Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/867dc456cac00162a6ff0ce2207d78/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/867dc456cac00162a6ff0ce2207d78/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/970c326e18c1b31d1179b629d8c796/659_bCu-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/dc1834895b83c79c0cf188b3422e6a/659_bCu-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 102598434
[W::hts_idx_load3] The index file is older than the data file: 659_bCu-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	102598434
Known Splicing Events:	101487517
Partial Novel Splicing Events:	669091
Novel Splicing Events:	386606
Filtered Splicing Events:	55220

Total splicing  Junctions:	231210
Known Splicing Junctions:	178586
Partial Novel Splicing Junctions:	31012
Novel Splicing Junctions:	21612

===================================================================
Create BED file ...
Create Interact file ...