orig_coord_info "chr8,42270651,42271253,-" ; tag dotter_confirmed basic TAGENE ; transcript_id "KAT6A--AC083973.1^ENST00000518213.2" ; transcript_name "AC083973.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
KAT6A--AC083973.1 HAVANA RNA 41844 49362 . + . FI_gene_label "AC083973.1^ENSG00000253408.6" ; ID "KAT6A--AC083973.1^ENST00000518213.2" ; Parent "KAT6A--AC083973.1^AC083973.1^ENSG00000253408.6" ; exon_id "ENSE00002119589.2" ; exon_number 1 ; gene_id "KAT6A--AC083973.1^AC083973.1^ENSG00000253408.6" ; gene_name "AC083973.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164073.5" ; havana_transcript "OTTHUMT00000377116.2" ; level 2 ; orig_coord_info "chr8,42270651,42271253,-" ; tag dotter_confirmed basic TAGENE ; transcript_id "KAT6A--AC083973.1^ENST00000518213.2" ; transcript_name "AC083973.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
LINC02614--CYP4F8 HAVANA gene 9688 18292 . + . FI_gene_label "LINC02614^ENSG00000241288.8" ; ID "LINC02614--CYP4F8^LINC02614^ENSG00000241288.8" ; exon_id "ENSE00001925582.1" ; exon_number 1 ; gene_id "LINC02614--CYP4F8^LINC02614^ENSG00000241288.8" ; gene_name LINC02614 ; gene_type lncRNA ; havana_gene "OTTHUMG00000159585.7" ; havana_transcript "OTTHUMT00000356335.2" ; hgnc_id "HGNC:54072" ; level 2 ; orig_coord_info "chr3,125885880,125887335,-" ; tag basic ; transcript_id "LINC02614--CYP4F8^ENST00000468859.1" ; transcript_name "LINC02614-201" ; transcript_support_level 2 ; transcript_type lncRNA
LINC02614--CYP4F8 HAVANA RNA 9688 18292 . + . FI_gene_label "LINC02614^ENSG00000241288.8" ; ID "LINC02614--CYP4F8^ENST00000468859.1" ; Parent "LINC02614--CYP4F8^LINC02614^ENSG00000241288.8" ; exon_id "ENSE00001925582.1" ; exon_number 1 ; gene_id "LINC02614--CYP4F8^LINC02614^ENSG00000241288.8" ; gene_name LINC02614 ; gene_type lncRNA ; havana_gene "OTTHUMG00000159585.7" ; havana_transcript "OTTHUMT00000356335.2" ; hgnc_id "HGNC:54072" ; level 2 ; orig_coord_info "chr3,125885880,125887335,-" ; tag basic ; transcript_id "LINC02614--CYP4F8^ENST00000468859.1" ; transcript_name "LINC02614-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
LUC7L3--LINC01982 HAVANA gene 24233 27340 . + . FI_gene_label "LINC01982^ENSG00000263317.1" ; ID "LUC7L3--LINC01982^LINC01982^ENSG00000263317.1" ; exon_id "ENSE00002660410.1" ; exon_number 1 ; gene_id "LUC7L3--LINC01982^LINC01982^ENSG00000263317.1" ; gene_name LINC01982 ; gene_type lncRNA ; havana_gene "OTTHUMG00000177546.1" ; havana_transcript "OTTHUMT00000437488.1" ; hgnc_id "HGNC:52812" ; level 2 ; orig_coord_info "chr17,52390515,52390590,+" ; tag dotter_confirmed basic ; transcript_id "LUC7L3--LINC01982^ENST00000572848.1" ; transcript_name "LINC01982-201" ; transcript_support_level 5 ; transcript_type lncRNA
LUC7L3--LINC01982 HAVANA RNA 24233 27340 . + . FI_gene_label "LINC01982^ENSG00000263317.1" ; ID "LUC7L3--LINC01982^ENST00000572848.1" ; Parent "LUC7L3--LINC01982^LINC01982^ENSG00000263317.1" ; exon_id "ENSE00002660410.1" ; exon_number 1 ; gene_id "LUC7L3--LINC01982^LINC01982^ENSG00000263317.1" ; gene_name LINC01982 ; gene_type lncRNA ; havana_gene "OTTHUMG00000177546.1" ; havana_transcript "OTTHUMT00000437488.1" ; hgnc_id "HGNC:52812" ; level 2 ; orig_coord_info "chr17,52390515,52390590,+" ; tag dotter_confirmed basic ; transcript_id "LUC7L3--LINC01982^ENST00000572848.1" ; transcript_name "LINC01982-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
NUS1--AC114501.3 HAVANA gene 12660 13027 . + . FI_gene_label "AC114501.3^ENSG00000238124.1" ; ID "NUS1--AC114501.3^AC114501.3^ENSG00000238124.1" ; exon_id "ENSE00001603093.1" ; exon_number 1 ; gene_id "NUS1--AC114501.3^AC114501.3^ENSG00000238124.1" ; gene_name "AC114501.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000156731.1" ; havana_transcript "OTTHUMT00000345494.1" ; level 2 ; orig_coord_info "chr7,65463071,65463168,+" ; tag basic ; transcript_id "NUS1--AC114501.3^ENST00000453648.1" ; transcript_name "AC114501.3-201" ; transcript_support_level 5 ; transcript_type lncRNA
NUS1--AC114501.3 HAVANA RNA 12660 13027 . + . FI_gene_label "AC114501.3^ENSG00000238124.1" ; ID "NUS1--AC114501.3^ENST00000453648.1" ; Parent "NUS1--AC114501.3^AC114501.3^ENSG00000238124.1" ; exon_id "ENSE00001603093.1" ; exon_number 1 ; gene_id "NUS1--AC114501.3^AC114501.3^ENSG00000238124.1" ; gene_name "AC114501.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000156731.1" ; havana_transcript "OTTHUMT00000345494.1" ; level 2 ; orig_coord_info "chr7,65463071,65463168,+" ; tag basic ; transcript_id "NUS1--AC114501.3^ENST00000453648.1" ; transcript_name "AC114501.3-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
NUS1P1--AC114501.3 HAVANA gene 1001 1882 . + . FI_gene_label "NUS1P1^ENSG00000235636.1" ; ID "NUS1P1--AC114501.3^NUS1P1^ENSG00000235636.1" ; exon_id "ENSE00001722346.1" ; exon_number 1 ; gene_id "NUS1P1--AC114501.3^NUS1P1^ENSG00000235636.1" ; gene_name NUS1P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000021444.1" ; havana_transcript "OTTHUMT00000056416.1" ; hgnc_id "HGNC:38472" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chrX,47512602,47513483,-" ; tag basic ; transcript_id "NUS1P1--AC114501.3^ENST00000446295.1" ; transcript_name "NUS1P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
NUS1P1--AC114501.3 HAVANA RNA 1001 1882 . + . FI_gene_label "NUS1P1^ENSG00000235636.1" ; ID "NUS1P1--AC114501.3^ENST00000446295.1" ; Parent "NUS1P1--AC114501.3^NUS1P1^ENSG00000235636.1" ; exon_id "ENSE00001722346.1" ; exon_number 1 ; gene_id "NUS1P1--AC114501.3^NUS1P1^ENSG00000235636.1" ; gene_name NUS1P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000021444.1" ; havana_transcript "OTTHUMT00000056416.1" ; hgnc_id "HGNC:38472" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chrX,47512602,47513483,-" ; tag basic ; transcript_id "NUS1P1--AC114501.3^ENST00000446295.1" ; transcript_name "NUS1P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
NUS1P1--AC114501.3 HAVANA gene 4883 5250 . + . FI_gene_label "AC114501.3^ENSG00000238124.1" ; ID "NUS1P1--AC114501.3^AC114501.3^ENSG00000238124.1" ; exon_id "ENSE00001603093.1" ; exon_number 1 ; gene_id "NUS1P1--AC114501.3^AC114501.3^ENSG00000238124.1" ; gene_name "AC114501.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000156731.1" ; havana_transcript "OTTHUMT00000345494.1" ; level 2 ; orig_coord_info "chr7,65463071,65463168,+" ; tag basic ; transcript_id "NUS1P1--AC114501.3^ENST00000453648.1" ; transcript_name "AC114501.3-201" ; transcript_support_level 5 ; transcript_type lncRNA
NUS1P1--AC114501.3 HAVANA RNA 4883 5250 . + . FI_gene_label "AC114501.3^ENSG00000238124.1" ; ID "NUS1P1--AC114501.3^ENST00000453648.1" ; Parent "NUS1P1--AC114501.3^AC114501.3^ENSG00000238124.1" ; exon_id "ENSE00001603093.1" ; exon_number 1 ; gene_id "NUS1P1--AC114501.3^AC114501.3^ENSG00000238124.1" ; gene_name "AC114501.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000156731.1" ; havana_transcript "OTTHUMT00000345494.1" ; level 2 ; orig_coord_info "chr7,65463071,65463168,+" ; tag basic ; transcript_id "NUS1P1--AC114501.3^ENST00000453648.1" ; transcript_name "AC114501.3-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
PITPNC1--AC092969.1 HAVANA gene 23449 28481 . + . FI_gene_label "AC092969.1^ENSG00000240086.7" ; ID "PITPNC1--AC092969.1^AC092969.1^ENSG00000240086.7" ; exon_id "ENSE00003834024.1" ; exon_number 1 ; gene_id "PITPNC1--AC092969.1^AC092969.1^ENSG00000240086.7" ; gene_name "AC092969.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000159842.6" ; havana_transcript "OTTHUMT00000357682.1" ; level 2 ; orig_coord_info "chr3,135439756,135439862,-" ; tag TAGENE ; transcript_id "PITPNC1--AC092969.1^ENST00000459861.6" ; transcript_name "AC092969.1-203" ; transcript_support_level 3 ; transcript_type lncRNA
PITPNC1--AC092969.1 HAVANA RNA 23449 28481 . + . FI_gene_label "AC092969.1^ENSG00000240086.7" ; ID "PITPNC1--AC092969.1^ENST00000459861.6" ; Parent "PITPNC1--AC092969.1^AC092969.1^ENSG00000240086.7" ; exon_id "ENSE00003834024.1" ; exon_number 1 ; gene_id "PITPNC1--AC092969.1^AC092969.1^ENSG00000240086.7" ; gene_name "AC092969.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000159842.6" ; havana_transcript "OTTHUMT00000357682.1" ; level 2 ; orig_coord_info "chr3,135439756,135439862,-" ; tag TAGENE ; transcript_id "PITPNC1--AC092969.1^ENST00000459861.6" ; transcript_name "AC092969.1-203" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
PXYLP1--AC092925.1 HAVANA gene 34014 35605 . + . FI_gene_label "AC092925.1^ENSG00000239661.1" ; ID "PXYLP1--AC092925.1^AC092925.1^ENSG00000239661.1" ; exon_id "ENSE00001872434.1" ; exon_number 1 ; gene_id "PXYLP1--AC092925.1^AC092925.1^ENSG00000239661.1" ; gene_name "AC092925.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000159462.1" ; havana_transcript "OTTHUMT00000355528.1" ; level 2 ; orig_coord_info "chr3,147846590,147846657,-" ; tag basic ; transcript_id "PXYLP1--AC092925.1^ENST00000470739.1" ; transcript_name "AC092925.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
PXYLP1--AC092925.1 HAVANA RNA 34014 35605 . + . FI_gene_label "AC092925.1^ENSG00000239661.1" ; ID "PXYLP1--AC092925.1^ENST00000470739.1" ; Parent "PXYLP1--AC092925.1^AC092925.1^ENSG00000239661.1" ; exon_id "ENSE00001872434.1" ; exon_number 1 ; gene_id "PXYLP1--AC092925.1^AC092925.1^ENSG00000239661.1" ; gene_name "AC092925.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000159462.1" ; havana_transcript "OTTHUMT00000355528.1" ; level 2 ; orig_coord_info "chr3,147846590,147846657,-" ; tag basic ; transcript_id "PXYLP1--AC092925.1^ENST00000470739.1" ; transcript_name "AC092925.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
PXYLP1--NPM1P28 HAVANA gene 34014 34853 . + . FI_gene_label "NPM1P28^ENSG00000240804.1" ; ID "PXYLP1--NPM1P28^NPM1P28^ENSG00000240804.1" ; exon_id "ENSE00001887054.1" ; exon_number 1 ; gene_id "PXYLP1--NPM1P28^NPM1P28^ENSG00000240804.1" ; gene_name NPM1P28 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000159461.1" ; havana_transcript "OTTHUMT00000355527.1" ; hgnc_id "HGNC:45207" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr3,147590996,147591835,-" ; tag pseudo_consens basic ; transcript_id "PXYLP1--NPM1P28^ENST00000492269.1" ; transcript_name "NPM1P28-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
PXYLP1--NPM1P28 HAVANA RNA 34014 34853 . + . FI_gene_label "NPM1P28^ENSG00000240804.1" ; ID "PXYLP1--NPM1P28^ENST00000492269.1" ; Parent "PXYLP1--NPM1P28^NPM1P28^ENSG00000240804.1" ; exon_id "ENSE00001887054.1" ; exon_number 1 ; gene_id "PXYLP1--NPM1P28^NPM1P28^ENSG00000240804.1" ; gene_name NPM1P28 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000159461.1" ; havana_transcript "OTTHUMT00000355527.1" ; hgnc_id "HGNC:45207" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr3,147590996,147591835,-" ; tag pseudo_consens basic ; transcript_id "PXYLP1--NPM1P28^ENST00000492269.1" ; transcript_name "NPM1P28-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
RNU6-394P--EDA2R ENSEMBL gene 1001 1107 . + . FI_gene_label "RNU6-394P^ENSG00000222667.1" ; ID "RNU6-394P--EDA2R^RNU6-394P^ENSG00000222667.1" ; exon_id "ENSE00001590553.1" ; exon_number 1 ; gene_id "RNU6-394P--EDA2R^RNU6-394P^ENSG00000222667.1" ; gene_name "RNU6-394P" ; gene_type snRNA ; hgnc_id "HGNC:47357" ; level 3 ; orig_coord_info "chrX,66676258,66676364,-" ; tag basic ; transcript_id "RNU6-394P--EDA2R^ENST00000410735.1" ; transcript_name "RNU6-394P-201" ; transcript_support_level NA ; transcript_type snRNA
RNU6-394P--EDA2R ENSEMBL RNA 1001 1107 . + . FI_gene_label "RNU6-394P^ENSG00000222667.1" ; ID "RNU6-394P--EDA2R^ENST00000410735.1" ; Parent "RNU6-394P--EDA2R^RNU6-394P^ENSG00000222667.1" ; exon_id "ENSE00001590553.1" ; exon_number 1 ; gene_id "RNU6-394P--EDA2R^RNU6-394P^ENSG00000222667.1" ; gene_name "RNU6-394P" ; gene_type snRNA ; hgnc_id "HGNC:47357" ; level 3 ; orig_coord_info "chrX,66676258,66676364,-" ; tag basic ; transcript_id "RNU6-394P--EDA2R^ENST00000410735.1" ; transcript_name "RNU6-394P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
THRA--FP671120.4 HAVANA gene 21568 28141 . + . FI_gene_label "FP671120.4^ENSG00000278996.1" ; ID "THRA--FP671120.4^FP671120.4^ENSG00000278996.1" ; exon_id "ENSE00003755016.1" ; exon_number 1 ; gene_id "THRA--FP671120.4^FP671120.4^ENSG00000278996.1" ; gene_name "FP671120.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189417.1" ; havana_transcript "OTTHUMT00000479651.1" ; level 2 ; orig_coord_info "chr21,8197620,8197927,+" ; tag basic ; transcript_id "THRA--FP671120.4^ENST00000623664.1" ; transcript_name "FP671120.4-201" ; transcript_support_level 2 ; transcript_type lncRNA
THRA--FP671120.4 HAVANA RNA 21568 28141 . + . FI_gene_label "FP671120.4^ENSG00000278996.1" ; ID "THRA--FP671120.4^ENST00000623664.1" ; Parent "THRA--FP671120.4^FP671120.4^ENSG00000278996.1" ; exon_id "ENSE00003755016.1" ; exon_number 1 ; gene_id "THRA--FP671120.4^FP671120.4^ENSG00000278996.1" ; gene_name "FP671120.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189417.1" ; havana_transcript "OTTHUMT00000479651.1" ; level 2 ; orig_coord_info "chr21,8197620,8197927,+" ; tag basic ; transcript_id "THRA--FP671120.4^ENST00000623664.1" ; transcript_name "FP671120.4-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
ZNF827--FAM133DP HAVANA gene 44120 44810 . + . FI_gene_label "FAM133DP^ENSG00000230562.3" ; ID "ZNF827--FAM133DP^FAM133DP^ENSG00000230562.3" ; exon_id "ENSE00001958289.1" ; exon_number 1 ; gene_id "ZNF827--FAM133DP^FAM133DP^ENSG00000230562.3" ; gene_name FAM133DP ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000153949.1" ; havana_transcript "OTTHUMT00000333154.1" ; hgnc_id "HGNC:44192" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,157379724,157380414,-" ; tag pseudo_consens basic ; transcript_id "ZNF827--FAM133DP^ENST00000464802.1" ; transcript_name "FAM133DP-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ZNF827--FAM133DP HAVANA RNA 44120 44810 . + . FI_gene_label "FAM133DP^ENSG00000230562.3" ; ID "ZNF827--FAM133DP^ENST00000464802.1" ; Parent "ZNF827--FAM133DP^FAM133DP^ENSG00000230562.3" ; exon_id "ENSE00001958289.1" ; exon_number 1 ; gene_id "ZNF827--FAM133DP^FAM133DP^ENSG00000230562.3" ; gene_name FAM133DP ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000153949.1" ; havana_transcript "OTTHUMT00000333154.1" ; hgnc_id "HGNC:44192" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,157379724,157380414,-" ; tag pseudo_consens basic ; transcript_id "ZNF827--FAM133DP^ENST00000464802.1" ; transcript_name "FAM133DP-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
1093 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
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--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
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------------------------------ Check8: check cds -------------------------------
No problem found
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----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
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----------------------------- Check10: check utrs ------------------------------
1951 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
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------------------------ Check11: all level2 locations -------------------------
No problem found
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------------------------ Check12: all level1 locations -------------------------
We fixed 93 wrong level1 location cases
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---------------------- Check13: remove identical isoforms ----------------------
None found
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------ End checks (done in 1 second) ------
GFF3 file parsed