Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/cece951fc75f7526dda2fbbc39d89c/659_bua-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/b2e6338eadc5d0d92dc2cda9303991/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/b2e6338eadc5d0d92dc2cda9303991/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/184fb834bc8193db29cca1fd0a720b/659_bua-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory