Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/35bac6bf3dbd70d9b888efe3491424/659_bGc-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/8729727fbe639a19b94d07fa87f574/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/8729727fbe639a19b94d07fa87f574/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/4135d356b368ca996d5b2887afe346/659_bGc-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bGc-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1