Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/9a877395d776ae873b22a61b4fedf4/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/ee2f093820e52bbba43d78ae9daed2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/ee2f093820e52bbba43d78ae9daed2/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 291132200
unpaired = 6071872
MERGED PAIRED END READS = 291132200
MATES PROCESSED = 588336272
TOTAL READS     = 297204072
DISTINCT READS  = 7.54567e+07
DISTINCT COUNTS = 1312
MAX COUNT       = 1407440
COUNTS OF 1     = 2.14492e+07
MAX TERMS       = 100
OBSERVED COUNTS (1407441)
1	21449227
2	14277672
3	10774521
4	7994914
5	5798188
6	4131842
7	2915479
8	2058483
9	1456131
10	1040970
11	753198
12	551235
13	412174
14	313246
15	241417
16	188767
17	151276
18	122322
19	99264
20	81725
21	68456
22	57117
23	48210
24	41467
25	35516
26	30876
27	26677
28	23510
29	20915
30	18795
31	16510
32	15053
33	13535
34	12344
35	11070
36	10264
37	9320
38	8736
39	8112
40	7533
41	6948
42	6387
43	5959
44	5623
45	5321
46	4941
47	4725
48	4334
49	4125
50	3780
51	3708
52	3335
53	3323
54	3158
55	2945
56	2909
57	2569
58	2525
59	2432
60	2354
61	2201
62	2127
63	2030
64	1958
65	1824
66	1773
67	1715
68	1644
69	1512
70	1447
71	1387
72	1424
73	1343
74	1289
75	1209
76	1133
77	1190
78	1092
79	1096
80	1059
81	1005
82	952
83	906
84	915
85	858
86	831
87	836
88	845
89	811
90	798
91	767
92	699
93	726
94	676
95	649
96	645
97	615
98	585
99	608
100	598
101	587
102	541
103	525
104	517
105	501
106	495
107	488
108	476
109	457
110	430
111	430
112	410
113	429
114	391
115	391
116	352
117	379
118	382
119	372
120	361
121	338
122	366
123	342
124	317
125	342
126	305
127	275
128	266
129	270
130	289
131	276
132	274
133	271
134	234
135	273
136	226
137	235
138	253
139	232
140	222
141	242
142	242
143	196
144	226
145	212
146	214
147	205
148	188
149	213
150	197
151	203
152	190
153	179
154	200
155	164
156	165
157	170
158	158
159	209
160	186
161	170
162	183
163	172
164	164
165	143
166	149
167	148
168	152
169	152
170	126
171	131
172	128
173	118
174	123
175	120
176	126
177	120
178	120
179	118
180	145
181	114
182	107
183	131
184	109
185	114
186	103
187	109
188	111
189	112
190	106
191	106
192	115
193	102
194	107
195	113
196	98
197	86
198	93
199	90
200	88
201	87
202	98
203	78
204	95
205	80
206	78
207	78
208	85
209	71
210	76
211	68
212	89
213	74
214	64
215	72
216	77
217	92
218	69
219	68
220	79
221	68
222	67
223	61
224	70
225	85
226	70
227	68
228	62
229	61
230	54
231	65
232	44
233	56
234	55
235	57
236	63
237	61
238	58
239	64
240	51
241	66
242	43
243	60
244	59
245	59
246	52
247	55
248	40
249	47
250	45
251	53
252	44
253	44
254	47
255	35
256	44
257	36
258	38
259	42
260	44
261	28
262	58
263	42
264	51
265	48
266	45
267	50
268	46
269	35
270	42
271	56
272	41
273	41
274	35
275	41
276	35
277	37
278	39
279	29
280	33
281	38
282	42
283	50
284	38
285	37
286	26
287	39
288	26
289	27
290	36
291	34
292	26
293	29
294	29
295	23
296	34
297	28
298	34
299	30
300	19
301	31
302	35
303	31
304	36
305	27
306	21
307	33
308	25
309	34
310	32
311	19
312	30
313	32
314	21
315	31
316	32
317	25
318	23
319	30
320	32
321	22
322	25
323	23
324	28
325	28
326	33
327	20
328	24
329	19
330	19
331	14
332	20
333	33
334	21
335	15
336	21
337	26
338	20
339	12
340	16
341	18
342	17
343	16
344	22
345	21
346	16
347	16
348	16
349	23
350	14
351	16
352	25
353	28
354	21
355	19
356	20
357	16
358	14
359	19
360	17
361	12
362	12
363	12
364	17
365	16
366	16
367	13
368	16
369	19
370	16
371	17
372	20
373	17
374	22
375	15
376	13
377	13
378	15
379	23
380	18
381	23
382	14
383	21
384	16
385	21
386	21
387	9
388	18
389	18
390	9
391	14
392	17
393	20
394	20
395	5
396	17
397	17
398	10
399	8
400	21
401	13
402	12
403	17
404	6
405	11
406	13
407	14
408	13
409	21
410	8
411	13
412	10
413	3
414	8
415	12
416	16
417	14
418	11
419	10
420	15
421	12
422	5
423	15
424	11
425	10
426	7
427	9
428	9
429	14
430	13
431	22
432	12
433	10
434	12
435	13
436	9
437	6
438	8
439	10
440	8
441	6
442	10
443	9
444	4
445	14
446	19
447	7
448	6
449	9
450	8
451	13
452	8
453	6
454	5
455	10
456	7
457	12
458	6
459	10
460	11
461	6
462	12
463	9
464	5
465	10
466	6
467	9
468	8
469	5
470	10
471	6
472	10
473	9
474	10
475	9
476	11
477	11
478	8
479	10
480	10
481	6
482	4
483	12
484	5
485	9
486	7
487	7
488	8
489	13
490	1
491	6
492	3
493	8
494	8
495	6
496	6
497	7
498	7
499	8
500	4
501	7
502	5
503	13
504	4
505	7
506	4
507	6
508	2
509	4
510	8
511	5
512	2
513	3
514	9
515	6
516	7
517	4
518	9
519	9
520	4
521	6
522	7
523	7
524	8
525	6
526	6
527	3
528	3
529	5
530	7
531	6
532	7
533	4
534	4
535	4
536	6
537	2
538	10
539	4
540	6
541	7
542	11
543	5
544	9
545	7
546	4
547	6
548	10
549	4
550	5
551	5
552	5
553	4
554	6
555	3
556	4
557	5
558	4
559	5
560	8
561	2
562	3
563	6
564	4
565	8
566	3
568	3
569	8
570	3
571	9
572	5
573	6
574	5
575	6
576	5
577	6
578	7
579	6
580	5
581	6
582	7
583	3
584	4
585	3
586	11
587	4
588	6
589	2
590	6
591	3
592	6
593	4
595	7
596	5
597	7
598	4
599	3
600	6
601	7
602	4
603	4
604	3
605	4
606	2
607	2
608	1
609	2
610	5
611	4
612	2
613	5
614	5
616	7
618	6
619	3
620	2
621	5
622	4
623	6
624	4
625	3
626	2
627	5
628	2
629	2
630	2
631	2
632	3
634	4
635	6
636	4
637	2
638	5
639	3
640	1
641	2
642	3
643	3
644	4
645	6
646	1
647	3
648	4
649	4
650	4
651	6
652	4
653	5
655	4
656	6
657	3
658	2
660	2
661	6
662	2
663	2
664	5
665	3
666	1
667	7
668	2
669	1
670	3
671	2
672	2
673	4
674	4
677	2
678	6
680	6
681	3
682	4
683	3
684	1
685	1
686	7
687	2
688	4
689	3
690	3
691	5
692	1
693	4
694	2
695	2
696	1
697	1
698	7
699	2
700	4
701	7
702	1
703	3
704	1
705	4
706	1
707	2
708	1
709	3
710	1
711	1
712	1
713	3
714	4
715	2
716	3
717	3
718	2
719	2
720	4
721	2
722	2
723	3
724	1
725	3
726	4
727	1
728	2
729	4
730	2
732	5
733	3
735	1
736	3
737	3
738	2
739	5
740	2
741	1
742	2
743	3
744	4
745	3
746	3
748	2
749	1
750	3
751	1
752	4
753	2
754	2
755	1
756	1
757	3
758	1
759	2
760	1
761	2
762	2
763	2
764	4
765	2
766	1
767	2
768	1
769	3
770	2
771	5
772	1
773	1
774	3
775	1
776	4
777	1
780	3
781	2
782	1
786	1
787	2
788	1
789	1
790	1
793	2
794	2
795	4
797	1
798	1
799	1
800	4
801	4
802	2
804	1
806	1
807	5
808	3
809	2
810	3
811	2
812	3
813	1
814	3
817	3
818	1
820	1
822	1
823	2
824	5
825	1
826	1
827	1
828	1
829	4
830	3
831	1
833	2
834	3
835	3
836	1
838	5
839	1
840	2
841	4
842	2
843	2
844	3
845	3
846	2
847	2
848	2
849	2
850	1
851	1
852	1
853	2
854	2
855	2
858	1
859	1
860	5
861	2
862	2
863	3
866	1
867	1
868	2
869	1
870	2
872	2
873	1
874	2
875	1
876	2
877	3
878	2
879	2
881	1
882	1
883	2
885	2
886	1
887	4
888	1
890	1
891	1
892	1
894	1
897	1
898	1
900	2
901	1
904	1
905	1
906	4
907	1
908	1
909	1
910	2
912	3
914	1
916	1
918	2
919	1
920	1
922	2
923	2
924	1
925	1
928	2
929	1
930	2
933	1
934	1
935	2
936	2
937	4
938	1
939	1
940	2
942	1
947	2
948	1
949	1
950	2
951	1
953	1
955	2
956	2
957	3
959	1
961	1
967	2
970	6
971	2
972	1
973	1
975	2
977	1
978	3
979	1
980	1
981	1
986	2
987	1
988	1
992	1
993	2
994	2
996	1
998	1
999	2
1000	1
1003	3
1004	5
1007	1
1009	1
1010	1
1011	1
1013	2
1014	1
1015	1
1016	1
1018	1
1019	2
1021	1
1024	1
1025	2
1027	2
1028	1
1029	1
1031	1
1032	2
1034	3
1035	1
1036	2
1040	2
1041	3
1042	1
1043	1
1044	1
1045	1
1046	1
1047	1
1048	1
1051	1
1055	2
1057	2
1058	2
1059	2
1060	1
1061	2
1062	1
1063	4
1064	1
1067	4
1068	1
1072	1
1082	1
1083	2
1085	1
1089	3
1092	3
1095	4
1097	1
1100	1
1103	1
1107	2
1109	2
1110	1
1112	1
1113	1
1114	1
1115	1
1116	1
1118	1
1120	2
1122	1
1123	1
1125	1
1127	1
1131	1
1137	1
1139	1
1140	2
1141	1
1142	1
1143	2
1145	1
1146	1
1149	1
1151	1
1152	2
1153	1
1156	1
1158	1
1159	1
1161	1
1164	2
1170	1
1174	2
1175	1
1177	2
1179	1
1181	2
1184	4
1185	1
1187	1
1188	1
1189	1
1190	1
1200	1
1202	1
1206	1
1210	1
1213	1
1215	1
1219	4
1221	1
1225	1
1236	1
1238	1
1241	1
1247	3
1250	1
1252	1
1254	1
1256	1
1259	1
1270	1
1273	1
1278	1
1282	1
1283	1
1284	1
1286	1
1288	1
1290	1
1292	2
1294	2
1297	1
1300	2
1301	2
1304	1
1305	1
1307	1
1309	1
1310	1
1312	1
1315	1
1316	1
1321	1
1322	1
1323	1
1327	1
1332	1
1339	1
1347	1
1348	1
1353	1
1359	1
1366	1
1367	1
1371	1
1374	1
1376	1
1379	1
1383	1
1386	1
1387	2
1388	1
1390	1
1394	2
1402	2
1403	1
1405	1
1406	1
1409	1
1410	1
1414	1
1416	1
1423	2
1425	1
1426	1
1427	1
1430	1
1432	1
1433	1
1436	1
1454	1
1461	1
1466	1
1467	1
1475	2
1481	1
1485	1
1486	1
1491	1
1492	1
1497	1
1500	2
1501	1
1511	1
1514	1
1515	1
1522	1
1533	1
1534	1
1536	1
1541	1
1552	1
1553	1
1564	1
1565	1
1575	2
1581	1
1585	1
1591	1
1597	1
1598	1
1605	1
1616	1
1617	1
1621	1
1631	1
1634	1
1638	1
1646	1
1659	2
1665	1
1672	1
1673	1
1674	1
1676	1
1682	1
1684	2
1695	1
1703	1
1704	1
1707	1
1714	1
1726	1
1731	1
1735	1
1740	1
1748	1
1756	1
1759	1
1760	1
1770	1
1771	1
1777	1
1789	1
1794	3
1798	1
1802	1
1804	1
1809	1
1812	1
1814	1
1820	1
1822	1
1828	1
1829	1
1831	1
1835	2
1836	1
1839	1
1846	1
1852	1
1855	2
1879	1
1883	1
1891	1
1902	1
1906	1
1912	1
1913	2
1930	1
1934	2
1935	1
1952	1
1954	1
1956	1
1959	1
1961	1
1965	1
1975	1
1977	1
1984	1
2003	1
2015	1
2016	1
2036	1
2046	1
2073	1
2079	1
2082	1
2084	1
2092	1
2093	1
2097	1
2100	1
2103	1
2123	1
2125	1
2143	1
2153	1
2156	1
2163	1
2166	1
2172	1
2173	1
2182	1
2186	1
2187	1
2213	1
2236	1
2240	1
2252	1
2258	1
2263	1
2278	1
2287	1
2289	1
2297	1
2308	1
2312	1
2329	1
2337	1
2341	1
2349	1
2368	1
2376	1
2412	1
2439	1
2447	1
2454	1
2455	1
2456	1
2460	1
2519	1
2542	1
2544	1
2555	1
2580	1
2595	1
2612	1
2650	1
2663	1
2681	1
2742	1
2794	1
2830	1
2845	1
2859	1
2862	1
2863	1
2880	1
2902	1
2927	1
2942	1
2957	1
3002	1
3049	1
3065	1
3098	1
3125	1
3160	1
3218	1
3316	1
3396	1
3418	1
3441	1
3448	1
3458	1
3506	1
3509	1
3548	1
3597	1
3656	1
3661	1
3717	1
3767	1
3818	1
4080	1
4162	2
4359	1
4453	1
4457	1
4486	1
4768	1
4816	1
5418	1
5548	1
6495	1
7415	1
7547	1
7976	1
9438	1
15824	1
18076	1
62806	1
1407440	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
............_._.........................................................
..............._.............._.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]