Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/cece951fc75f7526dda2fbbc39d89c/659_bua-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/08cd631ecdec879d833a25c384b490/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/08cd631ecdec879d833a25c384b490/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/184fb834bc8193db29cca1fd0a720b/659_bua-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 360902675
[W::hts_idx_load3] The index file is older than the data file: 659_bua-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	360902675
Known Splicing Events:	358025658
Partial Novel Splicing Events:	1753606
Novel Splicing Events:	925400
Filtered Splicing Events:	198011

Total splicing  Junctions:	628841
Known Splicing Junctions:	284210
Partial Novel Splicing Junctions:	179744
Novel Splicing Junctions:	164887

===================================================================
Create BED file ...
Create Interact file ...