File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/46528ef78095c008f6d7a952305980/.command.log
Size
2.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bQZ-T1-TRNA-1_A23MVY2LT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-bba2394f-ea06-4038-829e-f0bb41c45b0f/67/1d6e211d8f66f1c89f8ec9083ff96d/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/46528ef78095c008f6d7a952305980/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/206b0c8ddb5ae5f43a1ac2a59290e2/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/46528ef78095c008f6d7a952305980/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/4f0eeff7bc804117fa8a72fd26e553/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
AGAP3--BRAF
starfusion
arriba
SYNE2--MTHFD1
starfusion
arriba
AL669831.4--SEPTIN14
starfusion
AC025884.2--IGH-@-ext
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
TVP23C--CDRT4
arriba

  0%|          | 0/7 [00:00<?, ?it/s]
Processing AGAP3--BRAF:   0%|          | 0/7 [00:00<?, ?it/s]
Processing AGAP3--BRAF:  14%|█▍        | 1/7 [00:00<00:00,  9.27it/s]
Processing SYNE2--MTHFD1:  14%|█▍        | 1/7 [00:00<00:00,  9.27it/s]
Processing SYNE2--MTHFD1:  29%|██▊       | 2/7 [00:00<00:00,  9.49it/s]
Processing AL669831.4--SEPTIN14:  29%|██▊       | 2/7 [00:00<00:00,  9.49it/s]
Processing AL669831.4--SEPTIN14:  43%|████▎     | 3/7 [00:00<00:00,  9.57it/s]
Processing AC025884.2--IGH-@-ext:  43%|████▎     | 3/7 [00:00<00:00,  9.57it/s]
Processing AC025884.2--IGH-@-ext:  57%|█████▋    | 4/7 [00:00<00:00,  9.60it/s]
Processing TLK2P1--AC110079.1:  57%|█████▋    | 4/7 [00:00<00:00,  9.60it/s]   
Processing TLK2P1--AC110079.1:  71%|███████▏  | 5/7 [00:00<00:00,  9.62it/s]
Processing TLK2--AC240565.1:  71%|███████▏  | 5/7 [00:00<00:00,  9.62it/s]  
Processing TLK2--AC240565.1:  86%|████████▌ | 6/7 [00:00<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  86%|████████▌ | 6/7 [00:00<00:00,  9.64it/s]   
Processing TVP23C--CDRT4: 100%|██████████| 7/7 [00:00<00:00,  9.64it/s]
Processing TVP23C--CDRT4: 100%|██████████| 7/7 [00:00<00:00,  9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory