Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/3c1b598253d76f41cf339186750b69/659_cIX-T1-TRNA-1_A23MVY2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/23d9622167bb4b63dc00cc0c0047f1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/23d9622167bb4b63dc00cc0c0047f1/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory