[W::hts_idx_load3] The index file is older than the data file: 659_bua-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	360902675
Known Splicing Events:	358025658
Partial Novel Splicing Events:	1753606
Novel Splicing Events:	925400
Filtered Splicing Events:	198011

Total splicing  Junctions:	628841
Known Splicing Junctions:	284210
Partial Novel Splicing Junctions:	179744
Novel Splicing Junctions:	164887

===================================================================
Create BED file ...
Create Interact file ...