Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/3bfa3f21041f7ffd8ce67b1440cabc/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/3bfa3f21041f7ffd8ce67b1440cabc/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/4efeff628926cc15e6be76b317a5d2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/4efeff628926cc15e6be76b317a5d2/.command.run
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory