[W::hts_idx_load3] The index file is older than the data file: 659_bGW-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	376416460
Known Splicing Events:	372892110
Partial Novel Splicing Events:	1676145
Novel Splicing Events:	1679286
Filtered Splicing Events:	168919

Total splicing  Junctions:	651683
Known Splicing Junctions:	281530
Partial Novel Splicing Junctions:	169851
Novel Splicing Junctions:	200302

===================================================================
Create BED file ...
Create Interact file ...