Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/cdb2125f452168be7b45fa6bf8a2ff/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/cdb2125f452168be7b45fa6bf8a2ff/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/ea83f804f8398b21fdfa80f7295826/659_bua-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/35589e7482d5b3ea6e6590c5db3051/659_bua-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bua-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (18543940) splicing reads. 261902 splicing junctions. 177385 known splicing junctions. 84517 novel splicing junctions.
sampling 10% (37087880) splicing reads. 320290 splicing junctions. 189143 known splicing junctions. 131147 novel splicing junctions.
sampling 15% (55631820) splicing reads. 359703 splicing junctions. 195343 known splicing junctions. 164360 novel splicing junctions.
sampling 20% (74175761) splicing reads. 388827 splicing junctions. 199371 known splicing junctions. 189456 novel splicing junctions.
sampling 25% (92719701) splicing reads. 411346 splicing junctions. 202127 known splicing junctions. 209219 novel splicing junctions.
sampling 30% (111263641) splicing reads. 429710 splicing junctions. 204225 known splicing junctions. 225485 novel splicing junctions.
sampling 35% (129807582) splicing reads. 444773 splicing junctions. 205877 known splicing junctions. 238896 novel splicing junctions.
sampling 40% (148351522) splicing reads. 457409 splicing junctions. 207151 known splicing junctions. 250258 novel splicing junctions.
sampling 45% (166895462) splicing reads. 467939 splicing junctions. 208126 known splicing junctions. 259813 novel splicing junctions.
sampling 50% (185439403) splicing reads. 477032 splicing junctions. 208987 known splicing junctions. 268045 novel splicing junctions.
sampling 55% (203983343) splicing reads. 484730 splicing junctions. 209679 known splicing junctions. 275051 novel splicing junctions.
sampling 60% (222527283) splicing reads. 491229 splicing junctions. 210262 known splicing junctions. 280967 novel splicing junctions.
sampling 65% (241071223) splicing reads. 497046 splicing junctions. 210754 known splicing junctions. 286292 novel splicing junctions.
sampling 70% (259615164) splicing reads. 502071 splicing junctions. 211203 known splicing junctions. 290868 novel splicing junctions.
sampling 75% (278159104) splicing reads. 506432 splicing junctions. 211575 known splicing junctions. 294857 novel splicing junctions.
sampling 80% (296703044) splicing reads. 510142 splicing junctions. 211905 known splicing junctions. 298237 novel splicing junctions.
sampling 85% (315246985) splicing reads. 513256 splicing junctions. 212184 known splicing junctions. 301072 novel splicing junctions.
sampling 90% (333790925) splicing reads. 515820 splicing junctions. 212421 known splicing junctions. 303399 novel splicing junctions.
sampling 95% (352334865) splicing reads. 517869 splicing junctions. 212575 known splicing junctions. 305294 novel splicing junctions.
sampling 100% (370878806) splicing reads. 519509 splicing junctions. 212724 known splicing junctions. 306785 novel splicing junctions.
null device 
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